PubMed Health⌕ Search

SEARCH · PubMed Health

Results for “Phase Separation”

Explore indexed PubMed citations for clinical trials, systematic reviews and public health research. Read source abstracts and follow each citation to its original PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 631 records · Page 35Linked to original sources
PubMed2006

Evidence for electronic phase separation between orbital orderings in SmVO3.

We report evidence for phase coexistence of orbital orderings of different symmetry in SmVO3 by high resolution x-ray powder diffraction. The phase coexistence is triggered by an antiferromagnetic ordering of the vanadium spins near 130 K, below an initial orbital ordering near 200 K. The phase coexistence is the result of the intermediate ionic size of samarium coupled to exchange striction at the vanadium spin ordering.

Journal Article↗
PubMed2001

Binary Gaussian core model: fluid-fluid phase separation and interfacial properties.

Using a mean-field equation of state we calculate the density-concentration phase diagrams for a binary mixture of repulsive Gaussian core particles over a range of size ratios. A simple mean-field density functional (DFT) approach, equivalent to the random phase approximation, is used to calculate the surface tension and density profiles of the interface between the demixed fluid phases of the binary mixture. For certain coexisting states oscillations are found in the density profiles on both sides of the interface, i.e., approaching both bulk phases. The form of the oscillations is determined by the asymptotic decay of the bulk total pairwise correlations, and the onset of oscillations in the interfacial density profiles depends on the location of the crossover line (Fisher-Widom line) in the bulk phase diagram where the asymptotic decay changes from monotonic to damped oscillatory. For certain particle size ratios we find another crossover line that separates a region of the phase diagram where the longest-range decay of the pairwise correlations is damped oscillatory from a region where the longest-range decay is damped oscillatory but with a different wavelength. We argue that many of the predictions of the simple DFT approach should remain valid in more refined treatments.

Journal Article↗
PubMed2002

A proposed function for hippocampal theta rhythm: separate phases of encoding and retrieval enhance reversal of prior learning.

The theta rhythm appears in the rat hippocampal electroencephalogram during exploration and shows phase locking to stimulus acquisition. Lesions that block theta rhythm impair performance in tasks requiring reversal of prior learning, including reversal in a T-maze, where associations between one arm location and food reward need to be extinguished in favor of associations between the opposite arm location and food reward. Here, a hippocampal model shows how theta rhythm could be important for reversal in this task by providing separate functional phases during each 100-300 msec cycle, consistent with physiological data. In the model, effective encoding of new associations occurs in the phase when synaptic input from entorhinal cortex is strong and long-term potentiation (LTP) of excitatory connections arising from hippocampal region CA3 is strong, but synaptic currents arising from region CA3 input are weak (to prevent interference from prior learned associations). Retrieval of old associations occurs in the phase when entorhinal input is weak and synaptic input from region CA3 is strong, but when depotentiation occurs at synapses from CA3 (to allow extinction of prior learned associations that do not match current input). These phasic changes require that LTP at synapses arising from region CA3 should be strongest at the phase when synaptic transmission at these synapses is weakest. Consistent with these requirements, our recent data show that synaptic transmission in stratum radiatum is weakest at the positive peak of local theta, which is when previous data show that induction of LTP is strongest in this layer.

Algorithms↗
PubMed2000

Anaerobic digestion from residue of industrial cassava industrialization with acidogenic and methanogenic physical separation phases.

A trial was carried out in a continuous regimen, using a completely stirred tank reactor, at acidogenic phase, and a hybrid reactor (upflow anaerobic sludge blanket + fixed bed) at methanogenic phase at room temperature. The residue to be treated came from a flour and cassava meal industry, and the reactors operated for 300 d with affluent chemical oxygen demand (COD) concentrations of 7500, 9000, 11,000, and 14,000 mg/L. The final results showed a biogas production with a content of 80% methane and an average reduction of COD and free cyanide of nearly 96 and 98%, respectively. The separation of phases selected bacterial groups. At acidogenic phase, a predominance of propionic, n-butyric, and n-valeric acids, as well as a biomass composed of 95% fermentative bacilli, which were responsible for a 90% reduction in free cyanide concentration, was observed. At methanogenic phase, a predominance of methanogenic bacteria that came only from the Methanothrix genus was observed. The bacteria were responsible for high levels of organic matter removal and methane production.

Anaerobiosis↗
PubMed2002

Modulation of concentration fluctuations in phase-separated lipid membranes by polypeptide insertion.

The lateral membrane organization and phase behavior of the binary lipid mixture DMPC (1,2-dimyristoyl-sn-glycero-3-phosphatidylcholine) - DSPC (1,2-distearoyl-sn-glycero-3-phosphatidylcholine) without and with incorporated gramicidin D (GD) as a model biomembrane polypeptide was studied by small-angle neutron scattering, Fourier-transform infrared spectroscopy, and by two-photon excitation fluorescence microscopy on giant unilamellar vesicles. The small-angle neutron scattering method allows the detection of concentration fluctuations in the range from 1 to 200 nm. Fluorescence microscopy was used for direct visualization of the lateral lipid organization and domain shapes on a micrometer length scale including information of the lipid phase state. In the fluid-gel coexistence region of the pure binary lipid system, large-scale concentration fluctuations appear. Infrared spectral parameters were used to determine the peptide conformation adopted in the different lipid phases. The data show that the structure of the temperature-dependent lipid phases is significantly altered by the insertion of 2 to 5 mol% GD. At temperatures corresponding to the gel-fluid phase coexistence region the concentration fluctuations drastically decrease, and we observe domains in the giant unilamellar vesicles, which mainly disappear by the incorporation of 2 to 5 mol% GD. Further, the lipid matrix has the ability to modulate the conformation of the inserted polypeptide. The balance between double-helical and helical dimer structures of GD depends on the phospholipid chain length and phase state. A large hydrophobic mismatch, such as in gel phase one-component DSPC bilayers, leads to an increase in population of double-helical structures. Using an effective molecular sorting mechanism, a large hydrophobic mismatch can be avoided in the DMPC-DSPC lipid mixture, which leads to significant changes in the heterogeneous lipid structure and in polypeptide conformation.

Anti-Bacterial Agents↗
PubMed2004

Smooth transition from metastability to instability in phase separating protein solutions.

For insight into the structure and dynamics of phases emerging upon crossing the metastability/instability boundary we monitor with optical microscopy, in real time and in real space, the generation of a dense liquid phase in high-concentration solutions of the protein lysozyme after temperature quenches into thermodynamically defined metastable and unstable regions. We show with this system, which is a poor fit to mean-field assumptions, that the evolution of the structure factor during nucleation is similar to that during spinodal decomposition and reveals no singularity predicted upon crossing the metastability boundary. We introduce two kinetic definitions of the metastability/instability boundary that yield values within approximately 1.5 K, i.e., the boundary appears as an area rather than a line, which is near and above the thermodynamic prediction. Delay times for the appearance of the new phase in the unstable regime are significant, i.e., new-phase growth is hindered by kinetic barriers. While our results agree with predictions of the non-mean-field theories of phase transformations, the experimentally observed behavior is richer than the one envisioned by theory.

Journal Article↗
PubMed2004

Phase separation in model polydisperse ferrofluids.

The influence of polydispersity on the phase equilibrium properties of a dipolar system with additional short-range (repulsive+attractive) interactions (modeled by a shifted Lennard-Jones pair potential) is studied by means of Gibbs ensemble Monte Carlo simulations. The critical temperature and density as well as the magnetization at the critical point are calculated as a function of the applied magnetic field, and the obtained results are compared with the data determined in a monodisperse equivalent of the system.

Journal Article↗
PubMed1987

Binary liquid phase separation and critical phenomena in a protein/water solution.

We have investigated the phase diagram of aqueous solutions of the bovine lens protein gamma II-crystallin. For temperatures T less than Tc = 278.5 K, we find that these solutions exhibit a reversible coexistence between two isotropic liquid phases differing in protein concentration. The dilute and concentrated branches of the coexistence curve were characterized, consistently, both by measurements of the two coexisting concentrations, c(T), and by measuring the cloud temperatures for various initial concentrations. We estimate that the critical concentration, cc, is 244 mg of protein per ml solution. The coexistence curve is well represented by the absolute value of (c - cc)/cc = 5.2 square root (Tc - T)/Tc. Using the temperature dependence of the scattered light intensity along isochores parallel to the critical isochore, we estimated the location of the spinodal line and found it to have the form (c - cc)/cc = 3.0 square root (Tc - T)/Tc. The ratio of the widths of the coexistence curve and the spinodal line, (5.2/3.0), is close to the mean-field value square root 3. We have also observed the growth of large crystals of gamma II-crystallin in some of these aqueous solutions and have made preliminary observations as to the factors that promote or delay the onset of crystallization. These findings suggest that selected protein/water systems can serve as excellent model systems for the study of phase transitions and critical phenomena.

Animals↗
PubMed2006

Phase separation in an exactly solvable model binary solution with three-body interactions and intermolecular bonding.

A model is presented in which the bonds of a honeycomb lattice are covered by rodlike molecules of types AA and BB, molecular ends near a common site having both three-body interactions and orientation-dependent bonding between two A molecular ends and between an A and a B molecular end. Phase diagrams corresponding to the separation into AA-rich and BB-rich phases are calculated exactly. Depending on the relative strengths of the interactions, one of several qualitatively different types of phase diagrams can result, including diagrams containing phenomena such as a double critical point or two separate asymmetric closed loops. The model is essentially a limiting case of a previously considered ternary solution model, and it is equivalent to a two-component system of interacting A and B molecules on the sites of a kagomé lattice.

Journal Article↗
PubMed2004

Device for the reversed-phase separation and on-target deposition of peptides incorporating a hydrophobic sample barrier for matrix-assisted laser desorption/ionization mass spectrometry.

The separation of peptide mixtures from proteolytic cleavage is often necessary prior to mass spectrometry (MS) to enhance sensitivity and peptide mapping coverage. When buffers, salts, and other higher abundance peptides/contaminants are present, competition for charge during the electrospray ionization and matrix-assisted laser desorption/ionization (MALDI) processes can lead to ion suppression for the targeted analyte(s). In this note, a simple reversed-phase microcolumn sample separation and deposition device (Sep-Dep) is described. The use of this device improves or renders possible the analysis of complex or contaminated peptide mixtures by MALDI-MS. The method is simple and inexpensive and utilizes single-use low-cost Geloader-type columns packed with reversed-phase material. The device described utilizes an open column, allowing for a gradient or narrow-step gradient to be applied by any solvent delivery system or manually with a pipet. A key feature of the device is a deposition chamber that can be custom-built to hold any MALDI target. The Sep-Dep device is attached directly to an in-house vacuum line and draws solvent from the open-ended LC column. The elution of separated peptides is performed directly onto a target that has been treated with a hydrophobic barrier. This barrier effectively isolates fractions and improves the quality and morphology of the matrix crystals. The method produces efficient separations of proteolytic peptides, significantly reducing signal suppression effects in MALDI.

Amino Acid Sequence↗
PubMed1999

Phase separation in monolayers of pulmonary surfactant phospholipids at the air-water interface: composition and structure.

The phase behavior of monolayers containing the complete set of purified phospholipids (PPL) obtained from calf surfactant was investigated as a model for understanding the phase transitions that precede compression of pulmonary surfactant to high surface pressure. During compression, both fluorescence microscopy and Brewster angle microscopy (BAM) distinguished domains that separated from the surrounding film. Quantitative analysis of BAM grayscales indicated optical thicknesses for the PPL domains that were similar to the liquid condensed phase for dipalmitoyl phosphatidylcholine (DPPC), the most abundant component of pulmonary surfactant, and higher and less variable with surface pressure than for the surrounding film. BAM also showed the optical anisotropy that indicates long-range orientational order of tilted lipid chains for the domains, but not for the surrounding film. Fluorescence microscopy shows that addition of DPPC to the PPL increased the area of the domains. At fixed surface pressures from 20-40 mN/m, the total area of each phase grew in proportion with the mol fraction of DPPC. This constant variation allowed analysis of the DPPC mol fraction in each phase, construction of a simple phase diagram, and calculation of the molecular area for each phase. Our results indicate that the phase surrounding the domains is more expanded and compressible, and contains reduced amounts of DPPC in addition to the other phospholipids. The domains contain a mol fraction for DPPC of at least 96%.

1,2-Dipalmitoylphosphatidylcholine↗
PubMed1985

Phase separation in frozen erythrocyte membrane preparations.

The reversible formation of a lipid-like phase in frozen preparations of erythrocyte membranes has been studied by X-ray diffraction and by electron microscopy of freeze-fracture replicas. The observations provide strong evidence for lateral migration or displacement at specific temperatures of intra-membrane particles. This creates large areas of particle-free membranes which fracture preferentially so as to dominate the freeze-fracture image.

Erythrocyte Membrane↗
PubMed1986

Model of protein conformation in the reversed-phase separation of interleukin-2 muteins.

Thirty muteins* of interleukin-2 were studied by reversed-phase high-performance liquid chromatography in a gradient mode. Values of the stoichiometry-factor Z [from Geng and Regnier, J. Chromatogr., 296 (1984) 15] varied over a 2.5-fold range for these proteins of similar molecular weight and composition. It is proposed that the more hydrophobic and/or more stable proteins have smaller values of Z while the larger Z-values correspond to a higher degree of protein unfolding during reversed-phase retention. The practical utility of this approach was demonstrated when these Z values were used to predict correctly a reversal in elution order for two closely related interleukin-2 muteins, when shallower gradients were used.

Amino Acids↗
PubMed2001

Reversibly soluble macroaffinity ligand in aqueous two-phase separation of enzymes.

Use of alginate as a free bioligand incorporated in an aqueous two-phase system of polyethylene glycol 6000-salt resulted in considerable purification of wheat germ alpha-amylase and sweet potato beta-amylase from their crude extracts. The elution of the enzyme from the free bioligand was facilitated by exploiting the fact that alginate can be reversibly precipitated in the presence of Ca2+. alpha-Amylase could be purified 42-fold with 92% activity recovery. beta-Amylase on the other hand could be purified 43-fold with 90% recovery. Both purified enzymes showed a single band on sodium dodecylsulfate-polyacrylamide gel electrophoresis.

Alginates↗
PubMed2003

Coarsening dynamics of phase-separating systems.

When a system such as a binary liquid is cooled rapidly from a homogeneous phase into a two-phase region, domains of the two equilibrium phases form and grow ('coarsen') with time. In the absence of an external drive, such as gravity or an imposed shear flow, a dynamical-scaling regime emerges in which the domain morphology is statistically self-similar at different times, up to an overall length-scale (coarsening scale) that grows with time. In the first part of the paper, the scaling phenomenology will be reviewed and the time-dependence of the coarsening scale will be discussed in the context of a number of different physical systems and scaling regimes. In the second part, the influence of an external drive, in particular a shear flow, will be addressed and recent developments reviewed. Interesting open questions include the late-time behaviour under shear and whether the coarsening continues indefinitely or is ultimately arrested by the shear flow.

Journal Article↗