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PubMed2004

Effect of the application of acid treated biosolids on marigold (Tagetes erecta) development.

The use of biosolids for land restoration and crop production is a potential solution to improve food production worldwide. However, the microbial content usually restricts its application in crops that are consumed uncooked. An alternative practice is their use in floriculture. In this study, the effects of acid treated sludge on the development of marigold (Tagetes erecta) plants were evaluated under green house conditions. Biosolids were applied at the agronomic rate (AR) based on nitrogen requirements of the marigold. In addition, higher rates (10 and 20xAR) were applied to study their effect on the plants. Biosolids were mixed with tepetate (hard volcanic indurate layers). Due to its origin, tepetate lacks nutrients and organic matter to adequately support plant development. The best treatment for marigold development was 10xAR, as plants reached an average height of 107 cm, with a growing speed of 1.01 cm/d, which is 20 times more than the control. Plants that received no biosolids produced 0.25 buds and 0.5 flowers per plant. In contrast, AR and 10xAR showed a production that ranged from 2 to 29 buds/plant and 4 to 15 flowers/plant, respectively. These results indicate the viability of reusing acid treated biosolids to improve marigold development.

Conservation of Natural Resources↗

PubMed2006

Genomics of plant ABC transporters: the alphabet of photosynthetic life forms or just holes in membranes?

The large number of ABC transporters in the Arabidopsis genome was made responsible for known as well as unexpected aspects in plant development. The combination of classical transport experiments with functional genomics approaches helped unravel some of these effects. Yet questions concerning the importance of this large number of ABC transporters in eukaryotic photosynthesizing organisms remain open. Phylogenomic analyses of whole genome sequence data reveal comparable sizes and composition between algae and higher plants within this protein family. Although this indicates the significance of ABC transporters in plants, several other questions remain to be answered.

ATP-Binding Cassette Transporters↗

PubMed2002

Towards understanding the role of membrane-bound endo-beta-1,4-glucanases in cellulose biosynthesis.

Recent studies have highlighted the involvement of membrane-anchored endo-beta-1,4-glucanases in cellulose biosynthesis in plants, suggesting that there are parallels with Agrobacterium tumefaciens and other bacteria which also require endo-beta-1,4-glucanases for cellulose synthesis. This review summarises recent literature on endo-beta-1,4-glucanases and their role in plant development and addresses the possible functions of membrane-anchored isoforms in the synthesis of cellulose.

Agrobacterium tumefaciens↗

PubMed1994

The abscisic acid induction of a novel peroxidase is antagonized by cytokinin in Spirodela polyrrhiza L.

The growth regulator abscisic acid (ABA) can be used to induce dormant bud structures (turions) in the duckweed Spirodela polyrrhiza L. In this paper we show that during this process, ABA rapidly induces elevated levels of mRNA transcripts encoding a novel basic peroxidase. In addition, we show that in the presence of the cytokinin kinetin the maintained increase is attenuated. Kinetin not only totally inhibits the induction of turions by ABA but also alleviates ABA-induced growth inhibition. This antagonism of an ABA-induced gene by a cytokinin correlates with an easily observable antagonistic effect of these two hormones on plant morphogenesis. These data contribute to a growing body of evidence linking growth regulators with changes in peroxidase gene expression and to the concept of pairs of hormones playing antagonistic roles during plant development. Finally, we discuss the possible functions that peroxidases could have during ABA-induced turion formation and growth inhibition.

Abscisic Acid↗

PubMed2004

Polyamines and somatic embryogenesis in two Vitis vinifera cultivars.

Polyamine content and activities of enzymes of polyamine biosynthesis were assayed during somatic embryogenesis in Vitis vinifera callus cultures of Chardonnay and Brachetto 'a grappolo lungo' (Brachetto g.l.) cultivars. The analyses were carried out on embryogenic callus samples, embryos at different stages and developing plants. Polyamine content, both in the free and PCA-soluble conjugated form, was higher in Brachetto g.l. than in Chardonnay, and putrescine was present at higher concentrations than the other polyamines. In all samples of both cultivars, ornithine decarboxylase activity (ODC, EC 4.1.1.17) was higher than arginine decarboxylase (ADC, EC 4.1.1.19), with a maximum in developing plant roots. S-Adenosylmethionine decarboxylase (SAMDC, EC 4.1.1.50) activity displayed a similar trend. The activities of all three enzymes were detected both in the supernatant and pellet fractions, indicating for the first time the presence of SAMDC activity in the particulate fraction. Particularly in the Chardonnay cultivar, an increase in the mRNAs expression patterns of ODC and SAMDC during morphogenesis from small embryos to plantlets was detected by northern blot, suggesting a direct correlation with enzymatic activities.

Journal Article↗

PubMed1997

A putative leucine-rich repeat receptor kinase involved in brassinosteroid signal transduction.

Brassinosteroids are a class of growth-promoting regulators that play a key role throughout plant development. Despite their importance, nothing is known of the mechanism of action of these steroid hormones. We describe the identification of 18 Arabidopsis dwarf mutants that are unable to respond to exogenously added brassinosteroid, a phenotype that might be expected for brassinosteroid signaling mutants. All 18 mutations define alleles of a single previously described gene, BRI1. We cloned BRI1 and examined its expression pattern. It encodes a ubiquitously expressed putative receptor kinase. The extracellular domain contains 25 tandem leucine-rich repeats that resemble repeats found in animal hormone receptors, plant disease resistance genes, and genes involved in unknown signaling pathways controlling plant development.

Arabidopsis↗

PubMed1999

An Essay on Juvenility, Phase Change, and Heteroblasty in Seed Plants.

Phase change (the change from nonreproductive to reproductive status) and heteroblasty (ontogenetic changes in vegetative metamers) are two determinants of longitudinal asymmetry in plants. These concepts are critically important to understanding the regulation of plant development as well as morphological evolution and life-history variation. Since Goebel, the two have been conflated. This article questions how phase change and heteroblasty are delimited and explores some of the problems that arise in the explicit or implicit link between them, given that several lines of evidence indicate that they are distinct and independent facets of plant development. It is suggested that problems are perpetuated through use of the terms "juvenile" and "adult" to describe both phenomena.

Journal Article↗

PubMed2002

Lignin deposition and associated changes in anatomy, enzyme activity, gene expression, and ruminal degradability in stems of tall fescue at different developmental stages.

Stem tissues of tall fescue (Festuca arundinacea Schreb.) were sampled at three elongation stages and three reproductive stages. Anatomical analysis showed the deposition of guaiacyl (G) and syringyl (S) lignin during plant development and the formation of a lignified sclerenchyma ring. A dramatic increase in Klason lignin content was found from elongation stage to reproductive stage. Lignin composition analyzed by gas chromatography-mass spectrometry revealed that S lignin content and S/G ratio increased with stem development, but contents of p-hydroxyphenyl (H) and G lignins decreased during the same period. S lignin content and S/G ratio also increased from the younger upper internode down to the older basal internode of the stem, but G and H lignin decreased in parallel. Relative O-methyltransferase activities increased during stem development and in parallel with the lignification process of stem. The pattern of enzyme activity during development varied with the choice of substrate, with highest activities seen when substrates were caffeoylaldehyde and 5-hydroxyferulic acid, and lowest activities were seen when caffeic acid and 5-hydroxyconiferyl alcohol were used as substrates. The expression of caffeic acid O-methyltransferase and cinnamyl alcohol dehydrogenase genes increased during the stem elongation stage and remained at high levels during the reproductive stages. The changes at anatomical, metabolic, and molecular levels during plant development were closely associated with lignification and degradability. This study provides an integrated picture of the molecular and chemical events that accompany changes in lignin deposition and ruminal degradability.

Alcohol Oxidoreductases↗

PubMed2005

Ectopic expression of pumpkin gibberellin oxidases alters gibberellin biosynthesis and development of transgenic Arabidopsis plants.

Immature pumpkin (Cucurbita maxima) seeds contain gibberellin (GA) oxidases with unique catalytic properties resulting in GAs of unknown function for plant growth and development. Overexpression of pumpkin GA 7-oxidase (CmGA7ox) in Arabidopsis (Arabidopsis thaliana) resulted in seedlings with elongated roots, taller plants that flower earlier with only a little increase in bioactive GA4 levels compared to control plants. In the same way, overexpression of the pumpkin GA 3-oxidase1 (CmGA3ox1) resulted in a GA overdose phenotype with increased levels of endogenous GA4. This indicates that, in Arabidopsis, 7-oxidation and 3-oxidation are rate-limiting steps in GA plant hormone biosynthesis that control plant development. With an opposite effect, overexpression of pumpkin seed-specific GA 20-oxidase1 (CmGA20ox1) in Arabidopsis resulted in dwarfed plants that flower late with reduced levels of GA4 and increased levels of physiological inactive GA17 and GA25 and unexpected GA34 levels. Severe dwarfed plants were obtained by overexpression of the pumpkin GA 2-oxidase1 (CmGA2ox1) in Arabidopsis. This dramatic change in phenotype was accompanied by a considerable decrease in the levels of bioactive GA4 and an increase in the corresponding inactivation product GA34 in comparison to control plants. In this study, we demonstrate the potential of four pumpkin GA oxidase-encoding genes to modulate the GA plant hormone pool and alter plant stature and development.

Arabidopsis↗

PubMed2000

[Influence of root module design on growth and development of plants].

Wheat crop was grown in various root modules (RM) in which nutritional solution was injected through porous membrane (2-6 microns). Seeds were laid on the surface of membrane or in pearlite covering the membrane. Root modules 1 and 3 contained ceramic porous tubes 10 mm and 22 mm in diameter, respectively. RM 2 was outfitted with a porous titanium plate, RM 4--with a porous ceramic tube (Ø 10 mm) buried in pearlite, and RM 5--with a porous titanium plate under the 2.5 cm thick layer of pearlite. The area of membrane surface per one plant was equal to 3 cm2 in RM 1 and about 17 cm2 RM 2 and 3. Pearlite volume per a plant made up about 40 cm2 in RM 4.5. The object of study was Triticum aestivum L., sp. Super Dwarf. The plants grew for 49 days under the white light of luminescent lamps at water potential (WP) = -0.4, -3.0 and -5.0 kPa. WP of pearlite equal, dry mass and anticipated productivity of the crop were much higher as compared to RM without pearlite. Significant reduction of these parameters was reflective of WP drop no matter the RM type. However, it was more expressed at -5 kPa. In RM filled with pearlite the mass and productivity of crop reduced at -5.0 kPa. Design of RM essentially altered the volumetric spread of roots. Thus, root math was formed immediately on flat porous plates, commonly below the bare tubes and both on top and on the bottom of RM with pearlite. These data can help development of RM for space greenhouses.

Botany↗

PubMed1996

QTL mapping and quantitative disease resistance in plants.

Quantitative trait locus (QTL) mapping is a highly effective approach for studying genetically complex forms of plant disease resistance. With QTL mapping, the roles of specific resistance loci can be described, race-specificity of partial resistance genes can be assessed, and interactions between resistance genes, plant development, and the environment can be analyzed. Outstanding examples include: quantitative resistance to the rice blast fungus, late blight of potato, gray leaf spot of maize, bacterial wilt of tomato, and the soybean cyst nematode. These studies provide insights into the number of quantitative resistance loci involved in complex disease resistance, epistatic and environmental interactions, race-specificity of partial resistance loci, interactions between pathogen biology, plant development and biochemistry, and the relationship between qualitative and quantitative loci. QTL mapping also provides a framework for marker-assisted selection of complex disease resistance characters and the positional cloning of partial resistance genes.

Journal Article↗

PubMed2005

Overexpression of RAN1 in rice and Arabidopsis alters primordial meristem, mitotic progress, and sensitivity to auxin.

Ran is an evolutionarily conserved eukaryotic GTPase. We previously identified a cDNA of TaRAN1, a novel Ran GTPase homologous gene in wheat (Triticum aestivum) and demonstrated that TaRAN1 is associated with regulation of genome integrity and cell division in yeast (Saccharomyces cerevisiae) systems. However, much less is known about the function of RAN in plant development. To analyze the possible biological roles of Ran GTPase, we overexpressed TaRAN1 in transgenic Arabidopsis (Arabidopsis thaliana) and rice (Oryza sativa). TaRAN1 overexpression increased the proportion of cells in the G2 phase of the cell cycle, which resulted in an elevated mitotic index and prolonged life cycle. Furthermore, it led to increased primordial tissue, reduced number of lateral roots, and stimulated hypersensitivity to exogenous auxin. The results suggest that Ran protein was involved in the regulation of mitotic progress, either in the shoot apical meristem or the root meristem zone in plants, where auxin signaling is involved. This article determines the function of RAN in plant development mediated by the cell cycle and its novel role in meristem initiation mediated by auxin signaling.

Arabidopsis↗

PubMed2005

Plant microRNA: a small regulatory molecule with big impact.

MicroRNAs (miRNAs) are an abundant new class of non-coding approximately 20-24 nt small RNAs. To date, 872 miRNAs, belonging to 42 families, have been identified in 71 plant species by genetic screening, direct cloning after isolation of small RNAs, computational strategy, and expressed sequence tag (EST) analysis. Many plant miRNAs are evolutionarily conserved from species to species, some from angiosperms to mosses. miRNAs may originate from inverted duplications of target gene sequences in plants. Although miRNA precursors display high variability, their mature sequences display extensive sequence complementarity to their target mRNA sequences. miRNAs play important roles in plant post-transcriptional gene regulation by targeting mRNAs for cleavage or repressing translation. miRNAs are involved in plant development, signal transduction, protein degradation, response to environmental stress and pathogen invasion, and regulate their own biogenesis. miRNAs regulate the expression of many important genes; a majority of these genes are transcriptional factors.

Gene Expression Regulation, Plant↗

PubMed2003

Markers and signals associated with nitrogen assimilation in higher plants.

A key concept underpinning current understanding of the carbon/nitrogen (C/N) interaction in plants is that the capacity for N assimilation is aligned to nutrient availability and requirements by the integrated perception of signals from hormones, nitrate, sugars, organic acids, and amino acids. Studies on the nature and integration of these signals over the last ten years has revealed a complex network of controls brokered by an interplay of C and N signals. These controls not only act to orchestrate the relative rates of C and N assimilation and carbohydrate and amino acid production, but they also have a significant influence on plant development. Amino acids are the hub around which the processes of N assimilation, associated C metabolism, photorespiration, export of organic N from the leaf, and the synthesis of nitrogenous end-products revolve. Since specific major amino acids or their relative ratios are modulated differentially by photorespiration and N assimilation, even though these processes are tightly intermeshed, they are potentially powerful markers for metabolite profiling and metabolomics approaches to the study of plant biology. Moreover, while minor amino acids show marked diurnal rhythms, their contents fluctuate in a co-ordinated manner. It is probable that factors associated with early events and processes in C and N assimilation influence the relative composition of minor amino acids.

Amino Acids↗

PubMed2004

Expression of cytokinin biosynthetic isopentenyltransferase genes in Arabidopsis: tissue specificity and regulation by auxin, cytokinin, and nitrate.

The rate-limiting step of cytokinin biosynthesis in Arabidopsis thaliana Heynh. is catalyzed by ATP/ADP isopentenyltransferases, A. thaliana IsoPentenyl Transferase (AtIPT)1, and AtIPT4, and by their homologs AtIPT3, AtIPT5, AtIPT6, AtIPT7, and AtIPT8. To understand the dynamics of cytokinins in plant development, we comprehensively analyzed the expression of isopentenyltransferase genes of Arabidopsis. Examination of their mRNA levels and the expression patterns of the beta-glucuronidase (GUS) gene fused to the regulatory sequence of each AtIPT gene revealed a specific expression pattern of each gene. The predominant expression patterns were as follows: AtIPT1::GUS, xylem precursor cell files in the root tip, leaf axils, ovules, and immature seeds; AtIPT3::GUS, phloem tissues; AtIPT4::GUS and AtIPT8::GUS, immature seeds with highest expression in the chalazal endosperm (CZE); AtIPT5::GUS, root primordia, columella root caps, upper part of young inflorescences, and fruit abscission zones; AtIPT7::GUS, endodermis of the root elongation zone, trichomes on young leaves, and some pollen tubes. AtIPT1, AtIPT3, AtIPT5, and AtIPT7 were downregulated by cytokinins within 4 h. AtIPT5 and AtIPT7 was upregulated by auxin within 4 h in roots. AtIPT3 was upregulated within 1 h after an application of nitrate to mineral-starved Arabidopsis plants. The upregulation by nitrate did not require de novo protein synthesis. We also examined the expression of two genes for tRNA isopentenyltransferases, AtIPT2 and AtIPT9, which can also be involved in cytokinin biosynthesis. They were expressed ubiquitously, with highest expression in proliferating tissues. These findings are discussed in relation to the role of cytokinins in plant development.

Alkyl and Aryl Transferases↗

PubMed2004

Chromatin techniques for plant cells.

A large number of recent studies have demonstrated that many important aspects of plant development are regulated by heritable changes in gene expression that do not involve changes in DNA sequence. Rather, these regulatory mechanisms involve modifications of chromatin structure that affect the accessibility of target genes to regulatory factors that can control their expression. The central component of chromatin is the nucleosome, containing the highly conserved histone proteins that are known to be subject to a wide range of post-translational modifications, which act as recognition codes for the binding of chromatin-associated factors. In addition to these histone modifications, DNA methylation can also have a dramatic influence on gene expression. To accommodate the burgeoning interest of the plant science community in the epigenetic control of plant development, a series of methods used routinely in our laboratories have been compiled that can facilitate the characterization of putative chromatin-binding factors at the biochemical, molecular and cellular levels.

Chromatin↗

PubMed1965

ENZYME FORMATION IN HIGHER-PLANT TISSUES. DEVELOPMENT OF INVERTASE AND ASCORBATE-OXIDASE ACTIVITIES IN MATURE STORAGE TISSUE OF HELIANTHUS TUBEROSUS L.

1. Washed aerated disks of mature tubers of H. tuberosus developed invertase and ascorbate-oxidase activities; this effect was not due to contaminating micro-organisms. 2. The use of specific inhibitors showed that such development was an expression of protein synthesis. 3. There was no visual evidence of cell division during induction of the enzymes. 4. The invertase could not be solubilized; most of the ascorbate oxidase was freely soluble.

Ascorbic Acid↗

PubMed2001

ELF3 encodes a circadian clock-regulated nuclear protein that functions in an Arabidopsis PHYB signal transduction pathway.

Many aspects of plant development are regulated by photoreceptor function and the circadian clock. Loss-of-function mutations in the Arabidopsis EARLY FLOWERING 3 (ELF3) and PHYTOCHROME B (PHYB) genes cause early flowering and influence the activity of circadian clock-regulated processes. We demonstrate here that the relative abundance of the ELF3 protein, which is a novel nucleus-localized protein, displays circadian regulation that follows the pattern of circadian accumulation of ELF3 transcript. Furthermore, the ELF3 protein interacts with PHYB in the yeast two-hybrid assay and in vitro. Genetic analyses show that ELF3 requires PHYB function in early morphogenesis but not for the regulation of flowering time. This suggests that ELF3 is a component of a PHYB signaling complex that controls early events in plant development but that ELF3 and PHYB control flowering via independent signal transduction pathways.

Amino Acid Sequence↗