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Variability in nocturnal nitrogen oxide processing and its role in regional air quality.

Nitrogen oxides in the lower troposphere catalyze the photochemical production of ozone (O3) pollution during the day but react to form nitric acid, oxidize hydrocarbons, and remove O3 at night. A key nocturnal reaction is the heterogeneous hydrolysis of dinitrogen pentoxide, N2O5. We report aircraft measurements of NO3 and N2O5, which show that the N2O5 uptake coefficient, g(N2O5), on aerosol particles is highly variable and depends strongly on aerosol composition, particularly sulfate content. The results have implications for the quantification of regional-scale O3 production and suggest a stronger interaction between anthropogenic sulfur and nitrogen oxide emissions than previously recognized.

Journal Article↗

Photodegradation of inclusion complexes of isradipine with methyl-beta-cyclodextrin.

The paper presents results of the studies on photochemical decomposition of isradipine (IS) and its liquid inclusion complexes with methyl-beta-cyclodextrin (M-betaCD). The process of photodegradation was assessed by the methods of UV spectrophotometry, HPLC (reverse-phase) and HPTLC (normal phase) chromatographic methods. The process of photodegradation of IS was analysed in the conditions of version I of the document of International Chemical Harmonization (ICH)-HBO-200 lamp. Quantitative evaluation of the photochemical decomposition was performed on the basis of the calculated photodegradation rate constant (k), half-life period (t0.5) and time of degradation of 10% of the compound (t0.1). Formation of inclusion complexes of IS with M-betaCD was proved to increase twice the photostability of the drug. The analytical methods used were subjected to a validation procedure in which the limits of detectability and determinability as well as specificity, precision and sensitivity of the method were determined.

Calcium Channel Blockers↗

Experimental studies of environmental processes: A practical course in environmental chemistry.

BACKGROUND, AIM AND SCOPE: To predict the fate of persistent organic pollutants in the environment, several aspects have to be considered carefully: their basic physical and chemical properties, distribution, transport within and among compartments, biotic and abiotic transformation processes, as well as effects on living organisms including humans. Laboratory simulation of the processes that control the chemical behavior of organic compounds in the environment is often desirable for deeper understanding, as well as for determination of basic characteristics required for successful environmental modeling. However, laboratory exercises targeted on the simulations of environmental processes are very rare. MATERIALS AND METHODS: Practical training was designed as a supplement to the course of Environmental Chemistry. The whole course consists of seven experiments in a logical sequence-partition coefficient (n-octanol-water), Henry's Law Constant, soil sorption, volatilization from soil, bioaccumulation, photochemical degradation and microbial degradation. The objective is to gain knowledge of the principal physical processes, by which chemicals move, concentrate and dissipate, as well as of the principal routes of biotic and abiotic degradation. RESULTS: New practical course reflecting current topics and approaches of environmental chemistry was introduced to M.S. students at Masaryk University in 2004. Detailed description of the course including experimental techniques is provided in this article. DISCUSSION: Lab course employs basic techniques for the study of environmental processes to strengthen links between the theory taught in the lectures of Environmental Chemistry, laboratory simulations, and processes in the real word. CONCLUSIONS: A significant effort towards developing this laboratory exercise was devoted with the goal of providing a context for teaching both fundamental theories and environmental techniques, strengthening the link between the theory and processes in the real world, providing a scientific background for understanding the environmental problems, challenging the students with the experience of simulating the physical, chemical, and biological processes that control contaminant fate and transport in the environment, showing the students importance of the interdisciplinary approach and giving the students a taste of the excitement and challenge of the research in real conditions. RECOMMENDATIONS AND PERSPECTIVES: The laboratory course was taught with a great success, and it became a part of recommended study plans for M.S. students in Environmental Chemistry and Ecotoxicology. Suggested experiments proved to be suitable for simulation of biotic and abiotic transformations, bioaccumulation, as well as distribution and transport processes in a student laboratory with good reproducibility and accuracy. The response of the students was very positive.

Curriculum↗

An assessment of the emissions inventory processing systems EMS-2001 and SMOKE in grid-based air quality models.

In the United States, emission processing models such as Emissions Modeling System-2001 (EMS-2001), Emissions Preprocessor System-Version 2.5 (EPS2.5), and the Sparse Matrix Operator Kernel Emissions (SMOKE) model are currently being used to generate gridded, hourly, speciated emission inputs for urban and regional-scale photochemical models from aggregated pollutant inventories. In this study, two models, EMS-2001 and SMOKE, were applied with their default internal data sets to process a common inventory database for a high ozone (O3) episode over the eastern United States using the Carbon Bond IV (CB4) chemical speciation mechanism. A comparison of the emissions processed by these systems shows differences in all three of the major processing steps performed by the two models (i.e., in temporal allocation, spatial allocation, and chemical speciation). Results from a simulation with a photochemical model using these two sets of emissions indicate differences on the order of +/- 20 ppb in the predicted 1-hr daily maximum O3 concentrations. It is therefore critical to develop and implement more common and synchronized temporal, spatial, and speciation cross-reference systems such that the processes within each emissions model converge toward reasonably similar results. This would also help to increase confidence in the validity of photochemical grid model results by reducing one aspect of modeling uncertainty.

Air Pollutants↗

Covalent photochemical functionalization of amorphous carbon thin films for integrated real-time biosensing.

Recent studies have demonstrated that carbon, in the form of diamond, can be functionalized with molecular and/or biomolecular species to yield interfaces exhibiting extremely high stability and selectivity in binding to target biomolecules in solution. However, diamond and most other crystalline forms of carbon involve high-temperature deposition or processing steps that restrict their ability to be integrated with other materials. Here, we demonstrate that photochemical functionalization of amorphous carbon films followed by covalent immobilization of DNA yields highly stable surfaces with excellent biomolecular recognition properties that can be used for real-time biological detection. Carbon films deposited onto substrates at 300 K were functionalized with organic alkenes bearing protected amine groups and characterized using X-ray photoelectron spectroscopy and Fourier transform infrared spectroscopy. The functionalized carbon surfaces were covalently linked to DNA oligonucleotides. Measurements show very high selectivity for binding to the complementary sequence, and a high density of hybridizing DNA molecules. Samples repeatedly hybridized and denatured 25 times showed no significant degradation. The ability to use amorphous carbon films as a basis for real-time biosensing is demonstrated by coating quartz crystal microbalance (QCM) crystals with a thin carbon film and using this for covalent modification with DNA. Measurements of the resonance frequency show the ability to detect DNA hybridization in real time with a detection limit of <3% of a monolayer, with a high degree of reversibility. These results demonstrate that functionalized films of amorphous carbon can be used as a chemically stable platform for integrated biosensing using only room-temperature processing steps.

Biosensing Techniques↗

Evidence for trans-cis isomerization of the p-coumaric acid chromophore as the photochemical basis of the photocycle of photoactive yellow protein.

Analysis of the chromophore p-coumaric acid, extracted from the ground state and the long-lived blue-shifted photocycle intermediate of photoactive yellow protein, shows that the chromophore is reversibly converted from the trans to the cis configuration, while progressing through the photocycle. The detection of the trans and cis isomers was carried out by high performance capillary zone electrophoresis and further substantiated by 1H NMR spectroscopy. The data presented here establish the photo-isomerization of the vinyl double bond in the chromophore as the photochemical basis for the photocycle of photoactive yellow protein, a eubacterial photosensory protein. A similar isomerization process occurs in the structurally very different sensory rhodopsins, offering an explanation for the strong spectroscopic similarities between photoactive yellow protein and the sensory rhodopsins. This is the first demonstration of light-induced isomerization of a chromophore double bond as the photochemical basis for photosensing in the domain of Bacteria.

Bacterial Proteins↗

Polyoxometalate sensitization in mechanistic studies of photochemical reactions: the decatungstate anion as a reference sensitizer for photoinduced free radical oxygenations of organic compounds.

The photosensitized oxygenation of organic molecules plays a key role in numerous processes of biological and industrial significance, such as, for example, photodynamic action and photodegradation of polymers. These reactions proceed either via quenching by the substrate of photophysically generated singlet oxygen, O2(1deltag), or via addition of ground state oxygen to photochemically generated radicals derived from the substrate, or via both pathways. The evaluation of the contributions of both mechanisms to the overall process requires reference sensitizers that exclusively induce one of the corresponding reactions. Some compounds are known to produce singlet oxygen with unit efficiency, but no references to sensitizers producing free radicals but no singlet oxygen have been found so far. In this work, we propose to use the decatungstate anion, W10O32(4-), as a first reference sensitizer for free radical oxygenations of organic molecules. A combination of time-resolved and steady-state studies has been performed to compare the photo-oxygenation of simple reference compounds, including 2-methyl-2-pentene and 2,3-dimethylbutene, by W10O32(4-) and by classical O2(1deltag) sensitizers, such as methylene blue and ruthenium complexes. It is demonstrated that W10O32(4-) sensitized oxygenation of organic compounds occurs exclusively by a free radical pathway, which differs clearly from both Type I and Type II oxygenations. Comparison with Type II reactions shows that: (i) in spite of their weaker reactivity, singlet oxygen mediated reactions are associated with larger photo-oxygenation yields than W10O32(4-) induced processes, due to the longer lifetime of the reactive species; and (ii) reaction of alkenes with both singlet oxygen and decatungstate features charge transfer interactions, whose magnitude is larger in the case of O2(1deltag).

Alkenes↗

Light effects on transport and excretion of bilirubin in newborns.

There is now firm evidence that phototherapy has the following effects on bilirubin metabolism in humans with unconjugated hyperbilirubinemia. It rather rapidly converts a substantial fraction of the normal toxic 4Z, 15Z form of bilirubin to the 4Z, 15E form, which probably is less toxic. Simultaneously it enhances the overall excretion of bilirubin by converting it to oxidation products and structural and configurational isomers that are excretable in bile and urine without the need for glucuronidation. We know that these reactions occur in vivo because we have synthesized the compounds involved and have identified them unambiguously in vivo in the tissues of jaundiced babies and rats undergoing phototherapy. It is unlikely that these photobiological effects on bilirubin metabolism and transport are restricted to babies undergoing purposeful phototherapy. All babies are exposed to visible light and all develop hyperbilirubinemia during early life, with many exhibiting jaundice. Because there is no lower intensity threshold for photochemical reactions, it seems probable that the photobiological effects described in this paper occur in most newborns to some degree. Furthermore, similar photoprocesses would be expected to occur in the approximately 2-5% of the population who have the benign condition known as Gilbert's syndrome, which is characterized by chronic mild unconjugated hyperbilirubinemia, particularly when they sunbathe. Clearly, in the particular instance of phototherapy of neonatal jaundice, blue light is therapeutic. In some respects it acts like a drug, almost like the ideal magic bullet, because it is specific for the target molecule and safe. The main limitation of phototherapy is that it is inefficient, a limitation that seems to be imposed by transport processes in the body and the optics of skin rather than by the photochemical reactions on which it depends.

Bilirubin↗

Surface patterning of polychloromethylstyrene films.

We describe and characterize a simple process for the fabrication of patterned materials on polychloromethylstyrene thin film surfaces under ambient conditions. Patterned deep UV exposure (approximately 60 mJcm(-2), 193 nm) efficiently oxidizes the surface C-Cl bonds of the polymer film, producing an aldehyde species as the major photoproduct. Reductive amination in the presence of ammonium ion and cyanoborohydride reductant selectively converts the aldehyde into an alkylamine, which leads to an amine reactivity template on the film surface. The amines formed are sufficiently reactive to selectively and covalently bind fluorescent dye or electroless Ni metal to the template, which results in negative tone features with micron-scale resolutions (mask limited) in each case. Spectroscopic characterizations of the polymer surface following the photochemical transformation, reductive amination, and grafting steps are presented in support of the process. A key advantage of the method is the use of safe solvents, such as water or simple alcohols, to effect the reductive amination and grafting reactions. This approach mitigates waste disposal and associated environmental concerns, increasing the attractiveness of our method for use with high-throughput track-line processing equipment.

Journal Article↗

Two-photon absorption-controlled multidose drug release: a novel approach for secondary cataract treatment.

Tens of millions of cataract surgeries are done every year and the number is increasing heavily. Posterior capsule opacification is the major postoperative complication with an incidence of 10 to 50% within 5 years, depending on the age of the patient. We present a novel approach for secondary cataract treatment in a noninvasive manner. Photochemically triggered drug release from a polymer enables repeated drug applications for cataract treatment years after implantation of the intraocular lens, just when needed. However, light in the visible spectral range must pass through the lens but must not induce drug release. We demonstrate that two-photon absorption photochemistry is a powerful tool to overcome this problem. With wavelengths in the visible regime, a photochemical reaction that requires energies in the UV is triggered. The high intensities needed for this process never occur in any lighting condition in daily lives, but may be easily obtained with focused laser beams routinely used in ophthalmology. The properties of the therapeutic system are specified and the function is demonstrated by in-vitro cell tests. Noninvasive multidose photochemically triggered drug release from implanted intraocular lenses carrying a drug depot may be a therapeutic as well as an economic choice to established treatments of secondary cataracts.

Cataract↗

Laboratory simulations of Titan's atmosphere: organic gases and aerosols.

Titan, the main satellite of Saturn, has been observed by remote sensing for many years, both from interplanetary probes (Pioneer and Voyager's flybys) and from the Earth. Its N2 atmosphere, containing a small fraction of CH4 (approximately 2%), with T approximately 90 K and P approximately 1.5 bar at the ground level, is irradiated by solar UV photons and deeply bombarded by energetic particles, i.e. Saturn mangetospheric electrons and protons, interplanetary electrons and cosmic rays. The resulting energy deposition, which takes place mainly below 1000 km, initiates chemical reactions which yield gaseous hydrocarbons and nitriles and, through polymerisation processes, solid aerosol particles which grow by coagulation and settle down to the ground. At the present time, photochemical models strongly require the results of specific laboratory studies. Chemical rate constants are not well known at low temperatures, charged-particle-induced reactions are difficult to model and laboratory simulations of atmospheric processes are therefore of great interest. Moreover, the synthesis of organic compounds which have not been detected to date provides valuable information for future observations. The origin and chemical composition of aerosols depend on the nature of chemical and energy sources. Their production from gaseous species may be monitored in laboratory chambers and their optical or microphysical properties compared to those deduced from the observations of Titan's atmosphere. The development of simulation chambers of Titan's extreme conditions is necessary for a better understanding of past and future observations. Space probes will sound Titan's atmosphere by remote sensing and in situ analysis in the near future (Cassini-Huygens mission). It appears necessary, as a preliminary step to test on-board experiments in such chambers, and as a final step, when new space data have been acquired, to use them for more general scientific purposes.

Aerosols↗

A photochemically driven molecular-level abacus

A molecular-level abacus-like system driven by light inputs has been designed in the form of a [2]rotaxane, comprising the pi-electron-donating macrocyclic polyether bis-p-phenylene-34-crown-10 (BPP34C10) and a dumbbell-shaped component that contains 1) a Ru(II) polypyridine complex as one of its stoppers in the form of a photoactive unit, 2) a p-terphenyl-type ring system as a rigid spacer, 3) a 4,4'-bipyridinium unit and a 3,3'-dimethyl-4,4'-bipyridinium unit as pi-electron-accepting stations, and 4) a tetraarylmethane group as the second stopper. The synthesis of the [2]rotaxane was accomplished in four successive stages. First of all, the dumbbell-shaped component of the [2]rotaxane was constructed by using conventional synthetic methodology to make 1) the so-called "west-side" comprised of the Ru(II) polypyridine complex linked by a bismethylene spacer to the p-terphenyl-type ring system terminated by a benzylic bromomethyl function and 2) the so-called "east-side" comprised of the tetraarylmethane group, attached by a polyether linkage to the bipyridinium unit, itself joined in turn by a trismethylene spacer to an incipient 3,3'-dimethyl-4,4'-bipyridinium unit. Next, 3) the "west-side" and "east-side" were fused together by means of an alkylation to give the dumbbell-shaped compound, which was 4) finally subjected to a thermodynamically driven slippage reaction, with BPP34C10 as the ring, to afford the [2]rotaxane. The structure of this interlocked molecular compound was characterized by mass spectrometry and NMR spectroscopy, which also established, along with cyclic voltammetry, the co-conformational behavior of the molecular shuttle. The stable translational isomer is the one in which the BPP34C10 component encircles the 4,4'-bipyridinium unit, in keeping with the fact that this station is a better pi-electron acceptor than the other station. This observation raises the question- can the BPP34C10 macrocycle be made to shuttle between the two stations by a sequence of photoinduced electron transfer processes? In order to find an answer to this question, the electrochemical, photophysical, and photochemical (under continuous and pulsed excitation) properties of the [2]rotaxane, its dumbbell-shaped component, and some model compounds containing electro- and photoactive units have been investigated. In an attempt to obtain the photoinduced abacus-like movement of the BPP34C10 macrocycle between the two stations, two strategies have been employed-one was based fully on processes that involved only the rotaxane components (intramolecular mechanism), while the other one required the help of external reactants (sacrificial mechanism). Both mechanisms imply a sequence of four steps (destabilization of the stable translational isomer, macrocyclic ring displacement, electronic reset, and nuclear reset) that have to compete with energy-wasteful steps. The results have demonstrated that photochemically driven switching can be performed successfully by the sacrificial mechanism, whereas, in the case of the intramolecular mechanism, it would appear that the electronic reset of the system is faster than the ring displacement.

Journal Article↗

Activation of Chloroplast NADP-linked Glyceraldehyde-3-Phosphate Dehydrogenase by the Ferredoxin/Thioredoxin System.

NADP-glyceraldehyde-3-P dehydrogenase of spinach (Spinacia oleracea) chloroplasts was activated by thioredoxin that was reduced either photochemically with ferredoxin and ferredoxin-thioredoxin reductase or chemically with dithiothreitol. The activation process that was observed with the soluble protein fraction from chloroplasts and with the purified regulatory form of the enzyme was slow relative to the rate of catalysis. The NAD-linked glyceraldehyde-3-P dehydrogenase activity that is also present in chloroplasts and in the purified enzyme preparation was not affected by reduced thioredoxin.When activated by dithiothreitol-reduced thioredoxin, the regulatory form of NADP-glyceraldehyde-3-P dehydrogenase was partly deactivated by oxidized glutathione. The enzyme activated by photochemically reduced thioredoxin was not appreciably affected by oxidized glutathione. The results suggest that although it resembles other regulatory enzymes in its requirements for light-dependent activation by the ferredoxin/thioredoxin system, NADP-glyceraldehyde-3-P dehydrogenase differs in its mode of deactivation and in its capacity for activation by enzyme effectors independently of thioredoxin.

Journal Article↗

Photochemical source of metals for sediments.

A mass budget study of major in-lake Al fluxes, palaeolimnological data on a >10,000 year old sediment record, and in situ photochemical experiments performed at Plesné Lake (Czech Republic) suggest that photochemical liberation of organically bound aluminum (Al) and iron (Fe) by solar radiation is a significant natural source of their ionic species for lakes and subsequent oxyhydroxides for sediments. The results show that photochemically induced transformation of dissolved Al and Fe to solid oxyhydroxides deposited to Plesné Lake sediment dominated (91 and 73%, respectively) their sedimentary flux throughout the preindustrial era, since soil formation initiated in the catchment. The following sequence of processes occurs: (i) soil organic acids dissolve and bind metals and export them from terrestrial to aquatic systems. (ii) Photochemical decomposition of organic-metal complexes liberates a significant portion (approximately 50% in Pleseé Lake) of organically bound Al and Fe as inorganic ions. (iii) The liberated ionic Al and Fe hydrolyze, precipitate as oxyhydroxide particles, and settle. We hypothesise that the same Al and Fe transporting process occurs in other lakes and coastal marine areas and is ecologically important because Al and Fe oxyhydroxides can bind trace metals and phosphorus.

Carbon↗

The influence of melanins on the photoperoxidation of lipids.

The influence of synthetic Dopa-melanin, natural-A, AB-melanin and pheomelanin has been studied for the following processes: (1) microsomal and liposomal lipid peroxidation induced by illumination with UV- and visible light; (2) interaction of melanin with the superoxide anion; and (3) chemiluminescence intensity of phospholipids in the presence and absence of melanins. It has been shown that (a) melanins can function as a scavenger of the superoxide anion radical O2-. (pseudo-superoxide dismutase) and (b) melanins protect microsomes and liposomes against lipid peroxidation which is due to the absorption of light energy (filter effect). Our data show that in the presence of melanins lipid peroxidation is significantly lower in comparison with the phospholipids incubated in the absence of melanins (except pheomelanin). The level of photoperoxidation of lipids was studied by means of the chemiluminescence method and by measurement of the malondialdehyde product. The results obtained by both methods indicate that melanin can effectively influence the process of lipid peroxidation. Mechanisms involved in the physical (optical screening) and photochemical reactions are proposed.

Chemical Phenomena↗

Probing shapes of bichromophoric metal-organic complexes using ion mobility mass spectrometry.

Ion mobility mass spectrometry (IM-MS) was used to probe the structures of several metal complexes carrying pendant chromophores. The three complexes investigated were the copper(II) complex Cu(DAC)2+ (DAC = 1,8-bis(9-methylanthracyl)cyclam, cyclam = 1,4,8,11-tetraazacyclotetradecane), the N-nitrosylated ligand DAC-NO, and the Roussin's red salt ester (mu-S,mu-S')-protoporphyrin-IX-bis(2-thioethyl ester)tetranitrosyldiiron (PPIX-RSE). From the IM-MS data coupled with theoretical calculations, it was found that [Cu(II)(DAC - H)]+ exists as a single conformer, with one anthracenyl group above the cyclam and the other below, similar to the crystal structure of Cu(II)(DAC)2+. The metal-free N-nitrosylated ligand (DAC-NO + H)+ has two conformations: one family of structures has one anthracenyl group above the cyclam and one below, while the other has both anthracenyl groups on the same side of the cyclam. These observations are consistent with 1H NMR data for the neutral DAC-NO complex that indicate the presence of two geometric isomers in solution. The third species, PPIX-RSE, has a porphyrin chromophore covalently linked to an Fe2S2(NO)4 cluster for use as a precursor for the photochemical delivery of nitric oxide in single- and two-photon excitation processes. Ion mobility indicates the presence of two (PPIX-RSE + H)+ conformations, consistent with the previous interpretation of the bimodal fluorescence lifetime decay seen for PPIX-RSE. DFT structures, in good agreement with the IM-MS cross sections, indicate two "bent" conformations with the planes of the porphyrin and Fe2S2 rings at different angles with respect to each other.

Journal Article↗

Zeolite membrane-based artificial photosynthetic assembly for long-lived charge separation.

Photochemically generated long-lived charge separation is the key step in processes that aim for conversion of solar energy into chemical energy. In this study, we focus on a Ru polypyridyl complex [(bpy)(2)Ru(II)L, bpy = bipyridine, L = 1,2-bis[4-(4(')-2,2(')-bipyridyl) ethene] encapsulated on the surface of a pinhole-free zeolite membrane by quaternization of L and surrounded with intrazeolitic bipyridinium ions (N,N'-trimethyl-2,2'-bipyridinium ion, 3DQ(2+)). Visible-light irradiation of the Ru complex side of the membrane in the presence of a sacrificial electron donor led to formation of PVS(-*) on the other side. Pore-blocking disilazane-based chemistry allows for Na(+) to migrate through the membrane to maintain charge balance, while keeping the 3DQ(2+) entrapped in the zeolite. These results provide encouragement that the zeolite membrane based architecture has the necessary features for not only incorporating molecular assemblies with long-lived charge separation but also for ready exploitation of the spatially separated charges to store visible light energy in chemical species.

Journal Article↗

The postnatal development of the oscillatory potentials of the electroretinogram. II. Photopic characteristics.

The postnatal development of the oscillatory potentials (OPs) of the rat's electroretinogram (ERG) was studied during more extreme photopic conditions. The appearance of the OPs was further delayed, by 1 to 3 days, compared to previously studied less photopic conditions. A rapid phase of development of the total OP activity occurred at the age of 15 days, which coincided with the physiological opening of the eye-lids. During maturation the first two OPs were enhanced while the later OPs were attenuated. The total OP activity culminated at the age of 30 days. These results strongly indicate that the rapid neuronal adaptive system appears and develops later than the slow photochemical one. Secondly, the fast phase of maturation of the neuronal adaptive process, as reflected in the OPs, seems to be dependent on environmental light. Thirdly, the findings support previous indications that two different systems seem to be responsible for the OPs in the rat and thus the earlier OPs to have different origins from those of the later ones.

Adaptation, Physiological↗