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At least 649 records · Page 36Linked to original sources

Lessons learned from randomised clinical trials in adult low grade glioma.

"Lesson" is a Middle English word that has been defined as "a passage from sacred writings read in a service of worship" as well as "something learned by study or experience". The term is quite appropriate in assessment of what has been learned from randomised trials in adult low-grade gliomas, since the treatment of these tumours has traditionally been guided as much by belief as by fact. Therefore, when assessing these trials we can apply the principles of hermeneutics. Thus, the first meaning of "lesson" given here can be described as literal, whereas the second may be seen as figurative. Since hermeneutics may also refer to an in-depth analysis of a particular text, the investigators will present their interpretation of data from randomised trials. The goal is to show that the lessons learned are not necessarily literal or dogmatic but can be much more allegorical in nature.

Adult↗

Retention of antimicrobial activity by human root surfaces after in situ subgingival irrigation with tetracycline HCl or chlorhexidine.

Substantivity of tetracycline HCl and chlorhexidine digluconate was assessed in extracted teeth. Fifty periodontally compromised teeth scheduled for extraction with probing depths ranging between 6 and 12 mm were root planed and then irrigated in situ with 1 of 4 solutions: tetracycline HCl at concentrations of 10 or 50 mg/ml, 0.12% chlorhexidine digluconate, or 0.9% sterile saline. Each tooth was exposed to 150 ml of the respective irrigation solution. Following extractions, the teeth were transferred to tris buffered saline and incubated at room temperature for 22 days. Incubation solutions were replaced at 24-hour intervals. Removed solutions were examined for desorbed antimicrobial activity using a microtiter assay in which bacterial growth was evaluated by optical density readings. Tetracycline HCl 50 mg/ml exhibited significantly greater antimicrobial activity than chlorhexidine digluconate for 12 days and greater than saline for 16 days. Tetracycline HCl 10 mg/ml exhibited significantly greater antimicrobial activity than chlorhexidine digluconate and saline for 4 days. Chlorhexidine digluconate did not exhibit any significant antimicrobial activity at any time point. Our findings demonstrate long-lasting substantivity of tetracycline HCl, but not chlorhexidine digluconate, by teeth exposed to a single episode of pocket irrigation of their periodontally-exposed roots. The amount of antimicrobial activity retained is proportional to the concentration of tetracycline HCl used for irrigation.

Adsorption↗

Dosimetric characteristics of the Leipzig surface applicators used in the high dose rate brachy radiotherapy.

The nucletron Leipzig applicator is designed for (HDR) 192Ir brachy radiotherapy of surface lesions. The dosimetric characteristics of this applicator were investigated using simulation method based on Monte Carlo N-particle (MCNP) code and phantom measurements. The simulation method was validated by comparing calculated dose rate distributions of nucletron microSelectron HDR 192Ir source against published data. Radiochromic films and metal-oxide-semiconductor field-effect transistor (MOSFET) detectors were used for phantom measurements. The double exposure technique, correcting the nonuniform film sensitivity, was applied in the film dosimetry. The linear fit of multiple readings with different irradiation times performed for each MOSFET detector measurement was used to obtain the dose rate of each measurement and to correct the source transit-time error. The film and MOSFET measurements have uncertainties of 3%-7% and 3%-5%, respectively. The dose rate distributions of the Leipzig applicator with 30 mm opening calculated by the validated MC method were verified by measurements of film and MOSFET detectors. Calculated two-dimensional planar dose rate distributions show similar patterns as the film measurement. MC calculated dose rate at a reference point defined at depth 5 mm on the applicator's central axis is 7% lower than the film and 3% higher than the MOSFET measurements. The dose rate of a Leipzig applicator with 30 mm opening at reference point is 0.241+/-3% cGy h(-1) U(-1). The MC calculated depth dose rates and profiles were tabulated for clinic use.

Algorithms↗

Evaluation of a diode array for QA measurements on a helical tomotherapy unit.

A helical tomotherapy system is used in our clinic to deliver intensity-modulated radiation therapy (IMRT) treatments. Since this machine is designed to deliver IMRT treatments, the traditional field flatness requirements are no longer applicable. This allows the unit to operate without a field flatness filter and consequently the 400 mm wide fan beam is highly inhomogeneous in intensity. The shape of this beam profile is mapped during machine commissioning and for quality assurance purposes the shape of the beam profile needs to be monitored. The use of a commercial diode array for quality assurance measurements is investigated. Central axis beam profiles were acquired at different depths using solid water built-up material. These profiles were compared with ion chamber scans taken in a water tank to test the accuracy of the diode array measurements. The sensitivity of the diode array to variations in the beam profile was checked. Over a seven week period, beam profiles were repeatedly measured. The observed variations are compared with those observed with an on-board beam profile monitor. The diode measurements were in agreement with the ion chamber scans. In the high dose, low gradient region the average ratio between the diode and ion chamber readings was 1.000 +/- 0.005 (+/- 1 standard deviation). In the penumbra region the agreement was poorer but all diodes passed the distance to agreement (DTA) requirement of 2 mm. The trend in the beam profile variations that was measured with the diode array device was in agreement with the on-board monitor. While the calculated amount of variation differs between the devices, both were sensitive to subtle variations in the beam profile. The diode array is a valuable tool to quickly and accurately monitor the beam profile on a helical tomotherapy unit.

Evaluation Studies as Topic↗

ExPASy: The proteomics server for in-depth protein knowledge and analysis.

The ExPASy (the Expert Protein Analysis System) World Wide Web server (http://www.expasy.org), is provided as a service to the life science community by a multidisciplinary team at the Swiss Institute of Bioinformatics (SIB). It provides access to a variety of databases and analytical tools dedicated to proteins and proteomics. ExPASy databases include SWISS-PROT and TrEMBL, SWISS-2DPAGE, PROSITE, ENZYME and the SWISS-MODEL repository. Analysis tools are available for specific tasks relevant to proteomics, similarity searches, pattern and profile searches, post-translational modification prediction, topology prediction, primary, secondary and tertiary structure analysis and sequence alignment. These databases and tools are tightly interlinked: a special emphasis is placed on integration of database entries with related resources developed at the SIB and elsewhere, and the proteomics tools have been designed to read the annotations in SWISS-PROT in order to enhance their predictions. ExPASy started to operate in 1993, as the first WWW server in the field of life sciences. In addition to the main site in Switzerland, seven mirror sites in different continents currently serve the user community.

Databases, Protein↗

A comparative cephalometric study of Class II, Division 1 nonextraction and extraction cases.

1. Cephalometric tracings of thirty Class II, Division 1 cases without extraction and twenty-five Class II, Division 1 cases with extraction were evaluated and statistically compared by means of the overbite depth indicator (ODI) and the anteroposterior dysplasia indicator (APDI). 2. The mean ODI in the nonextraction group, in particular, was significantly higher than that of the extraction group. 3. Three clinical examples were presented to demonstrate the values of ODI and APDI as adjuncts to cephalometric differential diagnosis. 4. With respect to the vertical component it may be concluded that the lower the ODI value from the normal mean a case presents, the greater the incidence of an extraction procedure as a compromise for the poor skeletal pattern. 5. With respect to the horizontal component the initial APDI reading indicates the severity of skeletal discrepancy. When the posttreatment APDI reading falls below the normal mean, a relapse is probable: the lower the figure a case possesses, the greater the chance of relapse. In such incidences an extraction procedure must be provided to ensure the stability of occlusion.

Adolescent↗

Sources of father-infant bonding beliefs: implications for childbirth educators.

Media presentations, anecdotal reports, and survey data suggest that the public is invested in the concept of father-infant bonding. The purpose of the present study was to examine information sources influencing persons' beliefs concerning father-infant bonding. As a follow-up to their participation in a larger survey (N = 244), 17 subjects responded to individual, in-depth interviews investigating the strength and direction of laypersons' bonding beliefs. Specifically, the investigator wanted to know what types and sources of evidence people would cite as influencing their beliefs about father-infant bonding. Although a majority of respondents expressed strong belief in both the phenomenon of bonding and the existence of scientific evidence to support it, only one subject had direct exposure to a professional journal article on the topic. Of those subjects able to cite information sources impacting upon their bonding beliefs, "general knowledge" was most frequently cited, followed by mass media, classes, and popular readings. These findings can explain the mismatch between the lack of unequivocal empirical evidence supportive of father-infant bonding and the strength and pervasiveness of the subjects' beliefs. Implications are discussed for medical personnel and childbirth and parent educators.

Adult↗

Intracerebral potentials to rare target and distractor auditory and visual stimuli. II. Medial, lateral and posterior temporal lobe.

Event-related potentials were recorded from 1221 sites in the medial, lateral and posterior aspects of the temporal lobe in 39 patients. Depth electrodes were implanted for about 4 days in order to localize seizure origin prior to surgical treatment. Subjects received an auditory discrimination task with target and non-target rare stimuli. In some cases, the target, distracting and frequent tones were completely balanced across blocks for pitch and volume. Some subjects also received an analogous visual discrimination task, or auditory tasks in which the rare target event was the omission of a tone, or the repetition of a tone within a series of alternating tones. In some subjects, the same auditory stimuli were delivered but the patient ignored them while reading. A complex field was recorded, indicating multiple components with overlapping time-courses, task correlates and generators. Two general patterns could be distinguished on the basis of their waveforms, latencies and task correlates. In the temporal pole and some middle temporal, posterior parahippocampal and fusiform gyrus sites, a sharp triphasic negative-positive-negative waveform with peaks at about 220-320-420 msec was usually observed. This wave was of relatively small amplitude and diffuse, and seldom inverted in polarity. It was multimodal but most prominent to auditory stimuli, appeared to remain when the stimuli were ignored, and was not apparent to repeated words and faces. A second broad, often monophasic, waveform peaking at about 380 msec was generated in the hippocampus, a limited region of the superior temporal sulcus, and (by inference) in the anterobasal temporal lobe (possible rhinal cortex). This waveform was of large amplitude, often highly focal, and could invert over short distances. It was equal to visual and auditory stimuli, was greatly diminished when the stimuli were ignored, and was also evoked by repeating words and faces. Preceding this waveform was a non-modality-specific negativity, possibly generated in rhinal cortex, and a visual-specific negativity in inferotemporal cortex. The early triphasic pattern may embody a diffuse non-specific orienting response that is also reflected in the scalp P3a. The late monophasic pattern may embody the cognitive closure that is also reflected in the scalp P3b or late positive component.

Acoustic Stimulation↗

Laser in situ keratomileusis correction of mixed astigmatism by bitoric ablation.

PURPOSE: To evaluate the effect of bitoric ablation (cross cylinder) in 1 eye and ordinary monotoric treatment in the contralateral eye of patients with mixed astigmatism. SETTING: Instituto Oftalmológico de Alicante and University of Miguel Hernández, Alicante, Spain. METHODS: A comparative consecutive study was initiated in 30 eyes of 15 patients with mixed astigmatism. In each patient, 1 eye was treated with bitoric ablation (Group 1) and the other eye was treated with monotoric ablation (Group 2). The decision to treat with bitoric or monotoric ablation was randomized. All patients were operated on by the same surgeon (J.L.A.) and examined by the same investigators (M.J.A., M.A.H.). All completed a 6-month follow-up. Visual acuity was estimated by transforming the Snellen chart readings into logMAR equivalents. In Group 1, theoretical ablation was also performed on glass slides by making 3 ablation profiles (positive, negative, and bitoric). RESULTS: There was a statistically significant improvement in the mean uncorrected visual acuity (UCVA), the mean spherical equivalent (SE), and the mean refractive cylinder in Group 1 (P<.0001, P =.04, P<.0001, respectively) and in the mean refractive cylinder in Group 2 (P =.01). Better results were obtained in the mean incremental change in UCVA, best corrected visual acuity, SE, and refractive cylinder in Group 1. CONCLUSIONS: Treatments to correct mixed astigmatism vary in ablation profiles and depth. Bitoric ablation appears to be safer, more effective, and more tissue sparing than the standard treatment.

Adult↗

Effects of quantum noise and binocular summation on dose requirements in stereoradiography.

In the case of a quantum-noise limited detector, signal detection theory suggests that stereoradiographic images can be acquired with one half of the per-image dose needed for a standard radiographic projection, as information from the two stereo images can be combined. Previously, film-screen stereoradiography has been performed using the same per-image dose as in projection radiography, i.e., doubling the total dose. In this paper, the assumption of a possible decrease in dose for stereoradiography was tested by a series of contrast-detail experiments, using phantom images acquired over a range of exposures. The number of visible details, the effective reduction of the dose, and the effective decrease in the threshold signal-to-noise ratio were determined using human observers under several display and viewing conditions. These results were averaged over five observers and compared with multiple readings by a single observer and with the results of an additional observer with limited stereoscopic acuity. Experimental results show that the total dose needed to produce a stereoradiographic image pair is approximately 1.1 times the dose needed for a single projection in standard radiography, indicating that under these conditions the human visual system demonstrates almost ideal binocular summation.

Depth Perception↗

Chronic fatigue syndrome: a qualitative investigation of patients' beliefs about the illness.

The chronic fatigue syndrome is a disabling chronic condition of uncertain cause. Previous studies have found that patients seen in hospital clinics with the syndrome often strongly believe that their illness is physical in nature and minimize the role of psychological and social factors. There is also evidence that patients cope by avoiding activity. However, almost all of these studies have assessed illness beliefs only by questionnaire. The aim of this study was to explore the nature and origin of illness beliefs in more detail using in-depth interviews and a qualitative analysis of patient responses. Sixty-six consecutive referrals meeting Oxford criteria for chronic fatigue syndrome were recruited. Analysis of responses indicated that, whereas the most commonly described explanation for the illness was a physical one, more than half the patients also believed "stress" had played a role. Patients believed that they could partially control the symptoms by reducing activity but felt helpless to influence the physical disease process and hence the course of the illness. Patients reported that they had arrived at these beliefs about the illness after prolonged reflection on their own experience combined with the reading of media reports, self help books, and patient group literature. The views of health professionals played a relatively small role. There is potentially a considerable opportunity to help patients arrive at a wider and more enabling explanation of their illness when they first present to primary care.

Adaptation, Psychological↗

The evolving doublecortin (DCX) superfamily.

BACKGROUND: Doublecortin (DCX) domains serve as protein-interaction platforms. Mutations in members of this protein superfamily are linked to several genetic diseases. Mutations in the human DCX gene result in abnormal neuronal migration, epilepsy, and mental retardation; mutations in RP1 are associated with a form of inherited blindness, and DCDC2 has been associated with dyslectic reading disabilities. RESULTS: The DCX-repeat gene family is composed of eleven paralogs in human and in mouse. Its evolution was followed across vertebrates, invertebrates, and was traced to unicellular organisms, thus enabling following evolutionary additions and losses of genes or domains. The N-terminal and C-terminal DCX domains have undergone sub-specialization and divergence. Developmental in situ hybridization data for nine genes was generated. In addition, a novel co-expression analysis for most human and mouse DCX superfamily-genes was performed using high-throughput expression data extracted from Unigene. We performed an in-depth study of a complete gene superfamily using several complimentary methods. CONCLUSION: This study reveals the existence and conservation of multiple members of the DCX superfamily in different species. Sequence analysis combined with expression analysis is likely to be a useful tool to predict correlations between human disease and mouse models. The sub-specialization of some members due to restricted expression patterns and sequence divergence may explain the successful addition of genes to this family throughout evolution.

Animals↗

The tabletting machine as an analytical instrument: qualification of the tabletting machine and the instrumentation with respect to the determination of punch separation and validation of the calibration procedures.

The quality of the determination of punch separation in an eccentric tabletting machine equipped with two inductive displacement transducers was carefully investigated, since this tabletting machine is used as an 'analytical instrument' for the evaluation of the compression behaviour of pharmaceutical materials. For a quasistatic calibration procedure using gauge blocks, the repeatability under standard conditions and the robustness against variations in machine settings, installation conditions, equipment and methods were examined. The readings during calibration can be easily influenced by machine parameters as a result of deficiencies in the construction of the machine and in the mode of instrumentation. The poor plane-parallelism of the punch faces has a further negative effect on the accuracy of punch separation. In addition, the response at loading to lower and higher forces as during calibration was investigated. While at loading up to 100 N, the response of the system to the gauge blocks is systematically influenced by punch separation, for slow manually applied punch-to-punch loading up to 16.5 kN at a broad range of penetration depths, no significant effects were observed in the region of interest for tabletting. To get an indication of the transferability of the calibration and the determination of punch deformation to normal operating conditions, the lateral tilting of the punches during dynamic idle runs, punch-to-punch loading, and compression of microcrystalline cellulose was analyzed. A transfer of the response derived from punch-to-punch compression to tabletting conditions seems to be possible, although this must be questioned on grounds of theoretical considerations. From all the experiments performed, a total error of about +/- 30 microns must be assessed for the determination of punch separation.

Calibration↗

A contextual activity score (CAS) for inferring ADAR-associated transcriptional activity across RNA-seq, single-cell, and spatial transcriptomics.

BACKGROUND AND OBJECTIVE: Adenosine-to-inosine RNA editing, catalyzed by Adenosine Deaminases Acting on RNA (ADARs), is a widespread modification involved in neural function, immune regulation, and cancer. The Alu Editing Index (AEI) is the standard metric to estimate ADAR activity but requires raw sequencing reads and is poorly suited for single-cell and spatial transcriptomic data. This study aimed to develop an alternative framework for inferring ADAR-associated transcriptional activity from gene expression data across diverse transcriptomic technologies. METHODS: We developed the Contextual Activity Score (CAS), a framework based on transcriptional signatures from ADAR perturbation experiments. Context-specific signatures were generated for human neurons, mouse neurons, and cancer models to infer ADAR1 and ADAR2 activity. CAS was computed from normalized gene expression matrices using regulon-based enrichment analysis. Performance was evaluated by comparing with the Alu Editing Index across bulk RNA sequencing datasets, simulated sequencing depths, and library preparation protocols. RESULTS: CAS showed strong concordance with the Alu Editing Index across multiple datasets, while remaining robust to reduced sequencing depth and different library protocols. Unlike the Alu Editing Index, CAS can be applied to single-cell and spatial transcriptomic data and enables the independent assessment of ADAR2 activity. In cancer and neuronal contexts, CAS captured biologically meaningful variations in ADAR-associated transcriptional activity at sample, cell-type, and spatial levels. CONCLUSION: CAS provides a scalable approach applicable across multiple RNA-seq protocols for estimating ADAR-associated transcriptional activity using gene expression data. This method, implemented in an open-source R package for broad adoption, expands the ability to study ADAR-associated transcriptional activity across transcriptomic modalities where direct editing quantification is challenging, such as single-cell and spatial transcriptomics.

Adenosine Deaminase↗

A preliminary study of the feasibility of wound telecare for the elderly.

We have developed a method for remote wound assessment in the elderly. Wound images were taken with a digital camera at a resolution of 640x480 pixels. JPEG compression was then used to produce images of about 100 kByte. Selected clinical data were transmitted by email, together with standardized digital images of wounds. The remote physician then read the clinical data and viewed the digital images on a 38 cm colour display monitor, at a resolution of 800x600 pixels, in 16-bit colour, using standard software. Three elderly inpatients with pressure sores or leg ulcers had both bedside and remote examinations, by different physicians. The diagnosis and therapeutic recommendations proposed after each of the two examinations were compared qualitatively. There was reasonable agreement between the two physicians in the assessment of wound size, anatomical classification, wound bed and status of infection. However, the lack of palpation represented a major limitation to remote wound assessment, despite the use of probes to delineate the depth of any opening in the wound bed.

Aged↗

Temporal envelope perception in dyslexic children.

Speech intelligibility depends heavily on the accurate perception of auditory temporal envelope cues, that is the slower amplitude modulations present in the speech waveform. In a previous study, McAnally and Stein demonstrated that dyslexics may show impaired audibility (i.e. detectability) of these envelope cues. In the present psychophysical study, the ability to process temporal envelope cues was further investigated in dyslexic children by measuring detection thresholds of sinusoidal amplitude-modulation (SAM) and discrimination thresholds of SAM depth and SAM rate. Each threshold was measured at slow and fast SAM rates of 4 and 128 Hz, respectively. Overall, SAM thresholds were higher in dyslexics than in controls at both rates. The strongest deficit was observed at 4 Hz in the SAM detection task, but a deficit was also apparent at 128 Hz in the SAM discrimination tasks. Therefore, these results reveal that, in addition to reduced audibility of slow and fast envelope cues, some dyslexic children show poor encoding fidelity for these cues (as measured by the discrimination tasks). Overall, these findings are consistent with Tallal's hypothesis according to which the speech and reading deficits in some dyslexics may be caused by impaired temporal processes.

Acoustic Stimulation↗

Prediction of the effective postoperative (intraocular lens) anterior chamber depth.

PURPOSE: To investigate methods to predict the effective postoperative anterior chamber depth (ACD) based on a large patient sample. SETTING: University Eye Clinic, Aarhus Kommunehospital, Aarhus, Denmark. METHODS: Based on 6698 consecutive cataract operations with recorded postoperative refractive results, the postoperative effective ACD was calculated in each case and studied by multiple linear regression for covariance with a number of preoperatively defined variables including the axial length by ultrasonography, preoperative ACD, lens thickness, corneal radius by keratometry, subjective refraction, patient age, and corneal white-to-white diameter, the latter of which was available in a subgroup of 900 cases. RESULTS: The postoperative effective ACD was significantly correlated with 6 preoperative variables (in decreasing order): axial length, preoperative ACD, keratometry reading, lens thickness, refraction, and patient age (R = 0.49, P < .000001). Age showed the weakest correlation (P = .02) and could be omitted with no significant decrease in the total correlation coefficient. Using the 5 most significant variables, the ACD could be predicted according to a regression formula with an accuracy of 82.1% of the predictions within 0.5 mm. When this ACD algorithm was used in retrospect in the intraocular lens (IOL) power calculation, the refractive prediction error decreased by 10% from the error associated with a previously published 4-variable algorithm and decreased 28% from the error using no individual ACD method other than the average ACD (P < .00001). CONCLUSIONS: The postoperative ACD was significantly correlated with and hence predictable by a 5-variable regression method incorporating the preoperative axial length, ACD, keratometry reading, lens thickness, and refraction as the most significant variables. The statistical relationship can be used to create a new ACD prediction algorithm to incorporate in a modern "thick lens" IOL power calculation formula with significant improvement in the accuracy of the refractive predictions as a result.

Adult↗

Myopia and night lighting in children in Singapore.

AIM: To examine the role of night time lighting and myopia in children in Singapore METHODS: A cross sectional study was conducted on 1001 children in two Singapore schools. Cycloplegic refraction and A-scan biometry measurements were made in both eyes. A detailed questionnaire was completed by the parents to obtain information on night time lighting, near work activity, educational and demographic factors. RESULTS: There was no difference in myopia prevalence rates in children exposed to night time light (33.1%) compared with children who slept in the dark (31.4%) before age 2. In addition, vitreous chamber depth was not related to night light (p = 0.58) before age 2. These results remained even after controlling for near work. CONCLUSION: Myopia is not associated with night light in Asian populations.

Anterior Chamber↗