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Modification of cyclic nucleotide-gated ion channels by ultraviolet light.

We irradiated cyclic nucleotide-gated ion channels in situ with ultraviolet light to probe the role of aromatic residues in ion channel function. UV light reduced the current through excised membrane patches from Xenopus oocytes expressing the alpha subunit of bovine retinal cyclic nucleotide-gated channels irreversibly, a result consistent with permanent covalent modification of channel amino acids by UV light. The magnitude of the current reduction depended only on the total photon dose delivered to the patches, and not on the intensity of the exciting light, indicating that the functionally important photochemical modification(s) occurred from an excited state reached by a one-photon absorption process. The wavelength dependence of the channels' UV light sensitivity (the action spectrum) was quantitatively consistent with the absorption spectrum of tryptophan, with a small component at long wavelengths, possibly due to cystine absorption. This spectral analysis suggests that UV light reduced the currents at most wavelengths studied by modifying one or more "target" tryptophans in the channels. Comparison of the channels' action spectrum to the absorption spectrum of tryptophan in various solvents suggests that the UV light targets are in a water-like chemical environment. Experiments on mutant channels indicated that the UV light sensitivity of wild-type channels was not conferred exclusively by any one of the 10 tryptophan residues in a subunit. The similarity in the dose dependences of channel current reduction and tryptophan photolysis in solution suggests that photochemical modification of a small number of tryptophan targets in the channels is sufficient to decrease the currents.

Animals↗

The effect of advanced oxidation processes on leachate biodegradation in recycling lysimeters.

Landfill processes were simulated in laboratory-scale bioreactors--lysimeters. The changes in leachate characteristics as well as the influence of advanced oxidation processes (AOPs) on the processes taking place in the sanitary landfill were investigated. Lysimeters were filled with material simulating municipal waste in the city of Lodz, Poland. Compost in the amount of 30% w/w and the methanogens inoculum were added in order to enhance development of a methanogenic phase. The leachate produced in lysimeters was recirculated. In order to investigate the influence of AOPs implementation on processes taking place in landfills two runs in lysimeters were performed, each lasting about 250 days. The leachate composition and biogas composition and production changes showed trends that confirmed that the bench-scale lysimeters appeared suitable to simulate processes taking place in the landfill. The application of AOPs to the leachate recirculated into the lysimeters did not bring about unequivocally positive effects. The ozonation of the leachate, implemented at the beginning of the methanogenic phase, caused slight acceleration (about 2 weeks) of the biodegradation, whereas employment of H2O2/UV led to the inhibition of anaerobic processes.

Biodegradation, Environmental↗

10,20-Methanorhodopsins: (7E,9E,13E)-10,20-methanorhodopsin and (7E,9Z,13Z)-10,20-methanorhodopsin. 11-cis-locked rhodopsin analog pigments with unusual thermal and photo-stability.

Synthesis of the retinal analog, 10,20-methanoretinal (R6), where the 11Z conformation is locked in a six-membered ring, yielded four stereoisomers (7E,9E,13E, 7E,9E,13Z, 7E,9Z,13E and 7E,9Z,13Z). These four isomers were separated by straight-phase isocratic HPLC and identified by 1H-NMR and NOE analysis. All isomers smoothly recombined with bovine opsin at a relatively high rate (5-10% of that of the natural chromophore 11Z-retinal). The corresponding 13E and 13Z isomers yielded identical analog pigments, probably due to rapid thermal isomerization around the C13 = C14 double bond. The (7E,9E)-isomers produced a pigment with maximal absorbance at 510 nm, while the pigment produced from the (7E,9Z)-isomers had maximal absorbance at 494 nm. Based upon kinetic considerations, the chromophore structure in the 510-nm-absorbing pigment should be (7E,9E,13E), i.e. equivalent to 11Z-retinal and rhodopsin, while the chromophore structure in the 494-nm-absorbing pigment should be (7E,9Z,13Z), i.e. equivalent to (9Z,11Z,13Z)-rhodopsin, an isorhodopsin analog. In analogy to the 11-cis-locked rhodopsin analogs Rh5 and Rh7, the 510-nm-absorbing pigment, (7E,9E,13E)-10,20-methanorhodopsin, was dubbed Rh6 and the 494-nm-absorbing pigment. (7E,9Z,13Z)-10,20-methanorhodopsin, was dubbed Iso6. The opsin shift of Rh6 (2660 cm-1) is practically identical to that of rhodopsin itself (2650 cm-1). Rh6 and Iso6 are nearly as stable as rhodopsin towards hydroxylamine and solubilization in detergent solution and could be easily purified and reconstituted into proteoliposomes by established procedures. Due to the 11-cis-lock, Rh6 is much less photolabile (bleaching rate less than 1%) than rhodopsin, but it is not completely photostable, probably since photoisomerization around the C7 = C8, C9 = C10 and C13 = C14 bonds is allowed. Illumination of either Rh6 or Iso6 does not generate the common photointermediates but instead produces a complex pattern of photochemical transitions, which during continuous illumination leads to the same final steady state, absorbing at 498 nm. This process is accompanied by a slow but steady loss of pigment, probably due to hydrolytic release of chromophore, which is markedly accelerated in the presence of hydroxylamine. In a physiological assay (light-dependent activation of rod cGMP phosphodiesterase) Rh6 is only marginally active and this probably reflects conformational changes accompanying the above-mentioned photochemical transitions. This supports the concept that normal rhodopsin-based phototransduction requires 11Z to all-E isomerization.(ABSTRACT TRUNCATED AT 400 WORDS)

Animals↗

Behavior of the polycyclic musks HHCB and AHTN in lakes, two potential anthropogenic markers for domestic wastewater in surface waters.

The synthetic polycyclic musks HHCB and AHTN are potential chemical markers for domestic wastewater contamination of surface waters. Understanding their environmental behavior is important to evaluate their suitability as markers. This study focuses on the quantification of the processes that lead to an elimination in lakes. Rate constants for all relevant processes were estimated based on laboratory studies and models previously described. In lake Zurich, during winter time, both compounds are eliminated primarily by outflowing water and due to losses to the atmosphere. In summer, direct photolysis represents the predominant elimination process for AHTN in the epilimnion of lake Zurich (quantum yield, 0.12), whereas for HHCB, photochemical degradation is still negligible. HHCB and AHTN were then measured in effluents of Swiss wastewater treatment plants (WWTPs), in remote and anthropogenically influenced Swiss surface waters, and in Mediterranean seawater using an analytical procedure based on SPE and GC-MS-SIM with D6-HHCB as internal standard (LODs for natural waters, 2 and 1 ng/L, respectively). In winter, concentrations of HHCB and AHTN in lakes (<2-47 and <1-18 ng/L, respectively) correlated with the anthropogenic burden by domestic wastewater (ratio population per water throughflow), demonstrating the suitability of these compounds as quantitative, source-specific markers. In summer, however, no such correlations were observed. Vertical concentration profiles in lake Zurich indicated significant losses in the epilimnion during summer, mainly for AHTN, and could be rationalized with a lake modeling program (MASASlight), considering measured, average loads from WWTP effluents (0.80 +/- 0.22 and 0.32 +/- 0.11 mg person(-1) d(-1) for HHCB and AHTN, respectively) and the estimated rate constants for elimination processes.

Benzopyrans↗

Characterization of the transient intermediates generated from the photoexcitation of nabumetone: a comparison with naproxen.

The photochemical and photophysical properties of nabumetone (4-[6-methoxy-2-naphthyl]-2-butanone) were examined employing conventional and time-resolved spectroscopic techniques. The naphthalene-like nabumetone triplet is formed with 29% efficiency in acetonitrile. Singlet oxygen formation was also detected in this solvent with a phi delta value of 0.19. A naphthalene-like radical cation absorption, formed via biphotonic processes, was also detected. The reactivity of both the triplet and radical cation of nabumetone toward different substrates was examined. The photochemical properties of nabumetone are compared with those of naproxen, a structurally related acidic nonsteroidal anti-inflammatory drug. For these two anti-inflammatory agents, a type II photosensitization process is most likely responsible for their phototoxicity.

Anti-Inflammatory Agents, Non-Steroidal↗

Study of a reaction between 2,3-dichloro-1,4-naphthoquinone and N,N'-diphenyl thiourea involving an EDA adduct as intermediate.

The reaction between 2,3-dichloro-1,4-naphthoquinone and N,N'-diphenyl thiourea in acetonitrile medium, which yields the product, 2,3-(N,N'-diphenylthioureylene)-naphtho-1,4-quinone has been found to take place in two ways--thermal and photochemical. The thermal (dark) reaction occurs through an electron donor-acceptor (EDA) adduct as intermediate with evolution of HCl and kinetic data fit into the scheme A + B<==>AB(fast)-->product(slow) Formation constant of the EDA adduct and the rate constant of the slow process have been determined at four different temperatures from which the enthalpy of formation of AB has been determined. The photochemical reaction has been studied with 360 nm ordinary light and also with 365 and 370 nm laser beams. Use of laser causes about 10(3)-fold increase in the rate of the reaction but does not affect the quantum yield. The final product has been isolated and characterised by elemental analysis, 1H and 13C NMR, IR spectroscopy and mass spectrometry.

Electron Transport↗

UV light assisted decolorization of dark brown colored coffee effluent by photo-Fenton reaction.

The photochemical decolorization of coffee effluent has been examined by photo-Fenton (UV/Fe2+/H2O2) process. Effects of UV light intensity, initial coffee concentration, iron dose and H2O2 dose on the color removal of model coffee effluent have been investigated. The rate of decolorization increased with decreasing initial coffee effluent concentration. It was found that the Fe ion dose and UV light intensity enhanced the decolorization rate. The decolorization process of coffee effluent could be divided into three established phases. At the beginning of the photo-Fenton process, the instantaneous and significant increase in color of the solution was found (Phase-I). In the subsequent phase (Phase-II), the decolorization rate was initially fast and subsequently decreased. In Phase-III, the rate was accelerated and then the complete decolorization of model coffee effluent was achieved. In order to elucidate the mechanisms of coffee effluent color removal process, the concentration changes in Fe3+ and Fe2+ besides H2O2 were measured during the course of the photo-Fenton process. The rate-determining step in Phase-II was the photo-Fenton reaction or photoreduction of Fe3+. On the other hand, the decolorization process in Phase-III was highly affected by Fenton reaction or decomposition of H2O2 with Fe2+. About 93% mineralization of 250 mg L(-1) model coffee effluent was achieved after 250 min. A comparative study for TiO2, ZnO and photo-Fenton oxidation processes has been also carried out and the photo-Fenton process was found to be the most effective for color removal of coffee effluent.

Coffee↗

Cytochrome c folding triggered by electron transfer.

BACKGROUND: Experimental and theoretical studies of protein folding suggest that the free-energy change associated with the folding process is a primary factor in determining folding rates. We have recently developed a photochemical electron-transfer-triggering method to study protein-folding kinetics over a wide range of folding free energies. Here, we have used this technique to investigate the relationship between folding rate and free-energy change using cytochromes c from horse (h-cyt c) and yeast (y-cyt c), which have similar backbone folds but different amino-acid sequences and, consequently, distinct folding energies. RESULTS: The folding free energies for oxidized and reduced h-cyt c and y-cyt c are linear functions of the denaturant (guanidine hydrochloride) concentration, but the concentration required to unfold half of the protein is 1.5 M lower for y-cyt c. We measured the folding rates of reduced h-cyt c and y-cyt c over a range of guanidine hydrochloride concentrations at two temperatures. When driving forces are matched at the appropriate denaturant concentrations, the two homologs have comparable folding rates. The activation free energies for folding h-cyt c and y-cyt c are linearly dependent on the folding free energies. The slopes of these lines are similar (approximately 0.4) for the two proteins, suggesting an early transition state along the folding reaction coordinate. CONCLUSIONS: The free-energy relationships found for h-cyt c and y-cyt c folding kinetics imply that the height of the barrier to folding depends upon the relative stabilities of the unfolded and folded states. The striking correspondence in rate/free-energy profiles for h-cyt c and y-cyt c suggests that, despite low sequence homology, they follow similar folding pathways.

Animals↗

Photolysis of (Diamine)bis(2,2'-bipyridine)ruthenium(II) Complexes Using On-Line Electrospray Mass Spectrometry.

Photolysis of Ru(bpy)(2)(en)(2+) and Ru(bpy)(2)(tn)(2+), where bpy = 2,2'-bipyridine, en = ethylenediamine, and tn = 1,3-propylenediamine, was studied in acetonitrile using on-line electrospray mass spectrometry (ES-MS). These complexes are known to undergo a four-electron oxidation photochemically, giving the alpha,alpha'-diimine complexes. The monoimine complexes involved in this stepwise process were detectable after photoirradiation (lambda >420 nm). Also, new ligand-oxidized complexes Ru(bpy)(2)(en+14)(2+) and Ru(bpy)(2)(tn+14)(2+) were observed together with photosubstitution products such as Ru(bpy)(2)(AN)(2)(2+) and Ru(bpy)(2)(AN)(2)X(+) (AN = acetonitrile). The notation (en+14) and (tn+14) represents loss of two hydrogen atoms and addition of an oxygen atom to the en and tn ligands. Photosubstitution intermediates with the monodentate diamine, Ru(bpy)(2)(tn)(AN)(2+) and Ru(bpy)(2)(tn)(AN)X(+), were detected in the ES mass spectrum of the tn complex but not in that of the en complex. Other photosubstituted intermediates with the monodentate (en+14) and (tn+14) ligands were detected by on-line mass analysis. The electrospray technique combined with use of a flow-through photoreaction cell was shown to be a useful tool for studying photolysis of inorganic metal complexes.

Journal Article↗

Solid-state 2H NMR structure of retinal in metarhodopsin I.

The structural and photochemical changes in rhodopsin due to absorption of light are crucial for understanding the process of visual signaling. We investigated the structure of trans-retinal in the metarhodopsin I photointermediate (MI), where the retinylidene cofactor functions as an antagonist. Rhodopsin was regenerated using retinal that was (2)H-labeled at the C5, C9, or C13 methyl groups and was reconstituted with 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine. Membranes were aligned by isopotential centrifugation, and rhodopsin in the supported bilayers was then bleached and cryotrapped in the MI state. Solid-state (2)H NMR spectra of oriented rhodopsin in the low-temperature lipid gel state were analyzed in terms of a static uniaxial distribution (Nevzorov, A. A.; Moltke, S.; Heyn, M. P.; Brown, M. F. J. Am. Chem. Soc. 1999, 121, 7636-7643). The line shape analysis allowed us to obtain the methyl bond orientations relative to the membrane normal in the presence of substantial alignment disorder (mosaic spread). Relative orientations of the methyl groups were used to calculate effective torsional angles between the three different planes that represent the polyene chain and the beta-ionone ring of retinal. Assuming a three-plane model, a less distorted structure was found for retinal in MI compared to the dark state. Our results are pertinent to how photonic energy is channeled within the protein to allow the strained retinal conformation to relax, thereby forming the activated state of the receptor.

Nuclear Magnetic Resonance, Biomolecular↗

Excitation transfer between photosynthetic units: the 1964 experiment.

We review here the background and the experiments that led to the concept of excitation energy transfer among photosystem (PS) II units. On the basis of a kinetic analysis of oxygen evolution and chlorophyll a fluorescence yield, the authors showed, in 1964, that the PS II photochemical reaction involved in the formation of oxygen is not a first-order process. We concluded that excitation energy localized in a 'photosynthetic unit' including a reduced primary acceptor is transferred with a high probability to neighboring PS II units. Here, the beginnings and the original data of this topic are presented.

Journal Article↗

Energy uptake in the first step of visual excitation.

Perception of light by the retina starts with the absorption of a photon by 11-cis retinal, which is covalently incorporated into the membrane-bound protein, rhodopsin. The initial result of photon capture is the very rapid formation of a red-shifted species, bathorhodopsin (also known as prelumirhodopsin), which is (meta-)stable at liquid nitrogen temperature but which decomposes at higher temperatures, in the dark, through a series of intermediate stages, resulting in the release of all-trans retinal from the apoprotein, opsin. Bathorhodopsin formation is the only photochemical step in the overall reaction and, therefore, merits investigation. Several models for the process have been proposed, and have been critically reviewed, although no consensus yet exists as to the nature or mechanism of formation of the batho intermediate. I report here on the first direct measurement of photon energy uptake during bathorhodopsin formation from bovine rhodopsin, and on its possible significance.

Animals↗

Picosecond-nanosecond laser photolysis studies of a photoacid generator in solutions: Transient absorption spectroscopy and transient grating measurements.

Photochemical reaction profiles of a photoacid generator, N-trifluoromethylsulfonyloxy-1,8-naphthalimide (NI-Sf), in solution phase were investigated by means of picosecond and nanosecond transient absorption spectroscopy as well as transient grating measurements. Picosecond transient absorption spectroscopy directly revealed that the lifetime of the S1 state and the intersystem-crossing yield decreased with increasing solvent polarity. On the other hand, photochemical reaction yield increased with an increase in the solvent polarity. These results indicated that the photochemical reaction started in the S1 state. Transient grating measurement directly detected the diffusion process of the proton and its diffusion coefficient was obtained to be 3.9 x 10(-9) m2 s(-1), which was several times larger than those of the usual solute molecules.

Acids↗

Generation by visible light of labile free radicals in the melanin granules of the eye.

The melanin granules of the eye generate a free radical when irradiated with visible light under approximately physiological conditions. The rapid generation in light and decay in dark of the free radical as indicated by electron spin resonance studies, coupled with the anatomical proximity of the melanin granules to the rods and cones of the eye, suggest that these granules may play an important role in the visual process. The investigation of this free radical offers a possible approach to connect the photochemical events in the eye with the subsequent electrophysiological events in the nerve.

Electron Spin Resonance Spectroscopy↗

Determination of Peptide oligomerization state using rapid photochemical crosslinking.

The assembly of the amyloid beta-protein (Abeta) into neurotoxic oligomers and fibrils is a seminal pathogenic process in Alzheimer's disease (AD). Understanding the mechanisms of Abeta assembly could prove useful in the identification of therapeutic targets. Owing to the metastable nature of Abeta oligomers, it is difficult to obtain interpretable data through application of classical methods, such as electrophoresis, chromatography, fluorescence, and light scattering. Here, we apply the method Photo-Induced Crosslinking of Unmodified Proteins (PICUP) to the study of Abeta oligomerization. This method directly produces covalent bonds among unmodified polypeptide chains through in situ generation of peptide free radicals. PICUP provides a snapshot of the native oligomerization state of proteins and can be used for assembly state analysis of a wide variety of peptides and proteins.

Amyloid beta-Peptides↗

Natural attenuation of pharmaceuticals and alkylphenol polyethoxylate metabolites during river transport: photochemical and biological transformation.

The capacity of rivers to naturally attenuate trace organic compounds is an important but poorly understood process because the many factors that control attenuation are interrelated and difficult to study in isolation. To better understand the relative importance of chemical (photolysis and sorption) and biological attenuation processes, contaminant removal along a 12-km stretch of the Santa Ana River (SAR) was determined as a function of travel time, distance, and irradiance. Target contaminants included three pharmaceuticals (gemfibrozil, ibuprofen, and naproxen) and their metabolites, and the metabolites of alkylphenol polyethoxylates (APEMs). The APEMs included alkylphenols (APs), short-chain alkylphenol polyethoxylates (APEOs), alkylphenol polyethoxycarboxylates (APECs), and carboxyalkylphenol polyethoxycarboxylates (CAPECs). Overall removals ranged from 50% for APs to 100% for naproxen and increased with distance and time, in many cases following first-order kinetics. For naproxen, which is photolabile, average removals were 20 to 30% more during the day than at night; the nighttime and daytime half-lives were 3 h and 1.7 to 1.9 h, respectively. Comparison of field and laboratory data suggests that approximately 40% of the daytime naproxen removal can be attributed to photolysis with the remainder due to other processes, most likely sorption. For ibuprofen and gemfibrozil, half-lives were 5.4 and 2.7 h, respectively, and laboratory data suggest that biotransformation is the principal attenuating process. The APEM attenuation might be due to sorption and biotransformation; phototransformation may also play a minor role. These data demonstrate that travel times on the order of hours can significantly mitigate the impact of effluent discharge on the water quality of shallow rivers.

Biotransformation↗

Toxicology of selected nitric oxide-donating xenobiotics, with particular reference to azide.

Nitric oxide (NO) has been discovered recently to be a ubiquitous, endogenous mediator, which is responsible for a variety of normal physiological functions. However, NO also has been implicated in several pathophysiological processes. For example, the pulmonary toxicity of various nitrogen oxides, including NO, found in photochemical smog has been studied for decades; endogenous NO also is associated with bleomycin-induced lung damage, as well as other adverse effects. Recently, a variety of xenobiotics have been shown to owe their biological activity in vivo to their biotransformation to NO. Thus, the therapeutic vasodilatation produced by drugs such as nitroglycerin and sodium nitroprusside is now believed to result from their release of NO, which then mimics the effects of endogenously synthesized NO. The toxic effects of NO prodrugs are, therefore, a matter of concern, especially the extent to which, if any, NO contributes to their toxicity. As reviewed here, NO does not appear to contribute importantly to the toxicity of the NO donors nitrite, hydroxylamine, or nitroprusside. However, it is by no means clear whether or not the NO generated in vivo from sodium azide contributes in a major way to its toxicity. Azide is almost as acutely toxic as cyanide, with which it shares a number of biological effects; yet, azide also has certain cardiovascular actions in common with nitrite. Unlike either cyanide or nitrite, some evidence suggests a tendency for azide to produce low-grade cumulative toxicity. In laboratory animals, azide frequently produces nonasphyxial convulsions, whereas most human deaths appear to be the result of cardiovascular collapse. Neither of these azide-induced syndromes appears to be due to the inhibition of cytochrome c oxidase. Azide is widely used as a preservative in aqueous laboratory reagents and as the propellant in automobile air bags and aircraft escape chutes. Both of these inflable systems are generally safe, and will prevent untold numbers of injuries and deaths. However, to protect workers who handle these devices and others who may come into contact with the sodium azide propellant in these systems, our rudimentary knowledge of azide toxicity needs to be expanded.

Animals↗

Study of the photochemical and in vitro phototoxicity of chlortalidone [2-chloro-5-(1-hydroxy-3-oxo-1-isoindolinyl)benzene sulfonamide].

The photodegradation process of the phototoxic diuretic drug chlorthalidone was studied. The products of its photolysis under UV-B were isolated and identified. Chlorthalidone was found to be active when examined by photohemolysis on human erythrocytes, but not in the presence of the isolated photoproducts. Inhibition of the photohemolysis process induced by chlorthalidone on addition of reduced glutathione (GSH) or ascorbic acid suggests the involvement of radicals species. The inhibition with 1,4-diazabycyclo [2.2.2] octane (DABCO), sodium azide (NaN3) sowie 2,5-dimethylfuran proof the participation of singlet oxygen (1O2) in this process.

Chlorthalidone↗