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PubMed2002

Trans-hydrogen-bond (h2)J(NN) and (h1)J(NH) couplings in the DNA A-T base pair: natural bond orbital analysis.

Natural bond orbital (NBO) analysis described here demonstrates that trans-hydrogen-bond (trans-H-bond) NMR J couplings in the DNA A-T base pair, h2JNN and h1JNH, are determined largely by three terms: two Lewis-type contributions (the single-orbital contribution from the adenine lone pair and the contribution from the sigmaN3H3 natural bond orbital of the thymine ring) and one contribution from pairwise delocalization of spin density (between the lone pair in adenine and the sigma* antibonding orbital linking N3 and H3 of thymine). For h2JNN coupling, all three contributions are positive, whereas for h1JNH coupling, the delocalization term is negative, and the other two terms are positive, resulting in a small net positive coupling constant. This result rationalizes the experimental findings that the two-bond coupling (h2JNN approximately 9 Hz) is larger than the one-bond coupling (h1JNH approximately 3 Hz) and demonstrates that the same hyperconjugative and steric mechanisms that stabilize the H-bond are involved in the transmission of J coupling information. The N1...H3-N3 H-bond of the DNA A-T base pair is found to exhibit significant covalent character, but steric effects contribute almost equally to the trans-H-bond coupling.

Adenine↗

PubMed2004

One-bond spin-spin coupling constants of X-1H proton donors in complexes with X-H-Y hydrogen bonds, for X = 13C, 15N, 17O, and 19F: predictions, comparisons, and relationships among 1J X-H, 1K X-H, and X-H distances.

Ab initio calculations at the equation-of-motion coupled cluster (EOM-CCSD) level of theory have been carried out to investigate one-bond (13)C-(1)H, (15)N-(1)H, (17)O-(1)H, and (19)F-(1)H coupling constants in a systematic study of monomers and hydrogen-bonded complexes. Computed coupling constants ((1)J(X-H)) for monomers are in good agreement with available experimental data. All reduced Fermi-contact terms and reduced coupling constants ((1)K(X-H)) for monomers and complexes are positive. Plots of (1)K(X-H) versus the X-H distance for the 16 monomers and the 64 complexes in which these monomers are proton donors exhibit significant scatter. However, a linear relationship has been demonstrated for the first time between coupling constants and X-H distances for different X atoms by plotting the ratios of the coupling constants for complexes and corresponding monomers versus the ratios of distances for complexes and corresponding monomers times the square of the Pauling electronegativity. Since the ratio removes the dependence of coupling constants on the magnetogyric ratios of X, this relationship holds for both (1)K(X-H) and (1)J(X-H). The decrease in reduced coupling constants ((1)K(X-H)) as the X-H distance increases is due primarily to the increased proton-shared character of the hydrogen bond.

Journal Article↗

PubMed2006

Exchange coupling mediated through-bonds and through-space in conformationally constrained polyradical scaffolds: calix[4]arene nitroxide tetraradicals and diradical.

Calix[4]arenes constrained to the 1,3-alternate conformation and functionalized at the upper rim with four and two tert-butylnitroxides have been synthesized and characterized by X-ray crystallography, magnetic resonance (EPR and (1)H NMR) spectroscopy, and magnetic studies. The 1,3-alternate nitroxide tetraradical and diradical provide unique polyradical scaffolds for dissection of the through-bond and through-space intramolecular exchange couplings. In addition, detailed magnetic studies of the previously reported calix[4]arene nitroxide tetraradical, which possesses cone conformation in solution, reveal conformational dependence of exchange coupling. Through-bond coupling between the adjacent nitroxide radicals is mediated by the nitroxide-m-phenylene-CH(2)-m-phenylene-nitroxide coupling pathway, and through-space coupling is found between the diagonal nitroxide radicals at the conformationally constrained N...N distance of 5-6 A. Magnetic studies of the calix[4]arene polyradical scaffolds in frozen solutions show that the through-bond exchange coupling in the 1,3-alternate calix[4]arene tetraradical is antiferromagnetic, while that in cone calix[4]arene tetraradical is ferromagnetic. The through-space exchange couplings are antiferromagnetic in both cone and 1,3-alternate calix[4]arene tetraradical, as well as in the 1,3-alternate calix[4]arene diradical. The exchange coupling constants (|J/k|) are of the order of 1 K.

Calixarenes↗

PubMed2006

Enantioselective reductive coupling of 1,3-enynes to heterocyclic aromatic aldehydes and ketones via rhodium-catalyzed asymmetric hydrogenation: mechanistic insight into the role of Brønsted acid additives.

Hydrogenation of 1,3-enynes 1a-e in the presence of heterocyclic aromatic aldehydes and ketones using chirally modified cationic rhodium precatalysts results in reductive coupling to afford dienylated alpha-hydroxy heteroarenes 2-23 with exceptional levels of regio- and enantiocontrol. Coupling of enyne 1a to 2-pyridinecarboxaldehyde using an achiral rhodium catalyst in the presence of a chiral Akiyama-Terada-type phosphoric acid derived from BINOL as the Brønsted acid co-catalyst provides the coupling product 2 with substantial levels of optical enrichment (82% ee). This result suggests that substrate protonation and/or formation of a strong hydrogen bond occurs in advance of the stereogenic C-C bond forming event. Further, the high levels of asymmetric induction demonstrate that interaction of the aldehyde with the Brønsted acid activates the system toward C-C coupling. Reductive coupling of enyne 1a and 2-pyridinecarboxaldehyde under an atmosphere of elemental deuterium provides the monodeuterated product deuterio-2, consistent with a catalytic mechanism involving alkyne-carbonyl oxidative coupling followed by hydrogenolytic cleavage of the resulting oxametallacycle. The diene side chain of the coupling products is subject to diverse selective transformations, as demonstrated by the conversion of coupling products 2 and 8 to compounds 24-26 and 27-29, respectively.

Acids↗

PubMed2001

Unusual head-to-tail coupling of alkyl benzoates by electroreduction.

The electroreduction of alkyl benzoates in an alcoholic solvent gave unusual head-to-tail coupled products. Usual head-to-head coupled products derived from acyloin condensation could not be detected. The best result (73% yield) was obtained from methyl benzoate using an undivided cell with an Sn cathode in i-PrOH containing tetraalkylammonium salt as a supporting electrolyte. Using an undivided cell, the products cross-coupled with a solvent molecule were obtained as byproducts. The substitution at the para position of methyl benzoate considerably decreased the yields of the head-to-tail coupled products and increased those of the cross-coupled products. The possible mechanism of the head-to-tail coupling is the attack of anion radical, generated from methyl benzoate by one-electron transfer, to another methyl benzoate. The cross-coupled products were formed by the reaction with carbonyl compound anodically produced from a solvent molecule. The cross-coupling between methyl benzoate and aromatic aldehydes was also effected by the mixed electroreduction under the same conditions.

Journal Article↗

PubMed2005

Ab initio characterization of electron transfer coupling in photoinduced systems: generalized Mulliken-Hush with configuration-interaction singles.

To calculate electronic couplings for photoinduced electron transfer (ET) reactions, we propose and test the use of ab initio quantum chemistry calculation for excited states with the generalized Mulliken-Hush (GMH) method. Configuration-interaction singles (CIS) is proposed to model the locally excited (LE) and charge-transfer (CT) states. When the CT state couples with other high lying LE states, affecting coupling values, the image charge approximation (ICA), as a simple solvent model, can lower the energy of the CT state and decouple the undesired high-lying local excitations. We found that coupling strength is weakly dependent on many details of the solvent model, indicating the validity of the Condon approximation. Therefore, a trustworthy value can be obtained via this CIS-GMH scheme, with ICA used as a tool to improve and monitor the quality of the results. Systems we tested included a series of rigid, sigma-linked donor-bridge-acceptor compounds where "through-bond" coupling has been previously investigated, and a pair of molecules where "through-space" coupling was experimentally demonstrated. The calculated results agree well with experimentally inferred values in the coupling magnitudes (for both systems studied) and in the exponential distance dependence (for the through-bond series). Our results indicate that this new scheme can properly account for ET coupling arising from both through-bond and through-space mechanisms.

Algorithms↗

PubMed2005

Characterizing hydrogen bonding and proton transfer in 2:1 FH:NH3 and FH:collidine complexes through one- and two-bond spin-spin coupling constants across hydrogen bonds.

Ab initio equation-of-motion coupled cluster singles and doubles calculations have been carried out on a variety of 2:1 FH:NH(3) complexes (F(b)H(b):F(a)H(a):NH(3)) to investigate the effects of structural changes on one- and two-bond spin-spin coupling constants across F(a)-H(a)-N and F(b)-H(b)-F(a) hydrogen bonds and to provide insight into experimentally measured coupling constants for 2:1 FH:collidine (2:1 FH:2,4,6-trimethylpyridine) complexes. Coupling constants have been computed for 2:1 FH:NH(3) equilibrium structures and proton-transferred perpendicular and open structures at 2:1 FH:NH(3), FH:pyridine, and FH:collidine geometries. (2h)J(Fa)(-)(N), (1)J(Fa)(-)(Ha), and (1h)J(Ha)(-)(N) exhibit expected dependencies on distances, angles, and the nature of the nitrogen base. In contrast, one- and two-bond coupling constants associated with the F(b)-H(b)-F(a) hydrogen bond, particularly (2h)J(F)()b(-)(F)()a, vary significantly depending on the F-F distance, the orientation of the hydrogen-bonded pair, and the nature of the complex (HF dimer versus the anion FHF(-)). The structure of the 2:1 FH:collidine complex proposed on the basis of experimentally measured coupling constants is supported by the computed coupling constants. This study of the structures of open proton-transferred 2:1 FH:NH(3), FH:pyridine, and FH:collidine complexes and the coupling constants computed for 2:1 FH:NH(3) complexes at these geometries provides insight into the role of the solvent in enhancing proton transfer across both N-H(a)-F(a) and F(b)-H(b)-F(a) hydrogen bonds.

Journal Article↗

PubMed2006

Estimation of electronic coupling for intermolecular electron transfer from cross-reaction data.

Sixty-five electron-transfer reactions including 27 new 0, +1 couples have been added to our data set of cross-reactions between 0 and +1 couples, bringing it to 206 reactions involving 72 couples that have been studied by stopped-flow kinetics in acetonitrile containing supporting electrolyte at 25 degrees C, formal potentials determined by cyclic voltammetry, and analyzed using Marcus cross-rate theory. Perhaps surprisingly, a least-squares analysis demonstrates that intrinsic rate constants exist that predict the cross-rate constants to within a factor of 2 of the observed ones for 93% of the reactions studied, and only three of the reactions have a cross-rate constant that lies outside of the factor of 3, that corresponds to a factor of 10 uncertainty in the rate constant for an unknown couple. Many triarylamines, which have very high intrinsic reactivity, are included among the newly studied couples. The enthalpy contribution to the Marcus reorganization energy, lambda'v, has been calculated for 46 of the couples studied, at the (U)B3LYP/6-31+G (or for the larger and lower barrier compounds, at the less time-consuming (U)B3LYP/6-31G) level. In combination with a modified Levich and Dogodnadze treatment that assumes that the rate constant is proportional to (KeHab2/lambda1/2) exp[-DeltaG/RT], this allows estimation of the electronic coupling (Hab) at the transition state for intermolecular electron transfer, (more properly H'ab, the product of the square root of the encounter complex formation constant times Hab) for these couples. Although the principal factor affecting intermolecular electron-transfer rate constants is clearly lambda, H'ab effects are easily detectable, and the dynamic range in our estimates of them is over a factor of 600.

Journal Article↗

PubMed1999

Adenylyl cyclase interaction with the D2 dopamine receptor family; differential coupling to Gi, Gz, and Gs.

1. The D2-type dopamine receptors are thought to inhibit adenylyl cyclase (AC), via coupling to pertussis toxin (PTX)-sensitive G proteins of the Gi family. We examined whether and to what extent the various D2 receptors (D2S, D2L, D3S, D3L, and D4) couple to the PTX-insensitive G protein Gz, to produce inhibition of AC activity. 2. COS-7 cells were transiently transfected with the individual murine dopamine receptors alone, as well as together with the alpha subunit of Gz. PTX treatment was employed to inactivate endogenous alpha i, and coupling to Gi and Gz was estimated by measuring the inhibition of cAMP accumulation induced by quinpirole, in forskolin-stimulated cells. 3. D2S or D2L receptors can couple to the same extent to Gi and to Gz. The D4 dopamine receptor couples preferably to Gz, resulting in about 60% quinpirole-induced inhibition of cAMP accumulation. The D3S and D3L receptor isoforms couple slightly to Gz and result in 15 and 30% inhibition of cAMP accumulation, respectively. 4. We have demonstrated for the first time that the two D3 receptor isoforms, and not any of the other D2 receptor subtypes, also couple to Gs in both COS-7 and CHO transfected cells, in the presence of PTX. 5. Thus, the differential coupling of the D2 dopamine receptor subtypes to various G proteins may add another aspect to the diversity of dopamine receptor function.

Adenylate Cyclase Toxin↗

PubMed2002

MQ-hCN-based pulse sequences for the measurement of 13C1'-1H1', 13C1'-15N, 1H1'-15N, 13C1'-13C2', 1H1'-13C2',13C6/8-1H6/8, 13C6/8-15N, 1H6/8-15N, 13C6-13C5, 1H6-13C5 dipolar couplings in 13C, 15N-labeled DNA (and RNA).

A suite of multiple quantum (MQ) HCN-based pulse sequences has been developed for the purpose of collecting dipolar coupling data in labeled nucleic acids. All the pulse sequences are based on the robust MQ-HCN experiment which has been utilized for assignment purposes in labeled nucleic acids for a number of years and provides much-needed resolution for the dipolar coupling measurements. We have attempted to collect multiple couplings centered on the 13C1' and 13C6/8 positions. Six pulse sequences are described, one each for measurement of one-bond 13C1'-1H1' and 13C6/8-1H6/8 couplings, one for measurement of one-bond 13C1'-15N and two-bond 1H1'-15N couplings, one for measurement of one-bond 13C6/8-15N and two-bond 1H6/8-15N couplings, one for measurement of one-bond 13C1'- 13C2' and two-bond 1H1'-13C2' couplings, and one for measurement of one-bond 13C6-13C5 and two-bond 1H6-13C5 couplings in the bases of C and T. These sequences are demonstrated for a labeled 18 bp DNA duplex in a 47 kDa ternary complex of DNA, CBFbeta, and the CBFalpha Runt domain, thus clearly demonstrating the robustness of the pulse sequences even for a very large complex.

Animals↗

PubMed2002

Angular dependence of 1J(Ni,Calphai) and 2J(Ni,Calpha(i-1)) coupling constants measured in J-modulated HSQCs.

A new method to measure 1J(Ni,Calphai) and 2J(Ni,Calpha(i-1)) coupling constants in proteins based on a J-modulated sensitivity enhanced HSQC was introduced. Coupling constants were measured in the denatured and in the native state of ubiquitin and found to depend on the conformation of the protein backbone. Using a combined data set of experimental coupling constants from ubiquitin and staphylococcal nuclease (Delaglio et al., 1991), the angular dependence of the coupling constants on the backbone angles psi and phi was investigated. It was found that the size of 2J(Ni,Calpha(i-1)) correlates strongly with the backbone conformation, while only a weak conformational dependence on the size of 1J(Ni,Calphai) coupling constants was observed. Coupling constants in the denatured state of ubiquitin were uniform along the sequence of the protein and not dependent on a given residue type. Furthermore it was shown that the observed coupling constants were in good agreement with predicted coupling constants using a simple model for the random coil.

Carbon Isotopes↗

PubMed2003

Measurement of residual dipolar couplings from 1Halpha to 13Calpha and 15N using a simple HNCA-based experiment.

Novel NMR pulse schemes for simultaneous measurement of 1D(C)alpha(H)alpha and 2D(NH)alpha residual dipolar couplings in proteins is presented. We show that 2D(NH)alpha coupling can be very useful for protein structure determination. The 2D(NH)alpha coupling can be measured from 15N dimension with good accuracy on a slowly relaxing TROSY resonance, utilizing HNCA-TROSY-based experiments, which concomitantly supply large 1D(C)alpha(H)alpha coupling. The dynamic range of 2D(NH)alpha coupling is comparable to 1D(NC') coupling, but instead, it also serves non-redundant information on the course of protein backbone, thanks to rotational degree of freedom with respect to peptide bond. The HNCA-TROSY-based experiments are optimal for measuring residual dipolar couplings at high magnetic fields owing to absence of rapid transverse relaxation of carbonyl carbon. The reliability of the proposed approach was tested on 15N/13C human ubiquitin. A very good correlation with ubiquitin solution as well as crystal structure, for both 1D(C)alpha(H)alpha and 2D(NH)alpha couplings, was obtained.

Carbon Isotopes↗

PubMed2005

Infidelity and behavioral couple therapy: optimism in the face of betrayal.

Infidelity is a common issue with which distressed couples and their therapists grapple. However, there are no data on the efficacy of commonly used therapies to treat couples in which there has been an affair. In the present exploratory study, the authors examined the therapy outcomes of a sample of infidelity couples (n=19) who had participated in a randomized clinical trial of marital therapy (N=134). Results show that infidelity couples began treatment more distressed than noninfidelity couples; however, evidence suggests that couples who had an affair and who revealed this affair prior to or during therapy showed greater improvement in satisfaction than noninfidelity couples. Implications for therapy with infidelity couples are discussed.

Adult↗

PubMed2006

Resolving attachment injuries in couples using emotionally focused therapy: steps toward forgiveness and reconciliation.

The goal of this study was to use task analysis to verify that the attachment injury resolution model described in this article discriminates resolved from nonresolved couples. Twenty-four couples with an attachment injury received, on average, 13 sessions of emotionally focused therapy (EFT). At the end of treatment, 15 of the 24 couples were identified as resolved. Segments of best sessions for all couples were transcribed and rated on 2 process measures. Resolved couples were found to be significantly more affiliative and achieved deeper levels of experiencing than nonresolved couples. They also showed significant improvements in dyadic satisfaction and forgiveness than nonresolved couples. The results support the attachment injury resolution model and suggest that resolution during EFT is beneficial to couples.

Adaptation, Psychological↗

PubMed2005

A hierarchy of global coupling induced cluster patterns during the oscillatory H2-electrooxidation reaction on a Pt ring-electrode.

We report experimental results on spatiotemporal pattern formation during the oscillatory hydrogen electrooxidation reaction on a Pt ring-electrode under negative (desynchronizing) global coupling (GC). Spatially one-dimensional profiles of the interfacial potential drop along the angular direction of the ring electrode are recorded by means of a potential probe. The dynamics is investigated as a function of two control parameters, the applied voltage U and the strength of the global coupling. The latter is adjusted either by varying the distance between the working electrode (WE) and the reference electrode (RE) or by inserting a negative impedance device in series with the WE. In the absence of global coupling, uniform oscillations were destabilized by migration coupling, and electrochemical turbulence developed at large values of U (H. Varela, C. Beta, A. Bonnefont and K. Krischer, Phys. Rev. Lett., 2005, 94, 174104; ). Already low global coupling strengths sufficed to suppress turbulence. Instead, regular two-phase clusters formed. At higher coupling strength, a second type of two-phase cluster was observed as well as two types of irregular cluster patterns, which were connected with an irregular motion of the cluster boundaries and the emergence and disappearance of clusters through splitting and merging of the boundaries, respectively. Upon increasing the coupling strength even further, five-phase clusters were stabilized and at the highest coupling strength applied the cluster patterns transformed into strongly modulated pulses. The two types of two-phase clusters and the five-phase clusters are analyzed employing several signal processing techniques.

Journal Article↗

PubMed2000

Pregnancy and HIV-1 incidence in 178 married couples with discordant HIV-1 serostatus: additional experience at an HIV-1 counselling centre in the Democratic Republic of the Congo.

To determine the effect of an HIV-1 counselling programme on rates of HIV-1 infection and pregnancy in a large group of married couples in Kinshasa, DRC with discordant HIV-1 infection status, we conducted a baseline cross-sectional HIV-1 seroprevalence study in two large Kinshasa businesses. We identified 178 married couples (mean duration of marriage = 12.3 years) with discordant HIV-1 serostatus (92 M+F-/86 M-F+). Seroincidence and pregnancy rates were observed during 310 person-years of follow-up (PYFU). The 92 M+F- couples had an HIV-1 incidence of 3.7/100 PYFU and a pregnancy rate of 8.6/100. The 86 M-F+ couples had a pregnancy rate of 6.8/100 PYFU and an HIV-1 incidence of 6.8/100 PYFU. Couples seeking to have children but minimize their HIV-1 transmission risk frequently had unprotected sex only during the woman's perceived monthly fertility period. This strategy resulted in the birth of 24 live-born children and only one (4%; 95% CL = 0.0-21.6%) new HIV infection in couples having a child. Only 1 of 6 women who developed HIV-1 infection (16. 7%; 95 C.L. = 0-40.4%) became pregnant. While seronegative men had more extramarital sex once their wives' positive HIV-1 infection status became known, most of these episodes involved safe sex. Divorce was rare. This study provides additional information concerning issues of safe sex in married couples with discordant HIV-1 infection status, the dynamics of HIV transmission within couples and the effect of serostatus notification on the marriage and on intramarital and extramarital sexual behaviour in Kinshasa, Congo.

Adult↗

PubMed1998

Stoichiometry of coupling of rhodamine 123 transport to ATP hydrolysis by P-glycoprotein.

In order to describe the transport mechanism of P-glycoprotein, it is essential to know the coupling ratio, i.e. the moles substrate transported/mole ATP hydrolyzed. P-glycoprotein couples ATP hydrolysis at two ATP-binding sites to transport of a wide variety of neutral or cationic lipophilic compounds. Previously published coupling ratios have fallen within the range 0.02-0.8 mol substrate transported/mol ATP hydrolyzed. We studied the energetics of transport by P-glycoprotein, performing quantitative measurements of the rates of ATP hydrolysis and transport of rhodamine 123 by P-glycoprotein, using isolated P-glycoprotein-rich plasma membrane vesicles. The continuous fluorescence-based assay of rhodamine 123 transport allowed accurate measurement of initial transport rates. Since we measured uptake of rhodamine 123 into the vesicles as a loss of fluorescence, we avoided the problem of high background due to substrate binding to the membranes. The coupling ratio of the transport reaction increased as the rhodamine 123 concentration increased, showing that the basal ATPase activity of P-glycoprotein was progressively recruited for rhodamine 123 transport. Both of the previously identified transport sites of P-glycoprotein [Shapiro, A. B. & Ling, V. (1997a) Eur J. Biochem. 250, 130-137] were involved in transport of saturating concentrations of rhodamine 123. At saturating rhodamine 123 and 0.3 mM ATP, the coupling ratio was 0.83, suggesting a mechanistic coupling ratio of 1. Interestingly, the coupling ratio decreased as the ATP concentration increased so that, at 1.5 mM, close to the cytoplasmic concentration of ATP, the coupling ratio was 0.57. The physiological significance of this effect is not yet understood.

ATP Binding Cassette Transporter, Subfamily B, Mem↗

PubMed1998

Multiple coupling of human D5 dopamine receptors to guanine nucleotide binding proteins Gs and Gz.

We have demonstrated previously that D1 dopamine receptors are coupled to both Gs alpha and Go alpha. We examine here the coupling between human D5 dopamine receptors and G proteins in transfected rat pituitary GH4C1 cells. Similar to D1 receptors, cholera toxin treatment of cells reduced, but did not abolish, D5 agonist high-affinity binding sites, indicating D5 receptors couple to both Gs alpha and cholera toxin-insensitive G proteins. The interaction between D5 receptors and Gs alpha was confirmed by immunoprecipitation studies and by the ability of D5 receptors to stimulate adenylyl cyclase. Unlike D1 receptors, D5 receptors did not display any pertussis toxin-sensitive G-protein coupling to Go alpha or Gi alpha. D5 receptors were also not coupled to Gq alpha and were unable to mediate phosphatidylinositol metabolism. Instead, D5 sites appeared to be coupled to an AIF(-)4-sensitive, N-ethylmaleimide-resistant G protein. Anti-Gz alpha caused immunoprecipitation of 24.2 +/- 5.2% of G protein-associated D5 receptors, indicating coupling between D5 and Gz alpha. The coupling to Gz alpha was specific for D5 receptors, because similar associations were not detected between D1 receptors and Gz alpha.

Animals↗