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Using effective group potential methodology for predicting organometallic complex properties.

Using the Effective Group Potentials (EGP) method, optimal geometries, harmonic vibrational frequencies, and relative energies of different sets of metal complexes are calculated. All of the systems under consideration contain the cyclopentadienyl (Cp) ligand. They are as follows: (i). Group V metal Atom complexes showing one Cp ligand, (ii). a tetrameric Al-Cp compound with four Cp ligands, (iii). homometallic lutetium hydrides containing six cyclopentadienyl rings. Various electron correlation treatments have been carried out. All of the results compare very satisfactorily with available experimental data and with all-electron ab initio calculations performed for this work or published in the literature. Furthermore, the performance of the EGP method was tested on a rather large complex for which experimental evidence exists, but no all-electron calculation has been reported so far.

Journal Article↗

Bridging-driven condensation by eukaryotic SMC complexes is a conserved feature of genome organization.

The Structural Maintenance of Chromosome (SMC) protein family plays a central role in higher-order genome organization through ATP-dependent DNA loop extrusion by cohesin and condensin and other processes. Whether these activities fully account for the complexity of chromosome architecture remains unknown. Here, we uncover a conserved ATP-independent mechanism of chromatin condensation by SMC complexes, occurring via biomolecular condensation. Using single-molecule fluorescence imaging, we show that a variety of SMCs form dynamic DNA-bound condensates that exhibit key features of biomolecular condensates, including droplet coalescence, fluorescence recovery after photobleaching, and rapid exchange with free SMC complexes. Atomic force microscopy analysis of human cohesin-DNA assemblies reveals DNA-length-dependent clustering, providing evidence for bridging-driven condensation. Analyses of in vivo super-resolution imaging and high-throughput chromosome conformation capture (Hi-C) data indicate that these condensates form chromatin-associated clusters with multi-loop structures. Together, our results establish that SMC complexes employ ATP-independent phase condensation as well as ATP-dependent activities to shape genome architecture. This work reveals a broadly conserved principle of chromosomal organization across eukaryotes.

Chromosomal Proteins, Non-Histone↗

Flexibility and size heterogeneity of the LH1 light harvesting complex revealed by atomic force microscopy: functional significance for bacterial photosynthesis.

Previous electron microscopic studies of bacterial RCLH1 complexes demonstrated both circular and elliptical conformations of the LH1 ring, and this implied flexibility has been suggested to allow passage of quinol from the Q(B) site of the RC to the quinone pool prior to reduction of the cytochrome bc(1) complex. We have used atomic force microscopy to demonstrate that these are just two of many conformations for the LH1 ring, which displays large molecule-to-molecule variations, in terms of both shape and size. This atomic force microscope study has used a mutant lacking the reaction center complex, which normally sits within the LH1 ring providing a barrier to substantial changes in shape. This approach has revealed the inherent flexibility and lack of structural coherence of this complex in a reconstituted lipid bilayer at room temperature. Circular, elliptical, and even polygonal ring shapes as well as arcs and open rings have been observed for LH1; in contrast, no such variations in structure were observed for the LH2 complex under the same conditions. The basis for these differences between LH1 and LH2 is suggested to be the H-bonding patterns that stabilize binding of the bacteriochlorophylls to the LH polypeptides. The existence of open rings and arcs provides a direct visualization of the consequences of the relatively weak associations that govern the aggregation of the protomers (alpha(1)beta(1)Bchl(2)) comprising the LH1 complex. The demonstration that the linkage between adjacent protomer units is flexible and can even be uncoupled at room temperature in a detergent-free membrane bilayer provides a rationale for the dynamic separation of individual protomers, and we may now envisage experiments that seek to prove this active opening process.

Bacterial Proteins↗

Arene-ruthenium complexes of an acyclic thiolate-thioether and tridentate thioether derivatives resulting from ring-closure reactions.

The reaction of [(eta(6)-arene)RuCl(2)](2) (arene = C(6)Me(6), 1,4-MeC(6)H(4)CHMe(2)) with a large excess of the dianion of bis(2-mercaptoethyl) sulfide, (HSCH(2)CH(2))(2)S, obtained from deprotonation of the dithiol with freshly prepared NaOMe, gives the deep red, monomeric complexes [(eta(6)-arene)Ru(eta(3)-C(4)H(8)S(3))] (arene = C(6)Me(6) (5), 1,4-MeC(6)H(4)CHMe(2) (6)) in which the dianion is bound to the metal atom through one thioether and two thiolate sulfur atoms. Complex 5 reacts with [(eta(6)-C(6)Me(6))RuCl(2)](2) (4) in a 2:1 mole ratio to give a quantitative yield of the chloride salt of a binuclear cation [((eta(6)-C(6)Me(6))Ru)(2)Cl(mu(2)-eta(2):eta(3)-C(4)H(8)S(3))](+) (7) in which the thiolate sulfur atoms of the [(eta(6)-C(6)Me(6))Ru(eta(3)-C(4)H(8)S(3))] group bridge to a (eta(6)-C(6)Me(6))RuCl unit. This compound is also obtained directly from the reaction of 4 with the dithiolate, if the Ru dimer is used in large excess. The binuclear complex [((eta(6)-C(6)Me(6))Ru)(2)(MeCN)(mu(2)-eta(2):eta(3)-C(4)H(8)S(3))](PF(6))(2).MeCN, (9)(PF(6))(2).MeCN, is obtained by treatment of (7)Cl with NH(4)PF(6) in acetonitrile. Protonation of 5 with HCl gave the mono- and diprotonated derivatives viz. [(eta(6)-C(6)Me(6))Ru(eta(3)-C(4)H(9)S(3))]Cl, (8)Cl, and [(eta(6)-C(6)Me(6))Ru(eta(3)-C(4)H(10)S(3))]Cl(2), (10)Cl(2), respectively. The reaction of 5 with methyl iodide gives both the mono- and di-S-methylated derivatives. Treatment of 5 with dibromoalkanes, Br(CH(2))(n)Br (n = 1-5), effects ring closure to give the (eta(6)-C(6)Me(6))Ru dications containing the trithia mesocyclic zS3 (z = 8-12) ligands, isolated as their PF(6) salts. The X-ray crystal structures of 5, 6, the solvates of (7)Cl and (9)(PF(6))(2), and the trithia mesocyclic Ru complexes (eta(6)-C(6)Me(6))Ru(zS3)(PF(6))(2) (z = 8-11) are reported.

Journal Article↗

Heptanuclear and decanuclear manganese complexes with the anion of 2-hydroxymethylpyridine.

The synthesis and magnetic properties are reported of two new clusters [Mn(10)O(4)(OH)(2)(O(2)CMe)(8)(hmp)(8)](ClO(4))(4) (1) and [Mn(7)(OH)(3)(hmp)(9)Cl(3)](Cl)(ClO(4)) (2). Complex 1 was prepared by treatment of [Mn(3)O(O(2)CMe)(6)(py)(3)](ClO(4)) with 2-(hydroxymethyl)pyridine (hmpH) in CH(2)Cl(2), whereas 2 was obtained from the reaction of MnCl(2).4H(2)O, hmpH, and NBu(n)(4)MnO(4) in MeCN followed by recrystallization in the presence of NBu(n)(4)ClO(4). Complex 1.2py.10CH(2)Cl(2).2H(2)O crystallizes in the triclinic space group P1. The cation consists of 10 Mn(III) ions, 8 mu(3)-O(2)(-) ions, 2 mu(3)-OH(-) ions, 8 bridging acetates, and 8 bridging and chelating hmp(-) ligands. The hmp(-) ligands bridge through their O atoms in two ways: two with mu(3)-O atoms and six with mu(2)-O atoms. Complex 2.3CH(2)Cl(2).H(2)O crystallizes in the triclinic space group P1. The cation consists of four Mn(II) and three Mn(III) ions, arranged as a Mn(6) hexagon of alternating Mn(II) and Mn(III) ions surrounding a central Mn(II) ion. The remaining ligation is by three mu(3)-OH(-) ions, three terminal chloride ions, and nine bridging and chelating hmp(-) ligands. Six hmp(-) ligands contain mu(2)-O atoms and three contain mu(3)-O atoms. The Cl(-) anion is hydrogen-bonded to the three mu(3)-OH(-) ions. Variable-temperature direct current (dc) magnetic susceptibility data were collected for complex 1 in the 5.00-300 K range in a 5 kG applied field. The chi(M)T value gradually decreases from 17.87 cm(3) mol(-1) K at 300 K to 1.14 cm(3) mol(-1) K at 5.00 K, indicating an S = 0 ground state. The ground-state spin of complex 2 was established by magnetization measurements in the 0.5-3.0 T and 1.80-4.00 K ranges. Fitting of the data by matrix diagonalization, incorporating only axial anisotropy (DS(z)(2)), gave equally good fits with S = 10, g = 2.13, D = -0.14 cm(-1) and S = 11, g = 1.94, D = -0.11 cm(-1). Magnetization versus dc field scans down to 0.04 K reveal no hysteresis attributable to single-molecule magnetism behavior, only weak intermolecular interactions.

Journal Article↗

Bimetallic complexes from amphoteric group 13/15 ligands: syntheses and X-ray crystal structures.

Bimetallic, pentel-bridged complexes of the type [(dmap)Me2M-E(SiMe3)2-M'(CO)n] (M=Al, Ga; E=P, As, Sb; M'=Cr, Fe, Ni; DMAP=4-(dimethylamino)pyridine) are formed by reactions of DMAP-coordinated monomeric Group 13/15 compounds [(dmap)Me2M-E(SiMe3)2] with the transition metal complexes [(Me3N)Cr(CO)5], [Fe3(CO)12], and [Ni(CO)4]. For the first time, this reaction offers a general pathway to compounds containing a Group 13 metal and a transition metal bridged by a pentel atom. Complexes prepared in this way were characterized by IR and multinuclear NMR spectroscopy and by single-crystal X-ray structure analysis. Their electronic and structural properties are discussed in detail. The Group 13/15 ligands are very weak acceptors, which is likely to be due to the electropositive Group 13 metal, and the complexes feature comparatively long pentel-transition metal bonds. In addition, the synthesis and structural characterization of the parent DMAP-coordinated gallanes [(dmap)Me2Ga-E(SiMe3)2] (E=P, As) are reported.

Journal Article↗

Different binding kinetics of Serratia 56K protease with plasma alpha 2-macroglobulin and chicken egg white ovomacroglobulin.

We recently reported that Serratia 56K protease is inhibited by plasma alpha 2 macroglobulin (alpha 2M) temporarily and by chicken egg white ovomacroglobulin (ovoM) continuously (Molla, A. et al. (1986) Infect. Immun. 53, 522-529). The inhibition of this protease is almost complete with ovoM whereas it is incomplete with alpha 2M, although these two macroglobulins show homology and many similarities. In the present study we determined the apparent numbers of binding sites and binding constants for the two macroglobulins by means of the fluorescence polarization method using FITC-labeled 56K protease. The time courses of complex formation of 56K protease with alpha 2M and ovoM were different; with ovoM it was complete within 5 min while with alpha 2M 150 min was required. Their apparent molecular volumes were also different; the fluorescence polarization value of the E/I complex was 18.7% larger with ovoM than with alpha 2M. The association constants obtained on Scatchard plot analysis with 56K protease and alpha 2M or ovoM were 0.33 X 10(7) M-1 and 1.09 X 10(7) M-1, respectively. One molecule of each of these macroglobulins binds 1.13 and 1.35 molecules of 56K protease, respectively. Upon E/I complex formation, an increase in amino groups due to proteolysis was noted in both cases, but more progressive proteolysis was observed in the case of alpha 2M. Furthermore, when the 56K protease was inactivated through the depletion of Zn atoms, complex formation did not occur.

Amino Acids↗

Molecular dynamics simulation of MHC-peptide complexes as a tool for predicting potential T cell epitopes.

The class I major histocompatibility complex-encoded HLA-B*2705 protein was simulated in complex with six different peptides exhibiting unexpected structure-activity relationships. Various structural and dynamical properties of the solvated protein-peptide complexes (atomic fluctuations, solvent-accessible surface areas, hydrogen bonding pattern) were found to be in qualitative agreement with the available binding data. Peptides that have been experimentally shown to bind to the protein remained tightly anchored to the MHC molecule, whereas nonbinders were significantly more weakly complexes to the protein and progressively dissociate from it at their N- and C-terminal ends. The molecular dynamics simulations emphasize the unexpectedly important role of secondary anchors (positions 1 and 3) in influencing the MHC-bound conformation of antigenic nonapeptides. Furthermore, it confirms that dominant anchor residues cannot solely account for peptide binding to a class I MHC molecule. The molecular dynamics method could be used as a complementary tool to T cell epitope predictions from the primary sequences of proteins of immunological interest. It is better suited to MHC proteins for which a crystal structure already exists. Furthermore, it may facilitate the engineering of T cell epitopes as well as the rational design of new MHC inhibitors designed to fit optimally the peptide binding cleft.

Amino Acid Sequence↗

Physical and tumor biological aspects and calculation model of dosage in boron neutron capture therapy (BNCT).

Fundamentally different aspects apply to dosage in boron neutron capture therapy (BNCT) compared to that in the case of normal radiotherapy with photons, electrons or heavy particles such as neutrons. The reason is that the latter only requires a knowledge of the stochastic distribution of the absorbed dose within cells, radiation quality and atomic composition of tissue in the regions of interest, whereas for the former the absolute concentration and microscopic distribution of 10B atoms in inter- and intracellular spaces of tumor and healthy cells is additionally of equal importance. The effects of radiation without 10B must always be superimposed on those of heavy particles resulting from neutron capture reactions on 10B atoms. Complex geometrical calculations are necessary with respect to ranges of the heavy particles smaller than a cell diameter. Apart from the direct effects of radiation without 10B, the dosage therefore depends on thermal neutron fluence, 10B concentration, its extreme inhomogeneous macroscopic distribution in the tumor tissue, the cellular localization of the 10B atoms in the large intercellular space, the cell membrane, within cytoplasm or the cell nucleus, the geometrical probability of hitting the cell nucleus, and that such a hit finally results in a cell killing, and a Poisson statistical enhancement factor, which describes the dose-effect relation for cell survival. The calculations necessary are demonstrated in the case of a normal and a tumor cell type, each with representative cell diameter and nucleus size. It is evident that the microscopic distribution of 10B atoms is one of the most critical parameters which is still insufficiently known.

Boron Neutron Capture Therapy↗

Electrospray ionization mass spectrometric study of Cu(I) and Cu(II) bipyridine complexes employed in atom transfer radical polymerization

We report an electrospray ionization mass spectrometric study of Cu(I) and Cu(II) bipyridine complexes employed in atom transfer radical polymerization. Mass spectra of Cu(I)Br complexed with 2 equiv. of 4,4'-di(5-nonyl)-2,2'-bipyridine (dNbpy) in toluene, methyl acrylate or styrene showed the presence of [Cu(I)(dNbpy)(2)](+) cation and [Cu(I)Br(2)](-) anion. For the Cu(II)Br(2)/2dNbpy system, [Cu(II)(dNbpy)(2)Br](+), [Cu(II)(dNbpy)Br](+), [Cu(I)Br(2)](-), [Cu(II)Br(3)](-) and [Cu(II)(dNbpy)Br(3)](-) species were observed. In addition, for mixed Cu(I)Br/2dNbpy and Cu(II)Br(2)/2dNbpy systems, the negative ion mode showed only the presence of [Cu(I)Br(2)](-) anions, which are potentially formed through halogen exchange between [Cu(II)Br(3)](-) and [Cu(I)(dNbpy)(2)](+). Copyright 2000 John Wiley & Sons, Ltd.

Journal Article↗

Complexes of Multifunctional Phosphorus Ligands. Rhenium(V) Complexes of the Multidentate Phenoxyphosphine Ligands Bis(o-trimethylsilyloxyphenyl)phenylphosphine and Tris(o-trimethylsilyloxyphenyl)phosphine. Stepwise Elimination of Me(3)SiX (X = Cl, OEt) from the Metal-Ligand System.

The silylated aryloxo ligands bis(o-silyloxyphenyl)phenylphosphine (abbreviated PhP{OT}(2)) and tris(o-trimethylsilyloxyphenyl)phosphine (abbreviated P{OT}(3), where T = Me(3)Si) were prepared. Complexation reactions with O=ReCl(2)(OEt)(PPh(3))(2) and O=ReCl(3)(PPh(3))(2) proceed by displacement of one PPh(3) and the subsequent stepwise replacement of the OEt and/or Cl substituents. The new complex Re(O)Cl(2)[kappa(2)-(P,O)-(PhP{O}{OT})](PPh(3)), formed by elimination of Me(3)SiOEt, exists in diastereomeric cis and trans forms. Elimination of a second equivalent of Me(3)SiCl gives Re(O)Cl[kappa(3)-(P,O,O)-(PhP{O}(2))](PPh(3)). Similarly P{OT}(3) converts Re(O)Cl(2)(OEt)(PPh(3))(2) to ReOCl(2)[kappa(2)-(P,O)-(P{O}{OT}(2))](PPh(3)) (5) (structurally characterized as 5.0.875CH(2)Cl(2)): crystal data; triclinic P&onemacr;, a = 14.302(4) Å, b = 18.734(2) Å, c = 17.639(4) Å, alpha = 80.950(12) degrees, beta = 80.12(2) degrees, gamma = 81.76(2) degrees, Z = 4. Final R(1) and wR(2) values are 0.0852 and 0.1525, respectively on F(o)(2) > 2sigma(F(o)(2)) data (or 0.1948 and 0.2019 on all data). The phenoxy phosphine ligand in 5 is bound via P and one O to Re. The P atoms are mutually cis to each other and to the terminal oxygen on Re. Two ortho-trimethylsiloxy substituted phenyl rings dangle from the coordinated phosphorus atom. Complex 5 can be converted to Re(O)Cl[kappa(3)-(P,O,O)-(P{O}(2){OT})](PPh(3)) (6) by treatment with PPN(+) Cl(-) and 6 was also obtained by direct reaction of Re(O)Cl(3)(PPh(3))(2) with P{OT}(3) at higher temperatures. The complex 6 has been structurally characterized: crystal data triclinic, P&onemacr;, a = 10.1509(6) Å, b = 12.1123(8) Å, c = 16.2142(14) Å, alpha = 97.851(7) degrees, beta = 94.852(7) degrees, gamma = 96.889(6) degrees, Z = 2. Final R(1) and wR(2) values were 0.0303 and 0.0721 on F(o)(2) > 2sigma(F(o)(2)) data (or 0.0348 and 0.0742 on all data). The phenoxyphosphine ligand in 6 is bound facially to Re through P and two of the phenoxy oxygens. The Ph(3)P group and terminal oxygen atoms are cis to the oxygen atoms of the phenoxy ligands and the Cl lies trans to P. One trimethylsiloxyphenol group dangles. Careful hydrolysis of 6 gave Re(O)Cl[kappa(3)-(P,O,O)-(P{O}(2){OH})](PPh(3)) which was also formed during complexation reactions in moist solvent. Solution (31)P{(1)H} NMR demonstrated cis- or trans-(P,P) geometry for the complexes, which was confirmed in the two aforementioned cases by structure determinations.

Journal Article↗

Structure of the calcium-dependent lectin domain from a rat mannose-binding protein determined by MAD phasing.

Calcium-dependent (C-type) animal lectins participate in many cell surface recognition events mediated by protein-carbohydrate interactions. The C-type lectin family includes cell adhesion molecules, endocytic receptors, and extracellular matrix proteins. Mammalian mannose-binding proteins are C-type lectins that function in antibody-independent host defense against pathogens. The crystal structure of the carbohydrate-recognition domain of a rat mannose-binding protein, determined as the holmium-substituted complex by multiwavelength anomalous dispersion (MAD) phasing, reveals an unusual fold consisting of two distinct regions, one of which contains extensive nonregular secondary structure stabilized by two holmium ions. The structure explains the conservation of 32 residues in all C-type carbohydrate-recognition domains, suggesting that the fold seen here is common to these domains. The strong anomalous scattering observed at the Ho LIII edge demonstrates that traditional heavy atom complexes will be generally amenable to the MAD phasing method.

Acute-Phase Proteins↗

Dendrimers as ligands: an investigation into the stability and kinetics of Zn2+ complexation by dendrimers with 1,4,8,11-tetraazacyclotetradecane (cyclam) cores.

We have investigated the complexation of Zn(2+) with 1,4,8,11-tetrakis(naphthylmethyl) cyclam (1; cyclam=1,4,8,11-tetraazacyclotetradecane) and with two dendrimers consisting of a cyclam core with four dimethoxybenzene and eight naphthyl appendages (2), and twelve dimethoxybenzene and sixteen naphthyl appendages (3). An important, common feature of model compound 1 and dendrimers 2 and 3 is that their potentially fluorescent naphthyl units are quenched by exciplex formation with the cyclam nitrogen atoms. Complexation with Zn(2+), however, prevents exciplex formation and results in the appearance of an intense naphthyl fluorescence signal that can be used for monitoring the complexation process. Luminescence titration, together with competition experiments and (1)H NMR titration, have shown that 1:1 and 1:2 (metal/ligand) complexes are formed in the cases of 2 and 3, whereas model compound 1 gives only a 1:1 complex. We have also investigated the 1:1 complexation kinetics by the stopped-flow technique. In the case of 1, a second-order process (k(1)=44x10(5) M(-1) s(-1)) is followed by two consecutive first-order steps (k(2)=0.53 s(-1) and k(3)=0.10 s(-1)). For 2, a slower second-order process (k(1)=4.9x10(5) M(-1) s(-1)) is followed by a slow first-order step (k(2)=0.40 s(-1)). In the case of 3, only a very slow second-order process was observed (k(1)=1.2x10(5) M(-1) s(-1)). The different metal-ion incorporation rates for model compound 1 and dendrimers 2 and 3 have been discussed in terms of conformational changes of the dendron subunits affecting the chelating properties of the cyclam core. This work reports the first kinetic study on metal-ion coordination by dendrimers with a well-defined coordination site.

Journal Article↗

Synthesis and Structure of Pd(II) Complexes Containing the C,C-Chelating Bis-Ylide Ligand [Ph(3)P=C(H)](2)CO. X-ray Crystal Structure of {Pd(&mgr;-Cl){[C(H)PPh(3)](2)CO}}(2)(ClO(4))(2).CH(2)Cl(2).

The reaction of Pd(OAc)(2) with the bis(phosphonium) salt [Ph(3)PCH(2)COCH(2)PPh(3)]Cl(2) (1:1 molar ratio) results in the formation of the cis-dichlorobis(ylide) derivative Cl(2)Pd{[C(H)PPh(3)](2)CO}, 1, in which the bis(ylide) ligand [C(H)PPh(3)](2)CO acts as a chelating group through the two ylide carbon atoms. Complex 1 reacts with TlClO(4) (1:1 molar ratio) to give [Pd(&mgr;-Cl){[C(H)PPh(3)](2)CO}](2)(ClO(4))(2), 2, which reacts with two further equivalents of TlClO(4) in NCMe to give [Pd{[C(H)PPh(3)](2)CO}(NCMe)(2)](ClO(4))(2) 3. The reactivity of 2 and 3 has been explored. Compound 2 reacts with pyridine, 3,5-lutidine, or Ph(3)P=C(H)CN (1:2 molar ratio), resulting in the rupture of the chlorine bridging system and formation of [PdCl{[C(H)PPh(3)](2)CO}(L)](ClO(4)) (L = py (4), 3,5-lu (5), NC-C(H)=PPh(3) (6)), and with Tlacac (1:2 molar ratio) with formation of the acetylacetonate [Pd(acac){[C(H)PPh(3)](2)CO}](ClO(4)), 7. On the other hand, complex 3 reacts with the ylide Ph(3)P=C(H)CN (1:2 molar ratio) giving [Pd{[C(H)PPh(3)](2)CO}[NC-C(H)=PPh(3)](2)](ClO(4))(2), 8, which contains two N-coordinated ylides, and with NBu(4)OH (1:1) to give [Pd(&mgr;-OH){[C(H)PPh(3)](2)CO}](2)(ClO(4))(2), 9. The reaction of Pd(OAc)(2) with the ylide phosphonium salt [Ph(3)P=C(H)COCH(2)PPh(3)](ClO(4)) (1:1) gives the acetate dimer [Pd(&mgr;-OOCCH(3)){[C(H)PPh(3)](2)CO}](2)(ClO(4))(2), 10. The structures of complexes 1-10 were deduced from their spectroscopic data and from the resolution of the molecular structure of complex 2.CH(2)Cl(2).

Journal Article↗

Synthesis, Structure, and Reactivity of Ruthenium and Osmium Nitrido Complexes with 1,2-Benzenedithiolate Ligands: N- versus S-Alkylation.

The reactivity of the nitrido complexes (N(n)Bu(4))[Ru(N)(S(2)C(6)H(4))(2)] (1) and (N(n)Bu(4))[Os(N)(S(2)C(6)H(4))(2)] (2) (C(6)H(4)(SH)(2) = 1,2-benzenedithiol) toward electrophiles, R(+) (R = Me, Et, Ph(3)C), is described. While 1 yielded intractable mixtures of products, 2 could be cleanly alkylated. The synthesis of 1 has been reported previously (Z.Naturforsch. 1987, 42B, 341); complex 2 can be synthesized by treating (N(n)Bu(4))[Os(N)Cl(4)] with deprotonated 1,2-benzenedithiol in acetone/MeOH at 0 degrees C. Complexes 1 and 2 are isostructural and crystallize in the orthorhombic space group Pna2(1), Z = 8, with a = 36.881(6) Å, b = 9.402(2) Å, and c = 17.652(2) Å for 1 and a = 37.042(4) Å, b = 9.375(2) Å, and c = 17.671(2) Å for 2. The anions of both compounds consist of a five-coordinate mononuclear center with a distorted square-pyramidal geometry; a terminal nitrido ligand occupies the apical position and two chelating (S(2)C(6)H(4))(2)(-) ligands form the basal plane. Treatment of 2 with R(3)OBF(4) in CH(2)Cl(2) yields [Os(N)(S(2)C(6)H(4))(SC(6)H(4)SR)] (R = Me, 3; R = Et, 4) where one thiolate donor is alkylated. Alkylation of the sulfur of the 1,2-benzenedithiolate ligand was confirmed by NMR spectroscopy and X-ray crystallography (for 3). Complex 3.CH(2)Cl(2) crystallizes in the orthorhombic space group P2(1)2(1)2(1), Z = 4, with a = 8.551(1) Å, b = 10.772(2) Å, and c = 19.716(3) Å. In contrast, treatment of 2 with Ph(3)CPF(6) in CH(2)Cl(2) yields [Os(NCPh(3))(S(2)C(6)H(4))(2)] (5), whose (1)H and (13)C NMR spectra indicate that the terminal nitride is the site of electrophilic attack. X-ray crystallography further confirms the alkylation at the nitrogen atom; complex 5 crystallizes in the triclinic space group P&onemacr;, Z = 2, with a = 9.338(8) Å, b = 10.001(3) Å, c = 16.280(6) Å, alpha = 75.88(3) degrees, beta = 74.29(6) degrees, and gamma = 69.55(5) degrees.

Journal Article↗

[Effect of supporting substrates on the structure of DNA and DNA-trivaline complexes studied by atomic force microscopy].

Linear DNA, circular DNA, and circular DNA complexes with trivaline (TV), a synthetic oligopeptide, were imaged by atomic force microscopy (AFM) using mica as a conventional supporting substrate and modified highly ordered pyrolytic graphite (HOPG) as an alternative substrate. A method of modifying the HOPG surface was developed that enabled the adsorption of DNA and DNA-TV complexes onto this surface. On mica, both purified DNA and DNA-TV complexes were shown to undergo significant structural distortions: DNA molecules decrease in height and DNA-TP displays substantial changes in the shape of its circular compact structures. Use of the HOPG support helps preserve the structural integrity of the complexes and increase the measured height of DNA molecules up to 2 nm. AFM with the HOPG support was shown to efficiently reveal the particular points of the complexes where, according to known models of their organization, a great number of bent DNA fibers meet. These results provide additional information on DNA organization in its complexes with TV and are also of methodological interest, since the use of the modified HOPG may widen the possibilities of AFM in studying DNA and its complexes with various ligands.

Adsorption↗

Antitumoral activity of a sulphur-containing platinum complex with an acidic pH optimum.

UNLABELLED: Platinum complexes are essential tools for cancer treatment despite their toxic side effects. Here we describe a new platinum complex with sulphurs as complexing atoms (thioplatin). PURPOSE: To demonstrate that the antitumoral activity of a new sulphur-containing platinum compound (thioplatin) depends on a slightly acidic pH. METHODS: Platinum uptake by tumour cells and interaction with DNA was determined at slightly acidic or alkaline pH. To demonstrate low in vivo toxicity the effects of thioplatin on body weight, blood urea nitrogen, white blood cell count and the histopathological appearance of small intestines and kidneys were evaluated at doses that displayed antitumoral effects against human small-cell lung cancer and human colorectal cancer xenotransplants in nude mice. RESULTS: The slightly acidic pH optimum of thioplatin was proven by the altered electrophoretic mobility of plasmid DNA, quantitation of the platinum content in the DNA of tumour cells and cytotoxicity studies. Thioplatin displayed antitumoral activity without severe side effects such as weight loss, renal ischaemia, destruction of villi in the small intestine or leukopenia as observed at comparable doses of cisplatin. Furthermore, probably due to its lipophilic nature, thioplatin was taken up readily even by cisplatin-resistant cells. In vivo studies with human tumour xenografts in nude mice showed a therapeutic index of thioplatin five to ten times higher than that of cisplatin.

Animals↗

Interactions of metal ions with two quinolone antimicrobial agents (cinoxacin and ciprofloxacin). Spectroscopic and X-ray structural characterization. Antibacterial studies.

Several novel metal-quinolone compounds have been synthesized and characterized by analytical, spectroscopic and X-ray diffraction methods. The crystal structure of the four compounds, Na(2)[(Cd(Cx)3)(Cd(Cx)3(H2O))].12H2O, [Co(Cp)2(H2O)2].9H2O, [Zn(Cp)2(H2O)2].8H2O and [Cd(HCp)2(Cl)2].4H2O, is presented and discussed: HCx=1-ethyl-1,4-dihydro-4-oxo(1,3)-dioxolo(4,5-g)cinnoline-3-carboxylic acid and HCp=1-cyclopropyl-6-fluoro-1,4-dihydro-4-oxo-7-(1-piperazinyl)-3-quinoline carboxylic acid. In all these compounds the quinolone acts as a bidentate chelate ligand that binds through one carboxylate oxygen atom and the exocyclic carbonyl oxygen atom. Complexes of ciprofloxacin were screened for their activity against several bacteria, showing activity similar to that of the ligand. In addition, the number of bacteria killed after 3 h of incubation with the ligand, [Co(Cp)2(H2O)2].9H2O, Ni(Cp)2.10H2O and Cu(Cp)2.6H2O, was determined against S. aureus ATCC25923. There is a direct relationship between the growth rate and the lethal rate. Against growing bacteria, the ligand is the most bactericidal and Cu(Cp)2.6H2O is the less bactericidal. On the contrary, against non-dividing bacteria, the complexes were more bactericidal than the ligand, with Cu(Cp)(2).6H(2)O the most bactericidal compound.

Anti-Infective Agents↗