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Non-destructive prediction of lead content in oilseed rape leaves by fluorescence hyperspectral technology based on neural network.

Based on fluorescence hyperspectral imaging (FHSI), this study targeted rapid, non-destructive quantification of lead (Pb) content in oilseed rape leaves treated with varying silicon (Si) concentrations, acquiring fluorescence spectra over the 484.43-1001.61 nm wavelength range. To optimize spectral data quality, preprocessing methods (Savitzky-Golay smoothing, first derivative, detrending) were comprehensively compared. Characteristic wavelengths were then selected via interval variable iterative shrinkage, which effectively compressed data dimensionality and reduced computational load. A hybrid SE-CL1DA model, fusing a 1D convolutional neural network, a long short-term memory network and SE attention mechanism was constructed, with Bayesian optimization tuning hyperparameters to boost stability. The BO-SE-CL1DA outperformed both traditional machine learning and insufficiently optimized deep learning model (Rp2=0.9609, RMSE = 0.0377 mg/kg, RPD = 5.1736), thus enabling accurate Pb estimation, supporting Si-regulated heavy metal stress management and facilitating agricultural contamination monitoring.

Plant Leaves

[Analysis of gamma-ray spectra by using fast Fourier transform (author's transl)].

In order to simplify the mass data processing in a response matrix method for gamma-ray spectral analysis, a method using a Fast Fourier Transform devised. The validity of the method was confirmed by a computer simulation for spectra of a NaI detector. The method uses the fact that spectral data can be represented by Fourier series with reduced number of terms. The estimation of intensities of gamma-ray components is performed by a matrix operation using the compressed data of an observation spectrum and standard spectra in Fourier coefficients. The identification of gamma-ray energies is also easy. Several features in the method and a general problem to be solved in a response matrix method are described.

Fourier Analysis

Effect of moisture content on compression properties of two dextrose-based directly compressible diluents.

Moisture sorption characteristics and the effect of moisture content on the compression properties of two dextrose-based directly compressible diluents, namely, Emdex (diluent A) and Sweetrex (diluent B) were studied. Both diluents sorbed moisture rapidly at relative humidities greater than 60%. For both the diluents, pressures required to compress tablets to the same relative density decreased with increasing moisture content. Yield pressures calculated from linear Heckel plots obtained from the compression data of both diluents reflected decreasing values with increasing moisture content. Three-way surface profile graphs of moisture content versus tablet parameters such as crushing force, relative density, and compression pressure give a unique overall picture of the compression properties of a diluent and offer the tablet formulator a useful tool for diluent comparison.

Chemical Phenomena

SKiM: accurately classifying metagenomic ONT reads in limited memory.

MOTIVATION: Oxford Nanopore Technologies' devices, such as MinION, permit affordable, real-time DNA sequencing, and come with targeted sequencing capabilities. Such capabilities create new challenges for metagenomic classifiers that must be computationally efficient yet robust enough to handle potentially erroneous DNA reads, while ideally inspecting only a few hundred bases of a read. Currently available DNA classifiers leave room for improvement with respect to classification accuracy, memory usage, and the ability to operate in targeted sequencing scenarios. RESULTS: We present SKiM: Short K-mers in Metagenomics, a new lightweight metagenomic classifier designed for ONT reads. Compared to state-of-the-art classifiers, SKiM requires only a fraction of memory to run, and can classify DNA reads with higher accuracy after inspecting only their first few hundred bases. To achieve this, SKiM introduces new data compression techniques to maintain a reference database built from short k-mers, and treats classification as a statistical testing problem. AVAILABILITY AND IMPLEMENTATION: SKiM source code, documentation, and test data are available from: https://gitlab.com/SCoRe-Group/skim.

Metagenomics

Automated electrocardiogram analysis: the state of the art.

The overwhelming number of electrocardiograms (ECGs) now recorded routinely has prompted the development of computer analysis which in turn has benefited electrocardiography with important technological advances. All automated ECG analysis systems adopt a similar approach: a measurement program and a program that interprets the clinical significance of these measurements along with a rhythm analysis algorithm. Measurement, selection and classification of parameters vary according to the program used. Data compression is applied to the signal to reduce processing time and allow long-term storage. Diagnostic accuracy, however, is not greatly improved over that of experienced cardiologists. Programs studied using a validated data bank provided by an international group of cardiologists show a variability not only in parameter measurement but also in diagnostic statement and in the way in which such statements are expressed. Recommendations for measurement standards have been made to fulfil the need for exchange of diagnostic criteria. No recommendations concerning the selection of parameters have been proposed, and so new parameters or combinations of parameters can be introduced with the ultimate aim of increased diagnostic performance.

Diagnosis, Computer-Assisted

Teleradiology via narrow-band integrated services digital network (N-ISDN) and Joint Photographic Experts Group (JPEG) image compression.

The importance of remote access to both radiological images and medical information has stimulated many demonstration projects that use a variety of telecommunications providers' offerings. Teleradiology, through modest cost channels, can achieve adequate response times using a combination of narrow-band integrated services digital network (N-ISDN) and data compression. A demonstration project, developed in collaboration with Southwestern Bell Technology Resources, Inc, uses the aggregate bandwidth of two B channels (achieving a rate of 120 kilobits per second) and a block-oriented discrete cosine transform compression/decompression implementation based on the Joint Photographic Experts Group Standard for Still Image Compression. System response measurements for an Inquiry and Display Station accessing the Mallinckrodt Institute of Radiology's Radiology Image and Information Management Testbed via the N-ISDN connection show response times to be within 20 seconds. Viewing applications have been shown at sites within St Louis and at Radiological Society of North America, 1990, in Chicago.

Computer Communication Networks

Perimeter encoding for teleradiology.

Perimeter encoding is a technique of data compression that is done simply by outlining the area of interest on an examination. In a sample of 92 emergency room examinations (excluding chest, abdomen, and pelvic exams), 304 films were interpreted by a resident radiologist who indicated the area of interest by marking four corners of a rectangle. The adequacy of the area of interest was determined by a staff osteoradiologist during subsequent review of the films. The amount of data reduction was measured by determining the ratio of the area of interest inside a rectangle to the area of the film (compression ratio). The overall average compression ratio was 3 to 1. This preliminary study suggests that further evaluation of perimeter encoding is warranted.

Emergency Medical Service Communication Systems

Radiological image compression using full-frame cosine transform with adaptive bit-allocation.

We report a new bit-allocation scheme based on the full-frame cosine transform for radiological image compression. The new technique differs from a previously reported method in its use of a two-dimensional bit-allocation table to encode the compression data. This allows for an improved treatment of high frequency components in the transform domain. Consequently, it has the capability of faithfully reproducing limited numbers of high-contrast sharp edges in the image. Previously reported artifacts, induced in the reconstructed image by sharp edges in the original, have been eliminated. Experiments with 10 radiological chest images show almost no perceivable degradation in the reconstructed image at compression ratios below 10:1. Image quality at a fixed compression ratio is, in every case, comparable or superior to results using the old method. Furthermore, the new algorithm lends itself to hardware implementations that are both simple and fast.

Algorithms

Toward computerized morphometric facilities: a review of 58 software packages for computer-aided three-dimensional reconstruction, quantification, and picture generation from parallel serial sections.

This review gives an inventory of 58 computer-aided three-dimensional reconstruction applications in the domain of biomedical research. It is devoted to the formulation of a set of recommendations thought to be necessary for improved performance of software packages in this field. These recommendations can be used to select packages and to guide future developments of existing reconstruction systems. The survey is restricted to three-dimensional reconstructions based upon a series of parallel sections of an object. Subjects treated are programming languages, resolution and sampling, input preparation, realignment, local deformation of slices, numerical quantifications, topological complexity, internal representation, display complexity (hidden surfaces, shading, smoothing), structure extraction, descriptive elements, database, data compression, time efficiency of systems and algorithms, hardware configuration, input devices, input media, interactive aids, display devices, and output devices. Information for this survey comes from articles that appeared between 1965 and 1985.

Computers

Selective archiving of radiologic images.

The increasing number of radiographic images is a problem in most radiology departments. The problem will be emphasized with the introduction of digital acquisition and storage of radiographs. Changes in image management strategies will therefore become necessary. Such strategies will have great technologic and financial impact and will probably determine the applicability and success of digital radiography. Based on the experience that not all radiographs are equally important and on the assumption that not every image in a radiology archive can be maintained on-line, we investigated the effect of storing only selected, clinically informative radiographs; i.e., clinical data compression. In 165 routine examinations (77 barium enemas, 16 barium meals and 72 urographies) 2433 films were used (14.7 films per examination). We archived only the 461 films (19%) which were considered to be of future informative value. During a one-year follow-up period none of the 1972 removed films was requested. This indicates that a considerable number of films and a considerable amount of image data can be removed from the archive without affecting the clinical work.

Humans

Data collection and analysis from a respiratory inductance plethysmograph.

A respiratory inductance plethysmograph, Respitrace, was used to assess the respiratory effects of narcotic analgesia for the first 24 hours after surgery. Data were collected on-line from the plethysmograph with an Apple][+ microcomputer and stored on disc for later analysis of respiratory rates and tidal volumes, and also periods of central or obstructive apnoea using the difference in phase angle between the abdominal and respiratory components. This involved the measurement of, on average, more than 20,000 breaths per patient and techniques of data compression were required to store this amount of information on a single floppy disc. Frequent nursing interventions reduced the accuracy of tidal volume and phase angle measurements, but respiratory rates were obtained accurately breath by breath.

Calibration

An interactive multivariate analysis of FCM data.

The procedure and results of the interactive multivariate analysis of FCM data are described. Using principal-components analysis, cluster analysis, and interactive maneuvers, this procedure facilitates an effective data compression from a four-dimensional space into two-dimensional space, then allows cluster separation. The procedure is especially effective for separating clusters, which are degenerated in the usual scattergrams. Programs were mostly written in C language on MS-DOS and were tested on four-dimensional analysis of the blood cells, which resulted in a successful separation of the degenerated clusters.

Cell Separation

Circular harmonic averaging of rotary-shadowed and negatively stained creatine kinase macromolecules.

The structure of mitochondrial creatine kinase is investigated by high-resolution shadowing at very low temperature and conventional negative staining. The electron microscopic images are analyzed with circular harmonic averaging, a method suited for the processing of single molecules. The rotational alignment and averaging is performed with the circular harmonic components, which allows data compression and several steps of noise reduction to be carried out within the averaging procedure. In addition, the symmetry can be deduced. For the mitochondrial creatine kinase, a fourfold symmetry is found that is compatible with the biochemical and biophysical characterization of the molecule.

Creatine Kinase

Flexibility of globular proteins in water as revealed by compressibility.

In order to elucidate the flexibility-structure-function relationships of proteins, the adiabatic compressibility of about 30 globular proteins, including food proteins, was determined by means of sound velocity and density measurements in aqueous solutions. Most proteins studied showed positive compressibility, indicating the large internal flexibility of the molecules. The volume fluctuation was in the range of 30-200 ml/mol, which corresponded to about 0.3% of the total protein volume. From the statistical analyses of the compressibility data, it was found that the flexibility of proteins is closely related to structural factors such as hydrophobicity, helix element, and amino acid composition, and to functional properties such as digestibility and foaming capacity. These results indicate that the dynamics of protein structure should be taken into account in predicting precisely the functions and properties of a protein from its primary or tertiary structure.

Amino Acids

Auto-association by multilayer perceptrons and singular value decomposition.

The multilayer perceptron, when working in auto-association mode, is sometimes considered as an interesting candidate to perform data compression or dimensionality reduction of the feature space in information processing applications. The present paper shows that, for auto-association, the nonlinearities of the hidden units are useless and that the optimal parameter values can be derived directly by purely linear techniques relying on singular value decomposition and low rank matrix approximation, similar in spirit to the well-known Karhunen-Loève transform. This approach appears thus as an efficient alternative to the general error back-propagation algorithm commonly used for training multilayer perceptrons. Moreover, it also gives a clear interpretation of the rôle of the different parameters.

Mathematics

The application of delta modulation to EEG waveforms for database reduction and real-time signal processing.

The large volume of digital data and the demanding processing task involved in electroencephalogram (EEG) analysis place stringent requirements on computer resources in terms of data transfer, computation speed, and temporary or permanent storage. The reduction of the database to a manageable size is therefore necessary for economical use of transmission channels and the storage media. The two criteria, waveform reproducibility and processing applications, must be analyzed and optimized in terms of signal-to-noise ratio (SNR) using the various factors affecting the coding. This analysis and optimization can become cumbersome, and a specialized workstation has been developed specifically for analysis of digital coding. Our interest in data compression stems from the study of the feasibility of predicting pilots' acceleration (Gz) tolerance during flight by processing both their uncoded and coded EEG.

Aerospace Medicine

Management and clinical utilization of computed tomography, magnetic resonance imaging, and angiography in Hokkaido University Hospital picture archiving and communication system.

We made a preliminary assessment of the Hokkaido University picture archiving and communication system (HU-PACS). Data access time from either imaging machines or data base to workstations was 1.5 minutes, which is great benefit for data communication in routine examinations. Image quality of the work station was estimated in terms of brain computed tomography (CT) and digitized cerebral angiograms. Cerebral infarction was definitely observed on the cathode-ray tube (CRT) monitor of the work station. Although the picture quality of CRT was acceptable, we had to manipulate window level and width for CRT diagnosis of cerebral angiography. Data compression was routinely used without significant degradation of those image quality. Nevertheless, further improvement of maneuverability of the workstation should be considered.

Angiography, Digital Subtraction

High pressure volumetric measurements in dipalmitoylphosphatidylcholine bilayers.

The one previously reported high pressure volumetric experiment on a phospholipid bilayer investigated a region of pressure between 0 and 25 MPa and obtained isothermal compressibility values for the liquid crystal and intermediate phases which differed by more than a factor of ten. We report new volumetric measurements around the main transition in dipalmitoylphosphatidylcholine (DPPC) from 0 to 100 MPa. The isothermal compressibility data for the two phases are of the same order of magnitude, and the experimentally determined coexistence curve, specific volume dependence, and volume discontinuity values are compared with the predictions of the phenomenological theory according to Sugar and Tarjan ((1982) Sov. Phys. Crystallogr. 27, 4-5). Significant discrepancies between this theory and experiment are found. Finally, the data indicate that steric interactions play a more dominant role in the main transition of phospholipid bilayers than in transitions in most thermotropic liquid crystals.

Atmospheric Pressure