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PubMed2004

Evaluation of early Archean volcaniclastic and volcanic flow rocks as possible sites for carbonaceous fossil microbes.

Sedimentary rocks have traditionally been the focus of the search for Archean microfossils; the Earth's oldest fossil bacteria are associated with carbonaceous matter in sedimentary cherts in greenstone belts in the eastern Pilbara block of Western Australia and Barberton greenstone belt of South Africa. Reports of possible fossils in a martian meteorite composed of igneous rock and the discovery of modern bacteria associated with basalts have stimulated a new look at Archean volcanic rocks as possible sites for fossil microbes. This study examines silicified volcaniclastic rocks, near-surface altered volcanic flow rocks, and associated stromatolite- like structures from the Archean Barberton greenstone belt to evaluate their potential for the preservation of carbonaceous fossils. Detrital carbonaceous particles are widely admixed with current-deposited debris. Carbonaceous matter is also present in altered volcanic flow rocks as sparse particles in silica veins that appear to be fed by overlying carbonaceous chert layers. Neither microfossils nor mat-like material was identified in the altered volcanic rocks or adjacent stromatolite-like structures. Ancient volcanic flow and volcaniclastic rocks are not promising sites for carbonaceous fossil preservation.

Bacteria↗

PubMed2005

The quality of the fossil record of Mesozoic birds.

The Mesozoic fossil record has proved critical for understanding the early evolution and subsequent radiation of birds. Little is known, however, about its relative completeness: just how 'good' is the fossil record of birds from the Mesozoic? This question has come to prominence recently in the debate over differences in estimated dates of origin of major clades of birds from molecular and palaeontological data. Using a dataset comprising all known fossil taxa, we present analyses that go some way towards answering this question. Whereas avian diversity remains poorly represented in the Mesozoic, many relatively complete bird specimens have been discovered. New taxa have been added to the phylogenetic tree of basal birds, but its overall shape remains constant, suggesting that the broad outlines of early avian evolution are consistently represented: no stage in the Mesozoic is characterized by an overabundance of scrappy fossils compared with more complete specimens. Examples of Neornithes (modern orders) are known from later stages in the Cretaceous, but their fossils are rarer and scrappier than those of basal bird groups, which we suggest is a biological, rather than a geological, signal.

Animals↗

PubMed1981

Immunological reactions from fossil material.

Genetic relations among living species can be deduced from biochemical as well as morphological similarities, but our understanding of fossil species has depended entirely on their morphology. Residual proteins in fossils might provide genetic information, but their small quantity and chemical alterations due to time and environmental agents have prevented the obtaining of species-specific analysis. This report describes a radioimmunoassay capable of detecting extremely small amounts of fossil proteins, such as collagen and albumin. Species-specific proteins have been identified in a frozen Siberian mammoth, a Pleistocene bison, and a series of human fossils that includes Neanderthal, Homo erectus and Australopithecus robustus. This technique promises to provide molecular data on the genetic affinities of fossil and living species.

Albumins↗

PubMed2005

Biomineralization of endolithic microbes in rocks from the McMurdo Dry Valleys of Antarctica: implications for microbial fossil formation and their detection.

In some zones of Antarctica's cold and dry desert, the extinction of cryptoendolithic microorganisms leaves behind inorganic traces of microbial life. In this paper, we examine the transition from live microorganisms, through their decay, to microbial fossils using in situ microscopy (transmission electron microscopy, scanning electron microscopy in back-scattered electron mode) and microanalytical (energy dispersive X-ray spectroscopy) techniques. Our results demonstrate that, after their death, endolithic microorganisms inhabiting Commonwealth Glacier sandstone from the Antarctica McMurdo Dry Valleys become mineralized. In some cases, epicellular deposition of minerals and/or simply filling up of empty moulds by minerals leads to the formation of cell-shaped structures that may be considered biomarkers. The continuous deposition of allochthonous clay minerals and sulfate-rich salts fills the sandstone pores. This process can give rise to microbial fossils with distinguishable cell wall structures. Often, fossilized cell interiors were of a different chemical composition to the mineralized cell walls. We propose that the microbial fossil formation observed was induced by mineral precipitation resulting from inorganic processes occurring after the death of cryptoendolithic microorganisms. Nevertheless, it must have been the organic template that provoked the diffusion of mineral elements and gave rise to their characteristic distribution pattern inside the fossilized cells.

Antarctic Regions↗

PubMed2001

High-resolution electron microscopy of the crystallites of fossil enamels obtained from various geological ages.

To elucidate the stability of the central dark line (CDL) in biologically induced hydroxyapatite crystals, we examined the diagenetic changes on the microstructures of the crystallites during the course of fossilization. Using transmission electron microscopy, we investigated the enamel crystallites of fossil animals of various geological ages ranging from Pleistocene to Cretaceous. Electron micrographs indicated that the microstructures and lattice images of each crystallite in fossil enamels were well-preserved regardless of the thickness of the enamel layer, and the presence of CDLs in fossil enamel crystals was also confirmed. The results indicated that the microstructure of hydroxyapatite crystals containing lattice images of CDLs appear stable during long geological periods. In addition, we conclude that the existence of lattice images in apatite with CDLs may be an indicator for the assessment of the evolution of dental enamel from fossil remains.

Animals↗

PubMed1996

DNA sequence from a fossil pollen of Abies spp. from Pleistocene peat.

DNA was amplified from individual fossil pollen grains of Abies spp. (Pinaceae), which have been detected from Pleistocene peaty deposits (at least 150,000 years old). To identify the species of the fossil pollen by DNA analysis, the region indicating the species-specific sequence was searched among extant Abies species and the spacer region between rrn5 and trnR in chloroplast DNA was sequenced for four grains of the fossil pollen. Three pollen samples produced the same sequence as extant Abies species. The sequence for the remaining sample differed from that of extant Abies by one substitution. This study showed not only a successful DNA analysis from a single grain of fossil pollen but also a new method to identify the species of fossil pollen for the pollen analysis field.

Base Sequence↗

PubMed1982

[Determination of uranium contents in fossil bones using fission track method--new counting method of fission tracks with high density].

Determination of the average uranium contents in several fossil bones was carried out using an improved fission track method. Four standard samples were prepared from silica-gel powder containing known amounts of natural uranium. The powdered fossil bones was fixed on a muscovite detector as well as the standard samples and followed by the neutron irradiation. After cooling, the muscovites were chemically etched with HF-solution to develop the fission tracks. By using standard samples, it was found that a reliable track counting is impossible through the transmission optical microscope in the region over track density of 5 X 10(5) cm-2 because of overlap of fission tracks in each other. In order to improve this situation bearing most of the present muscovites, the observation using the reflection microscope was applied after coating the muscovite surface with the vacuum-evaporated gold film and verified to be extremely efficient to the counting of high track density up to 5 X 10(7) cm-2, which could be no longer to distinguish intrinsic tracks through ordinary microscope. All of the fossil samples were subjected to the track counting through the reflection microscope and after correcting the estimated difference of track ranges between the standard and fossil bone samples the experimental uranium contents were evaluated. The uranium contents in the fossil bones were in the range of 30-460 ppm.

Animals↗

PubMed2001

Glutoxylon Chowdhury (Anacardiaceae): the first record of fossil wood from Bangladesh.

This paper documents the first record of silicified fossil wood from a previously undescribed wood-rich horizon in the Sitakund Anticline, Eastern Bangladesh. The outcrop is composed of cross-stratified, fine-medium grained sandstones with bidirectional cross stratification indicative of a tidal environment, deposited ca. 5-5.2 million years before present (Miocene/Pliocene). The wood is characterised by large solitary vessels with alternate intervascular pits, banded parenchyma, uniseriate rays, and multiseriate rays with one radial canal per ray. This character combination closely resembles the wood of extant Gluta L. of the Anacardiaceae. This specimen has been assigned to the organ genus Glutoxylon Chowdhury erected for fossil woods with anatomical similarity to Gluta (including Melanorrhoea Wall.). The excellent preservation of this mature wood specimen illustrates the potential for using fossil wood from the Sitakund locality for palaeoecological studies in terms of biodiversity and adaptational response to climate change. Moreover such investigations of fossil woods from Bangladesh will compliment studies undertaken on fossil plants in other parts of Central and Southeastern Asia which will further the understanding of plant migration routes between India and Southeast Asia during the Tertiary.

Journal Article↗

PubMed2004

Patterns of tooth crown size and shape variation in great apes and humans and species recognition in the hominid fossil record.

It has been suggested that patterns of craniodental variation in living hominids (Gorilla, Homo, Pan, and Pongo) may be useful for evaluating variation in fossil hominid assemblages. Using this approach, a fossil sample exhibiting a pattern of variation that deviates from one shared among living taxa would be regarded as taxonomically heterogeneous. Here we examine patterns of tooth crown size and shape variation in great apes and humans to determine 1) if these taxa share a pattern of dental variation, and 2) if such a pattern can reliably discriminate between samples that contain single species and those that contain multiple species. We use parametric and nonparametric correlation methods to establish the degree of pattern similarity among taxa, and randomization tests to assess their statistical significance. The results of this study show that extant hominids do not share a pattern of dental size variation, and thus these taxa cannot be used to generate expectations for patterns of size variation in fossil hominid species. The hominines (Gorilla, Homo, and Pan) do share a pattern of shape variation in the mandibular dentition; however, Pongo is distinct, and thus it is unclear which, if either, pattern should be expected in fossil hominids. Moreover, in this case, most combined-species samples exhibit patterns of shape variation that are similar to those for single hominine species samples. Thus, although a common pattern of shape variation is present in the mandibular dentition, it is not useful for recognizing taxonomically mixed paleontological samples.

Animals↗

PubMed1982

High-resolution computed tomography for the comparative study of fossil and extant bone.

Special methods have been developed to use computed tomography (CT) for 3-dimensional imaging of both fossil and extant bones. Most commercial CT scanners cannot display the internal structure of fossils because the very high density is beyond the upper limits of the normal CT number scale (Hounsfield scale) of the scanners. X-ray projections from CT scans of fossils were modified by scaling the data to provide an expanded CT number scale, allowing the internal structure of highly fossilized objects to be visualized. These images were compared with state-of-the-art, high-resolution CT images of extant bone. Special image reformatting software was used to provide qualitative and quantitative 3-dimensional imaging. The recent rapid advances in CT technology have made this imaging modality the procedure of choice in much of diagnostic radiology. Use of this tool in paleoanthropology has been limited in the past by restricted access to scanners. However, new developments in CT will make this technique available to many researchers in the near future.

Animals↗

PubMed1989

New hominid fossils from the Swartkrans formation (1979-1986 excavations): postcranial specimens.

New postcranial fossils of Paranthropus robustus and Homo cf. erectus were recovered from Swartkrans from 1979 through 1986. These fossils are from Members 1, 2, and 3. The new fossils are described here along with their morphological affinities. Fossils that are assigned to Paranthropus indicate that the South African "robust" australopithecines engaged in tool behavior and were essentially terrestrial bipeds at around 1.8 Myr BP. The manual dexterity and bipedal locomotion of Paranthropus may have equaled that of Homo habilis in East Africa at approximately the same time.

Africa, Southern↗

PubMed1990

Femur/stature ratio and estimates of stature in mid- and late-Pleistocene fossil hominids.

In previous limited investigations of the human femur/stature ratio we (Feldesman and Lundy: Journal of Human Evolution 17:583-596, 1988; Feldesman et al.: American Journal of Physical Anthropology 79:219-220, 1989) have shown it to be remarkably stable across ethnic and gender boundaries. In this study we evaluate the femur/stature ratio in 51 different "populations" of contemporary humans (n = 13,149) sampled from all over the world. We find that the mean ratio of femur length to stature in these populations is 26.74%, with a very restricted range of variation. When we compare mean femur/stature ratios of males and females, there are no statistically significant differences. ANOVA performed on a naive grouping of samples into "whites," "blacks," and "Asians" indicates that there are significant racial differences (P less than 0.001). When we subject these groups to Tukey's HSD procedure (a post-hoc test), we find that "blacks" are responsible for the significant ANOVA, being significantly (P less than 0.005) different from the other ethnic groups. "Whites" and "Asians" are not significantly different (P = 0.067) under the conditions of this analysis, although all these racial comparisons may be suspect given the small sample sizes. We tested the efficacy of the ratio in three situations: predicting stature of repatriated white Vietnam veterans; predicting stature in a random sample of South African blacks (of known stature), and predicting the stature of a single Akka pygmy. In the first and third cases, the femur/stature ratio does better than the traditionally recommended regression equation, while in the second case the predictions from the femur/stature ratio are less accurate than from the appropriate regression equation. These results encouraged us to apply this ratio to mid- and late-Pleistocene fossil hominids, where the choice of reference population for stature estimates continues to trouble workers. We estimated stature for a sizeable number of Homo erectus (HE), early Neanderthal (EN), Near Eastern Neanderthal (NEN), and early anatomically modern Homo sapiens (EAMHS) by using the simple relationship: stature (cm) = femur length (cm) * 100/26.74. Our results show that HE fossils are slightly taller on average than either EN or NEN samples, which do not differ significantly in stature, while EAMHS fossils are significantly taller than all three earlier groups. While these results are not surprising, our stature estimates for these fossils differ from currently published estimates based on sample-specific regression-based formulae.(ABSTRACT TRUNCATED AT 400 WORDS)

Analysis of Variance↗

PubMed1994

New fossil cercopithecid remains from the Humpata Plateau, southern Angola.

The aim of the present investigation was to describe and identify the well-preserved cranial remains of a fossil cercopithecid recently recovered from sites on the Humpata Plateau in southern Angola. In the past, papionin fossils recovered from the Angolan site of Tchiua (Leba) have been referred to various taxa, including Dinopithecus ingens, Parapapio sp., and Papio (Dinopithecus) quadratirostris. Comparison of the new Angolan papionin cranial remains with those previously described from the Humpata Plateau and a large range of living and fossil Papionini revealed that the range of metrical and morphological variation present in the Humpata papionin sample was consistent with that found in a single extant papionin species. The Humpata cranial remains bear the largest number of similarities to Theropithecus baringensis R. Leakey, 1969, and it is to this species that the remains are hereby referred. This assignment is based on a suite of 11 shared attributes of the Humpata papionin fossils and the type specimen of T. baringensis, KNM BC2, which include: large molar teeth of relatively low relief with pinched cusps and with a prominent distal fovea on M3; a small, low cranial vault with little mid-parietal expansion; a bow-shaped supraorbital torus; trapezoidal, inferiorly tapering orbits; a functional complex related to the presence of a large and vertically oriented anterior temporalis muscle; a large infratemporal fossa with an anteromedially oriented posterior border; a long muzzle with a steep interorbital drop, shallow incisive arc, flattened dorsum, and rounded maxillary ridges; nasal bones that extend across the breadth of the posterior margin of the nasal aperture and then taper markedly as they approach nasion; prominent, inferiorly divergent mental ridges; and relatively shallow mandibular fossae that are long, elliptical in shape, and extend to the level of the M3. The results of the current study suggest that T. baringensis (now including the Humpata papionin sample) and T. quadratirostris occupy a position at the base of the Theropithecus radiation very close to the origin of Dinopithecus ingens and Gorgopithecus major. The species of the genera Theropithecus (including its Humpata representatives) and Papio, along with D. ingens and G. major, form a cluster of taxa that are more closely related to each other than they are to other extant or extinct papionins.

Age Factors↗

PubMed2007

Inferring Plio-Pleistocene southern African biochronology from facial affinities in Parapapio and other fossil papionins.

Buried in the same South African cave deposits as Australopithecus, fossil papionins have been referred to Parapapio (Pp. whitei, Pp. broomi, Pp. jonesi, Pp. antiquus), Papio (P. izodi, P. angusticeps, P. h. robinsoni), Theropithecus (e.g., T. darti), Gorgopithecus, or Dinopithecus on the basis of postcanine tooth size and descriptive morphology of the muzzle. The morphological patterns of variation that these papionins demonstrate can help to place the Australopithecus fossils into a biochronological context and provide valuable information for reconstructing regional Plio-Pleistocene turnover. To document these patterns of variation across fossil-bearing sites, we explore morphometric affinities within Parapapio, and between Parapapio and other Plio-Pleistocene taxa (Dinopithecus ingens, Papio angusticeps, Papio izodi, and Theropithecus darti) by analyzing a sample of interlandmark distances derived from 3-D coordinate data of the most complete fossil papionin specimens available. Bivariate and multivariate analyses show that Pp. whitei exhibits as much variation between sites and between individuals as Pp. broomi and Pp. whitei combined. Diversity in Parapapio at Makapansgat and Sterkfontein may suggest substantial time depth to the caves. Theropithecus darti, Dinopithecus ingens, Papio angusticeps, Pp. whitei from Bolt's Farm (BF 43), and Pp. jonesi from Sterkfontein (STS 565) differ considerably from one another. Other Parapapio specimens across sites form a separate cluster with P. izodi from Taung, suggesting a Pliocene age for this site.

Africa, Southern↗

PubMed2002

Missing Omo L338y-6 occipital-marginal sinus drainage pattern: ground sectioning, computer tomography scanning, and the original fossil fail to show it.

The Omo L338y-6 occipital region has been recently studied by White and Falk (1999), who claim that it shows a readily identifiable enlarged left occipital-marginal sinus (O/M). These observations are contrary to the direct observations of previous investigators (Rak and Howell, 1978; Kimbel, 1984; Holloway, 1981; Holloway, 1988). White and Falk (1999) further argue that the presence of this enlarged O/M strongly suggests that the Omo L338y-6 hominid was indeed a "robust" Australopithecus. We used direct sectioning and CT scanning to analyze magnified sections of a high-quality first-generation cast of the newly cleaned original fossil. These methods fail to show any evidence of a morphological landmark that can be interpreted as an enlarged O/M, either as an eminence or a sulcus. In contrast, the same techniques used with both SK 1585 and OH5 ("robust" Australopithecus with an enlarged O/M) show extremely visible and palpable enlarged O/M's. Examination of the original Omo fossil confirms that it lacks an O/M. This evidence clearly shows that an enlarged O/M cannot be identified on either the original fossil or a first-generation cast, although this does not rule out the possibility that the Omo L338y-6 hominid was a "robust" Australopithecus. We believe that the differences between observers regarding this feature are most probably due to displacement caused by a crack and the different source materials employed, i.e., the difference between a first-generation cast of the original fossil and a third- or fourth-generation cast of the endocast made two decades ago.

Animals↗

PubMed2007

Structural characterization of modern and fossilized charcoal produced in natural fires as determined by using electron energy loss spectroscopy.

Charcoal produced in natural fires is widespread, but surprisingly little is known about its structure and stability. TEM and electron energy loss spectroscopy (EELS) were used to characterize the organized graphite-like microcrystallites and amorphous nonorganized phases of modern charcoal that had been produced in natural fires. In addition, a semiordered structure was identified in two modern charcoal samples. Fossilized charcoal contains fewer graphite-like microcrystallites than modern samples. EELS spectra confirmed that the dominant structure in fossilized charcoal is amorphous carbon. EELS measurements also revealed that only the nonorganized phase contains oxygen, which indicates that the degradation of the fossilized charcoal structure occurs mainly through oxidation processes. The few graphite-like microcrystallites found in fossilized charcoal were composed of onion-like structures that are probably less prone to oxidation owing to their rounded structures.

Charcoal↗

PubMed1992

Molecules, fossils, and the origin of tetrapods.

Since the discovery of the coelacanth, Latimeria chalumnae, more than 50 years ago, paleontologists and comparative morphologists have debated whether coelacanths or lungfishes, two groups of lobe-finned fishes, are the closest living relatives of land vertebrates (Tetrapoda). Previously, Meyer and Wilson (1990) determined partial DNA sequences from two conservative mitochondrial genes and found support for a close relationship of lungfishes to tetrapods. We present additional DNA sequences from the 12S rRNA mitochondrial gene for three species of the two lineages of lungfishes that were not represented in the first study: Protopterus annectens and Protopterus aethiopicus from Africa and Neoceratodus forsteri (kindly provided by B. Hedges and L. Maxson) from Australia. This extended data set tends to group the two lepidosirenid lungfish lineages (Lepidosiren and Protopterus) with Neoceratodus as their sister group. All lungfishes seem to be more closely related to tetrapods than the coelacanth is. This result appears to rule out the possibility that the coelacanth lineage gave rise to land vertebrates. The common ancestor of lungfishes and tetrapods might have possessed multiple morphological traits that are shared by lungfishes and tetrapods [Meyer and Wilson (1990) listed 14 such traits]. Those traits that seem to link Latimeria and tetrapods are arguably due to convergent evolution or reversals and not to common descent. In this way, the molecular tree facilitates an evolutionary interpretation of the morphological differences among the living forms. We recommended that the extinct groups of lobe-finned fishes be placed onto the molecular tree that has lungfishes and not the coelacanth more closely related to tetrapods. The placement of fossils would help to further interpret the sequence of morphological events and innovations associated with the origin of tetrapods but appears to be problematic because the quality of fossils is not always high enough, and differences among paleontologists in the interpretation of the fossils have stood in the way of a consensus opinion for the branching order among lobefinned fishes. Marshall and Schultze (1992) criticized the morphological analysis presented by Meyer and Wilson (1990) and suggest that 13 of the 14 morphological traits that support the sister group relationship of lungfishes and tetrapods are not shared derived characters. Here we present further alternative viewpoints to the ones of Marshall and Schultze (1992) from the paleontological literature. We argue that all available information (paleontological, neontological, and molecular data) and rigorous cladistic methodology should be used when relating fossils and extant taxa in a phylogenetic framework.

Animals↗

PubMed1992

Adhesive grass spikelet with mammalian hair in Dominican amber: first fossil evidence of epizoochory.

Discovery of a female spikelet of the grass genus Pharus (Gramineae: Bambusoideae: Phareae) in association with mammalian hair in Dominican Republic amber provides the first fossil evidence of epizoochory. Hooked macrohairs on the lemma of the spikelet show that morphological modifications in grasses for dispersal by attachment to the surface of animals were present in the Late Eocene. The fossil also represents 1) the second-oldest undoubted macrofossil record of the Gramineae, 2) the earliest record of a fossil grass that can be assigned to an extant genus, 3) the earliest undoubted record of a member of the bamboo subfamily and 4) the only known fossil of Pharus.

Animals↗