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PubMed2005

Imaging the switching behavior of superparamagnetic nanoislands by spin-polarized scanning tunneling microscopy.

In the past, spin-polarized scanning tunneling microscopy (SP-STM) was mainly applied to static domain configurations that do not vary in time. Here, we show that SP-STM may also be used to image the thermal switching behavior of superparamagnetic nanoislands. Special experimental care has to be taken in order to allow the unambiguous interpretation of the obtained data. Most important, the imaging of superparamagnetic particles requires the use of antiferromagnetic probe tips as the stray field of ferromagnetic tips may modify the sample's intrinsic switching behavior. Our results show that Fe monolayer islands on Mo(110) switch thermally when their area is smaller than 40 nm2. Dipolar coupling between adjacent islands is observed at small inter-particle distance. A pronounced shape dependence is found that confirms existing but yet unverified analytical predictions. The first experiments performed on Fe double-layer islands on W(001) also show thermal switching events, but no clear-cut size dependence is found.

Anisotropy↗
PubMed2006

Adsorption and in situ scanning tunneling microscopy of cysteine on Au(111): Structure, energy, and tunneling contrasts.

The amino acid L-cysteine (Cys) adsorbs in highly ordered (3 square root of 3 x 6) R30 degrees lattices on Au(111) electrodes from 50 mM ammonium acetate, pH 4.6. We provide new high-resolution in situ scanning tunneling microscopy (STM) data for the L-Cys adlayer. The data substantiate previous data with higher resolution, now at the submolecular level, where each L-Cys molecule shows a bilobed feature. The high image resolution has warranted a quantum chemical computational effort. The present work offers a density functional study of the geometry optimized adsorption of four L-Cys forms-the molecule, the anion, the neutral radical, and its zwitterion adsorbed a-top-at the bridge and at the threefold hollow site of a planar Au(111) Au12 cluster. This model is crude but enables the inclusion of other effects, particularly the tungsten tip represented as a single or small cluster of W-atoms, and the solvation of the L-Cys surface cluster. The computational data are recast as constant current-height profiles as the most common in situ STM mode. The computations show that the approximately neutral radical, with the carboxyl group pointing toward and the amino group pointing away from the surface, gives the most stable adsorption, with little difference between the a-top and threefold sites. Attractive dipolar interactions screened by a dielectric medium stabilize around a cluster size of six L-Cys entities, as observed experimentally. The computed STM images are different for the different L-Cys forms. Both lateral and vertical dimensions of the radical accord with the observed dimensions, while those of the molecule and anion are significantly more extended. A-top L-Cys radical adsorption further gives a bilobed height profile resembling the observed images, with comparable contributions from sulfur and the amino group. L-Cys radical a-top adsorption therefore emerges as the best representation of L-Cys adsorption on Au(111).

Adsorption↗
PubMed2005

Recent advances in atomic-scale spin-polarized scanning tunneling microscopy.

The Mn3N2 (010) surface has been studied using spin-polarized scanning tunneling microscopy at the atomic scale. The principle objective of this work is to elucidate the properties and potential of this technique to measure atomic-scale magnetic structures. The experimental approach involves the use of a combined molecular beam epitaxy/scanning tunneling microscopy system that allows the study of atomically clean magnetic surfaces. Several key findings have been obtained. First, both magnetic and non-magnetic atomic-scale information has been obtained in a single spin-polarized image. Magnetic modulation of the height profile having an antiferromagnetic super-period of c = 12.14 A (6 atomic rows) together with a non-magnetic superstructure having a period of c/2 = 6.07 A (3 atomic rows) was observed. Methods of separation of magnetic and non-magnetic profiles are presented. Second, bias voltage-dependent spin-polarized images show a reversal of the magnetic modulation at a particular voltage. This reversal is clearly due to a change in the sign of the magnetic term in the tunnel current. Since this term depends on both the tip's as well as the sample's magnetic local density of states, the reversal can be caused by either the sample or the tip. Third, the shape of the line profile was found to vary with the bias voltage, which is related to the energy-dependent spin contribution from the 2 chemically inequivalent Mn sites on the surface. Overall, the results shown here expand the application of the method of spin-polarized scanning tunneling microscopy to measure atomic-scale magnetic structures.

Algorithms↗
PubMed1993

Structure of hydrated oligonucleotides studied by in situ scanning tunneling microscopy.

We have used the scanning tunneling microscope (STM) to image several synthetic oligonucleotides adsorbed onto a positively charged Au(111) electrode. The molecules were deposited and imaged in aqueous electrolyte under potential control, a procedure that eliminated the problem of the substrate artifacts that had limited some previous STM studies. Experiments were carried out with two types of single-stranded molecules (11 and 20 bases long) and three types of double-stranded molecules (20 and 61 base pairs and 31 bases with 25 bases paired and 6-base "sticky" ends). The molecules lie along symmetry directions on the reconstructed (23 x square root of 3) gold surface, and length measurements indicate that they adopt simple base-stacked structures. The base stacking distances are, within experimental uncertainty, equal to the 0.33 nm measured for polymeric aggregates of stacked purines by direct imaging in identical conditions. The images show features consistent with helical structures. Double helices have a major-groove periodicity that is consistent with a 36 degrees twist. The single helices appear to be more tightly twisted. A simple tunneling model of STM contrast generates good agreement between measured and calculated images.

Base Sequence↗
PubMed2003

Molecular electronics on silicon: an ultrahigh vacuum scanning tunneling microscopy study.

An ultrahigh vacuum scanning tunneling microscope (STM) was employed as a tool to characterize two distinct molecular electronic strategies on the Si(100) surface. Initially, the self-directed growth of one-dimensional styrene molecular chains on hydrogen-passivated Si(100) was investigated. High-resolution empty states imaging of these styrene nanostructures confirms alignment of phenyl groups along the chain. However, attempts at STM charge transport measurements were limited by tip induced desorption of styrene molecules. Consequently, an alternative oxygen radical chemistry was also investigated. In particular, the chemical adsorption of 2,2,6,6-tetramethyl-1-piperidinyloxy (TEMPO) onto clean Si(100) leads to the formation of an exceptionally stable silicon-oxygen bond that can withstand high bias charge transport measurements up to +/- 5 volts. Direct charge transport measurements through individual TEMPO molecules on degenerately n-type doped Si(100) reveal room temperature negative differential resistance behavior for negative sample biases exceeding - 3 volts.

Crystallography↗
PubMed2004

Scanning tunnelling microscopy of carbon nanotubes.

This paper briefly reviews how scanning tunnelling microscopy (STM) and spectroscopy (STS) are used to analyse the atomic structure and the electronic properties of individual single-wall carbon nanotubes. In this area, the progress accomplished over the past several years has been spectacular. As this paper demonstrates, all the effects predicted by theory have been verified experimentally. Geometrical and electronic effects specific to carbon nanotubes are illustrated by analysing a series of STM images and STS spectra computed using a tight-binding theory. The simulations include a catalogue of images of 27 single-wall nanotubes, Stone-Wales defects in semiconducting nanotubes, and a symmetric Y-junction.

Biocompatible Materials↗
PubMed1997

Hydration scanning tunneling microscopy of DNA and a bacterial surface protein.

Hydration scanning tunneling microscopy is based on the electrical conductivity of molecularly thin water layers which adsorb to the sample surfaces in a humid atmosphere. It allows reliable imaging of biological specimens and even insulators, provided they are hydrophilic. Here, we present results obtained with linearized plasmid DNA on mica and a bacterial surface protein layer (the HPI layer). A width of 3 nm was measured for the DNA molecules and a quasi-periodic structure along the molecules with a repeat distance of about 5 nm was observed. We show that-depending on the tunneling voltage-there are two different imaging modes for the DNA samples: at higher voltages, real tunneling or field emission is responsible for the charge transfer between tip and sample. In contrast, at lower voltages we found indications of a water meniscus between tip and surface. The HPI layer, however, seems to be imaged at most voltages without a water meniscus.

Aluminum Silicates↗
PubMed1992

Scanning tunneling microscopy imaging of Torpedo acetylcholine receptor.

The synaptic surface of the acetylcholine receptor in membranes from Torpedo californica electric organ has been imaged by scanning tunneling microscopy. The molecule appears pentameric, with one major and four minor protrusions rising above the surface, and these protrusions encompass a large central cavity. The outer diameter of the molecule is 69 +/- 10 A, while the diameter of the cavity, measured at the widest complete contour line delimiting the opening, is 26 +/- 7 A. The images and dimensions obtained are consistent with the structure determined from hybrid density maps obtained by x-ray diffraction and electron microscopy. Thus, scanning tunneling microscopy can be used to obtain overall dimensions and low-resolution structural features of the surface of a membrane-embedded protein.

Animals↗
PubMed2003

Scanning tunnelling microscopy imaging of [3 x 3] Mn nonanuclear grids.

The scanning tunnelling microscopy imaging of [3 x 3] Mn(II) nonanuclear grids on gold substrates is described. Self-assembled behaviour is observed at both high and low coverage, with submolecular resolution of individual molecules displayed at low deposition concentrations. The importance of proper image processing techniques is demonstrated in resolving the layer structure at high coverage.

Gold↗
PubMed1991

Scanning tunneling microscopy imaging of synthetic oligonucleotides and oligonucleotide-metal complexes.

Scanning tunneling microscopy (STM) has been used to image 12- and 24-base pair (bp) synthetic oligonucleotide duplexes alone or with intercalatively-bound metal complexes with submolecular resolution. The sizes of the 12- and 24-bp oligonucleotides determined from STM images are close to expected values, and images of isolated duplexes resolve the two nucleotide strands of these molecules. The variation of duplex size in our images demonstrates that these features are not due to surface artifacts. In addition, images of the 12-bp duplex in the presence of bis(9,10-phenanthrenequinone diimine)(2,2'-bipyridyl)rhodium(III) exhibit a new structural feature at 14 +/- 2 A from the duplex ends. This new feature corresponds well to the metal binding site determined from DNA cleavage and molecular modeling studies. These results indicate that STM can be used to image directly transition metal complexes bound to DNA, and thus suggest that metal complexes bound specifically to biological molecules could serve as labels in STM structural studies.

2,2'-Dipyridyl↗
PubMed2006

Significance of local density of states in the scanning tunneling microscopy imaging of alkanethiol self-assembled monolayers.

A systematic scanning tunneling microscopy (STM) study of alkanethiol self-assembled monolayers (SAMs) is presented as a function of the bias voltage, tunneling current, and tip-termini separation. Stable and etch-pit free SAMs of close-packed undecanethiol/Au(111) were obtained after annealing in ultrahigh vacuum. STM revealed two distinct c(4x2) structures with four nonequivalent molecules per unit cell. For both structures, reversible contrast variations occur upon systematically tuning the bias voltage, the current, and the tip-termini distance. These contrast transitions originate from probing the corresponding local density of states (LDOS) of each molecule and not from the reorientation of the alkanethiol chains. The STM contrast is particularly sensitive to the tip-termini separation in the range of 0.5-2.5 A, reflecting the distance-dependence of LDOS. At a fixed tip elevation, the STM contrast is less sensitive to changes in bias within 0.1-1.2 V. For the first time, we demonstrate that LDOS may override the physical height variations in the STM topographic contrast for alkanethiol SAM systems.

Alkanes↗
PubMed2006

Adlayers of Sb irreversibly adsorbed on Pt(111): an electrochemical scanning tunneling microscopy study.

This work presents an electrochemical scanning tunneling microscopy study of Sb irreversibly adsorbed on Pt(111) at various potentials. At an open circuit potential (0.46 V vs a Ag/AgCl electrode), well-ordered structures of SbO+ were found: four (4 x 3)-3SbO+ structures and one (2 square root(3) x 2 square root(3))R30 degrees-3SbO+ structure. In addition, several unidentifiable transient structures of SbO+ were observed, and their relations to the well-ordered structures of (4 x 3) and (2 square root(3) x 2 square root(3))R30 degrees, regarding structural evolution, were proposed. At a reducing potential (0 V), the Pt(111) surface was covered with irreversibly adsorbed Sb which consisted of three different domains: protruded domain, domain of uniaxially incommensurate (square root(3) x square root(2))-Sb, and domain of bare (1 x 1) Pt(111). During oxidation of elemental Sb at 0.30 V, the Sb domains of the (square root(3) x square root(2)) structure were oxidized, while the protruded domains were not oxidized. After underpotential deposition of additional Sb onto the Pt(111) covered with irreversibly adsorbed Sb, the whole surface was filled with the Sb domains where each Sb atoms were separated by the square root(2a) distance (a = one Pt-Pt distance, 0.277 nm). The observed electrochemical inactivity below 0.3 V was discussed in terms of the protruded domain of a presumable incommensurate (square root(2) x square root(2)) structure.

Journal Article↗
PubMed2000

Visualizing interfacial structure at non-common-atom heterojunctions with cross-sectional scanning tunneling microscopy.

We describe how cross-sectional scanning tunneling microscopy (STM) may be used to image the interfacial bonding across the nearly lattice-matched, non-common-atom GaSb/InAs heterojunction with atomic-scale precision. The method, which takes advantage of the length difference between interfacial and bulk bonds, appears equally applicable to AlSb/InAs and suggests how one might recover the complete structure of either heterojunction from atomic-resolution STM data.

Journal Article↗
PubMed2002

Identification of the atomic structure of the fivefold surface of an icosahedral Al-Pd-Mn quasicrystal: helium diffraction and scanning tunneling microscopy studies.

High resolution He diffraction and scanning tunneling microscopy images of the fivefold surface of a single-grain i-AlPdMn quasicrystal are obtained showing an almost perfect quasicrystal order. Observed configurations can be identified within the framework of polyhedral models. The terrace terminations are found to be Al-rich planes and successions of step heights agree with distances between dense Al planes in the model. This shows the ability of recent 6D polyhedral models to describe real quasicrystalline atomic configurations.

Journal Article↗
PubMed1990

Scanning tunneling microscopy of planar biomembranes.

We combined planar membrane monolayer techniques with scanning tunneling microscopy (STM) to measure the thickness of metal-coated purple membrane (PM) isolated from Halobacterium halobium. Although the metal coating precluded obtaining high-resolution lateral information, it facilitated obtaining high-resolution vertical information. For example, the apparent mean thickness of planar PM and variations in thickness of enzyme-treated PM could be detected and quantified at sub-nanometer resolution.

Cell Membrane↗
PubMed1996

Imaging of liposomes by scanning tunneling microscopy.

In this study, unilamellar and multilamellar liposomes consisting of dipalmitoylphosphatidylcholine, cholesterol and dicetylphosphate were prepared. Scanning tunneling microscopy images of these liposomes on highly oriented pyrolytic graphite surfaces were obtained. It was observed that scanning tunnelling microscopy can be successfully used for high-resolution, three-dimensional structure analysis of liposomes under very mild conditions.

1,2-Dipalmitoylphosphatidylcholine↗