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Biomimetic lipid/polymer colorimetric membranes: molecular and cooperative properties.

Characterization of membranes and of biological processes occurring within membranes is essential for understanding fundamental cellular behavior. Here we present a detailed biophysical study of a recently developed colorimetric biomimetic membrane assembly constructed from physiological lipid molecules and conjugated polydiacetylene. Various analytical techniques have been applied to characterize the organization of the lipid components in the chromatic vesicles and their contributions to the observed blue-to-red color transitions. Experiments reveal that both the polymerized units as well as the lipids exhibit microscopic phases and form domains whose properties and bilayer organization are interdependent. These domains are interspersed within mixed lipid/polymer vesicles that have a size distribution different from those of aggregates of the individual molecular constituents. The finding that fluidity changes induced within the lipid domains are correlated with the chromatic transitions demonstrates that the colorimetric platform can be used to evaluate the effects of individual molecular components, such as negatively charged lipids and cholesterol, upon membrane fluidity and thermal stability.

Acetylene↗

Sensing, threading, orienting, and cutting polymers with rigid-rod pores.

This short review describes synthetic pores that are made from rigid-rod molecules and can bind oligo-and polymers such as polyacetylenes, p-oligophenyls, terpenoids, polypeptides, polysaccharides, and oligonucleotides. The spotlight is on recent breakthroughs to image the longtime elusive pore-polymer host-guest complexes as single giant pseudorotaxanes.

Membrane Transport Modulators↗

A semiconductive polymer film sensor for glucose.

The electrical conductivity of organic polymers such as polyacetylene and its derivatives can be varied over twelve orders of magnitude with small amounts (0-3%) of various dopants, such as iodine, bromine, and perchloric acid. Semiconductive polyacetylene film doped with iodine is sensitive to hydrogen peroxide, and can be used as a quantitative hydrogen peroxide sensor. A rapid, quantitative sensor for glucose, using the flavoprotein glucose oxidase, is described and introduces a novel electroactive material, polyacetylene, as the basis for a new biosensor. A significant increase in the sensitivity of this device has been obtained by mediating the doping reaction through lactoperoxidase and potassium iodide.

Acetylene↗

Polarons in DNA.

Many experiments have been done to determine how far and how freely holes can move along the stack of base pairs in DNA. The results of these experiments are usually described in terms of a parameter beta under the assumption that it describes an exponential decay with distance. The reported values range from beta < 0.2/A to beta > 1. 4/A. For the larger values of beta, the transport can be accounted for as single step superexchange-mediated hole transfer. To account for the smaller values, hopping models have been proposed, the simplest being nearest-neighbor hopping. This model assumes that, between hops, the hole is localized on a single base with no overlap to neighbors. Noting that an electron or hole added to a DNA stack, as to other essentially one-dimensional entities, should distort its structure to form a polaron, Schuster and coworkers [Henderson, P. T. , Jones, D., Hampikian, G., Kan, Y. & Schuster, G. B. (1999) Proc. Natl. Acad. Sci. USA 96, 8353-8358 and Ly, D., Sanii, L. & Schuster, G. B. (1999) J. Am. Chem. Soc. 121, 9400-9410] proposed that transport occurs by polaron hopping between sites having approximately equal energies as a result of overlap. A recent experimental determination by Wan et al. [Wan, C., Fiebig, T., Kelley, S. O., Treadway, C. R., Barton, J. K. & Zewail, A. H. (1999) Proc. Natl. Acad. Sci. USA 96, 6014-6019] of the time required for an injected hole on DNA to travel a known distance leads to a large value of the diffusion constant. From this constant, a mobility of 0. 2 cm(2)/V small middle dots was deduced, orders of magnitude larger than typical hopping mobilities. We suggest that this ultrafast transport is due to polaron drift, which has been shown to lead to similar mobilities in chains of conjugated polymers. Using a simple model for the polaron, similar to that used for conjugated polymers such as polyacetylene, we show that, for reasonable values of the parameters, an injected electron or hole can form a polaron on a DNA stack.

Base Pairing↗

Electrochemical characterization of polyacetylene ionomers and polyelectrolyte-mediated electrochemistry toward interfaces between dissimilarly doped conjugated polymers.

The electrochemical characterization of thin films of the ionically functionalized polyacetylene analogues poly(tetramethylammonium 2-cyclooctatetraenylethanesulfonate) (P(A)) and poly[(2-cyclooctatetraenylethyl)trimethylammonium trifluoromethanesulfonate] (P(C)) is reported along with an electrochemical approach to the fabrication of interfaces between dissimilarly doped conjugated polymers. Such interfaces are of interest because of the central role analogous interfaces based on silicon play in conventional microelectronics. The cationically functionalized P(C) can be both oxidatively (p-type) and reductively (n-type) doped to a conductive state, whereas the anionically functionalized P(A) can only be p-type doped. The voltammetry of P(C) displays relatively sharp waves with minimal history or relaxation effects. In contrast, the voltammetry of P(A) exhibits broader doping waves and a dependence on electrochemical history. The apparent formal potentials reported in 0.075 M Me4NBF4/CH3CN were -1.04 V versus SCE for the n-doping of P(C) and 0.40 and 0.30 V versus SCE for the p-doping of P(C) and P(A), respectively. These values depend on electrolyte concentration consistent with a Donnan potential due to the selective partitioning of ions between the electrolyte and polymer. Electrochemical quartz crystal microbalance data demonstrate that the p-type doping of P(A) and the n-type doping of P(C) proceed with the loss of ions from the polymer film and the formation of the internally compensated state. Voltammetry in tetrabutylammonium poly(styrenesulfonate)/CH3CN supporting electrolyte is also reported. It is demonstrated how a polyanion supporting electrolyte in concert with a conjugated ionomer can be used to control redox chemistry by governing the sign of ions available for charge compensation. In particular, we demonstrate the self-limiting oxidation of P(A) to inhibit deleterious overoxidation and prepare the precisely internally compensated state; the selective oxidation of P(A) over P(C), despite their similar apparent formal potentials; and the inhibition of the reoxidation of the n-doped form of P(C). The use of such polyelectrolyte-mediated electrochemistry in the fabrication of interfaces between dissimilarly doped conjugated polymers is discussed.

Journal Article↗

Titan haze: structure and properties of cyanoacetylene and cyanoacetylene-acetylene photopolymers.

The structure and morphological properties of polymers produced photochemically from the UV irradiation of cyanoacetylene and cyanoacetylene mixtures have been examined to evaluate their possible contribution to the haze layers found on Titan. A structural analysis of these polymers may contribute to our understanding of the data returned from the Huygens probe of the Cassini mission that will pass through the atmosphere of Titan in the year 2004. Infrared analysis, elemental analysis, and thermal methods (thermogravimetric analysis, thermolysis, pyrolysis) were used to examine structures of polycyanoacetylenes produced by irradiation of the gas phase HC3N at 185 and 254 nm. The resulting brown to black polymer, which exists as small particles, is believed to be a branched chain of conjugated carbon-carbon double bonds, which, on exposure to heat, cyclizes to form a graphitic structure. Similar methods of analysis were used to show that when HC3N is photolyzed in the presence of Titan's other atmospheric constituents (CH4, C2H6, C2H2, and CO), a copolymer is formed in which the added gases are incorporated as substituents on the polymer chain. Of special significance is the copolymer of HC3N and acetylene (C2H2). Even in experiments where C2H2 was absorbing nearly all of the incident photons, the ratio of C2H2 to HC3N found in the resulting polymer was only 2:1. Scanning electron microscopy was used to visually examine the polymer particles. While pure polyacetylene particles are amorphous spheres roughly 1 micrometer in diameter, polycyanoacetylenes appear to be strands of rough, solid particles slightly smaller in size. The copolymer of HC3N and C2H2 exhibits characteristics of both pure polymers. This is particularly important as pure polyacetylenes do not match the optical constants measured for Titan's atmospheric hazes. The copolymers produced by the incorporation of other minor atmospheric constituents, like HC3N, into the polyacetylenes are expected to have optical constants more comparable to those of the Titan haze.

Acetylene↗

The Discovery of Polyacetylene Film: The Dawning of an Era of Conducting Polymers (Nobel Lecture) Copyright((c)) The Nobel Foundation 2001. We thank the Nobel Foundation, Stockholm, for permission to print this lecture.

This lecture is not directly related to our discovery and development of conducting polymers to which the Nobel Prize in Chemistry 2000 was awarded. However, I would like to present my previous work that I had carried out just before we reached the discovery of chemical doping. I hope that this will be of use and deepen your understandings by learning what had happened before and how we reached the idea of chemical doping.

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Low-temperature synthesis of amorphous carbon nanocoils via acetylene coupling on copper nanocrystal surfaces at 468 K: a reaction mechanism analysis.

A new type of amorphous helical carbon nanofibers has been synthesized using copper nanocatalysts and an acetylene gas source at atmospheric pressure. The nanofibers are grown at 468 K, which is the lowest temperature by ordinary metal-catalyzed thermal chemical vapor deposition of hydrocarbon, and exhibit a symmetric growth mode in the form of twin helices. IR, XRD, Raman, and C/H molar ratio analyses reveal a polymer-like structure with a weak trans-polyacetylene feature. The nanofibers are a mixture of solid polymers and a small amount of carbon. A reaction mechanism has been proposed on the basis of the previous studies of acetylene adsorption, desorption properties, and surface reactions on copper (111), (110), and (001) planes under ultrahigh-vacuum (UHV) conditions as well as the results obtained in our study. The reaction mechanism of acetylene on copper single-crystal surfaces under UHV conditions indeed reflects the reaction mechanism under practical catalytic conditions at atmospheric pressure. The nanofibers grow mainly via acetylene coupling to solid polymers on copper nanocrystal surfaces. Acetylene also couples to yield small amounts of liquid oligomers and gaseous products, and undergoes slight carbon deposition during the fiber growth.

Acetylene↗

Multiple self-localized electronic states in trans-polyacetylene.

Electronic structure calculations on a conjugated polymer chain by Hartree-Fock and density functional theory show a sequence of self-localized states, which stand in contrast to the single self-localized soliton state described by the Su-Schrieffer-Heeger model Hamiltonian. An extended Hubbard model, which treats electron-electron interactions up to second neighbors, is constructed to demonstrate that the additional states arise from a strong band-bending effect due to the presence of localized electric fields of charged solitons. We suggest the optical response of these electronic states may be associated with the near-edge oscillations observed in photo-induced absorption spectra. Our calculations indicate further that in the presence of counterions, the additional localized states continue to exist. Implications regarding soliton mobility and high-resolution ion sensing are briefly discussed.

Acetylene↗

One-dimensional transport in polymer nanofibers.

We report our transport studies in quasi-one-dimensional (1D) conductors-helical polyacetylene fibers doped with iodine-and the data analysis for other polymer single fibers and tubes. We found that at 30 K<T<300 K, the conductance and the current-voltage characteristics follow the power law G(T) proportional, Talpha with alpha approximately 2.2-7.2 and I(V) proportional, Vbeta with beta approximately 2-5.7. Both G(T) andI(V) show the features characteristic of 1D systems such as a Luttinger liquid or Wigner crystal. The relationship between our results and theories for tunneling in 1D systems is discussed.

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Polymer chain packing analysis using molecular modeling.

This article describes the methodology used in applying molecular modeling to investigate the chain packing of polymers. Models for polyethylene and trans-polyacetylene were developed in order to study the cell packing energy as a function of the chain setting angles. This approach was found to yield chain setting angle values that corresponded to those determined experimentally by other authors. The limitations of the method are also discussed.

Acetylene↗

"Synthetic Metals": A Novel Role for Organic Polymers (Nobel Lecture) Copyright((c)) The Nobel Foundation 2001. We thank the Nobel Foundation, Stockholm, for permission to print this lecture.

Since the initial discovery in 1977, that polyacetylene (CH)(x), now commonly known as the prototype conducting polymer, could be p- or n-doped either chemically or electrochemically to the metallic state, the development of the field of conducting polymers has continued to accelerate at an unexpectedly rapid rate and a variety of other conducting polymers and their derivatives have been discovered. Other types of doping are also possible, such as "photo-doping" and "charge-injection doping" in which no counter dopant ion is involved. One exciting challenge is the development of low-cost disposable plastic/paper electronic devices. Conventional inorganic conductors, such as metals, and semiconductors, such as silicon, commonly require multiple etching and lithographic steps in fabricating them for use in electronic devices. The number of processing and etching steps involved limits the minimum price. On the other hand, conducting polymers combine many advantages of plastics, for example, flexibility and processing from solution, with the additional advantage of conductivity in the metallic or semiconducting regimes; however, the lack of simple methods to obtain inexpensive conductive polymer shapes/patterns limit many applications. Herein is described a novel, simple, and cheap method to prepare patterns of conducting polymers by a process which we term, "Line Patterning".

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Supramolecular self-assembly of dendronized polymers: reversible control of the polymer architectures through acid-base reactions.

Acid-base switchable supramolecular dendronized polyacetylenes (DPAs) with increasing steric bulk on going from generation one [G1] to three [G3], were constructed using multiple self-assembly processes between Fréchet-type [G1]-[G3]-dendritic dialkylammonium salts and a dibenzo[24]crown-8-containing polymer. The formation of the supramolecular systems is acid-base switchable to either an ON (rodlike dendronized polymers) or an OFF (flexible polymers) state. Thus, by controlling the superstructures of the supramolecular polymers with the [G1]-[G3] dendrons, it is possible to induce conformational changes within the polymer backbones. The supramolecular dendronized polymers, as well as their threading-dethreading properties, were characterized by (1)H NMR and UV absorption spectroscopies, gel permeation chromatography (GPC) and light scattering (LS). Independent measures of molecular weight (GPC, LS) indicate that DPAs behave as increasingly rigid macromolecules with each generation in solution. Molecular dynamics simulations of each DPA suggest that the lengths of the polymer backbones increase accordingly. Atomic force microscopy of the [G3]-dendronized polystyrene (DPS), as well as the DPAs, reveal surface morphologies indicative of aggregated superstructures.

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A conjugated polymer pn junction.

Dopant counterion diffusion has made the conjugated polymer pn homojunction a challenging target for decades. We report the electrochemical fabrication of a polyacetylene pn homojunction based on internally compensated forms where the dopant counterions are covalently bound to the polymer backbone. After drying under vacuum, the pn junction exhibits diode behavior with the ratio of the forward to reverse current at 2 V being 7. Despite such modest diode behavior, the fabricated pn junction is significant because it demonstrates the utility of internal compensation in the fabrication of metastable interfaces between dissimilarly doped conjugated polymers.

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Molecular simulation and experimental study of substituted polyacetylenes: fractional free volume, cavity size distributions and diffusion coefficients.

Glassy, disubstituted acetylene-based polymers exhibit extremely high gas permeabilities and high vapor/gas selectivities, which is quite unusual for conventional glassy polymers such as polysulfone. Diffusion coefficients of poly[1-phenyl-2-[p-(trimethylsilyl)phenyl]acetylene] (PTMSDPA) and poly[diphenylacetylene] (PDPA) were obtained using both molecular simulation and experimental techniques. PTMSDPA, a disubstituted glassy acetylene-based polymer, exhibits higher diffusivity than its desilylated analogue, PDPA. Simulation results are in good agreement with experimental data. Cavity size (free volume) distributions of both polymers are also obtained using an energetic-based algorithm (in't Veld et al., J. Phys. Chem. B 2000, 104, 12028) developed recently. Larger cavities in PTMSDPA contribute to its higher diffusivity, and higher permeability.

Journal Article↗