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Results for “radial basis function network”

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PubMed2001

On-line adaptive chaotic demodulator based on radial-basis-function neural networks.

Chaotic modulation is a useful technique for spread spectrum communication. In this paper, an on-line adaptive chaotic demodulator based on a radial-basis-function (RBF) neural network is proposed and designed. The demodulator is implemented by an on-line adaptive learning algorithm, which takes advantage of the good approximation capability of the RBF network and the tracking ability of the extended Kalman filter. It is demonstrated that, provided the modulating parameter varies slowly, spread spectrum signals contaminated by additive white Gaussian noise in a channel can be tracked in a time window, and the modulating parameter, which carries useful messages, can be estimated using the least-square fit. The Henon map is chosen as the chaos generator. Four test message signals, namely, square-wave, sine-wave, speech and image signals, are used to evaluate the performance. The results verify the ability of the demodulator in tracking the dynamics of the chaotic carrier as well as retrieving the message signal from a noisy channel.

Journal Article↗

PubMed2001

Drug design by machine learning: support vector machines for pharmaceutical data analysis.

We show that the support vector machine (SVM) classification algorithm, a recent development from the machine learning community, proves its potential for structure-activity relationship analysis. In a benchmark test, the SVM is compared to several machine learning techniques currently used in the field. The classification task involves predicting the inhibition of dihydrofolate reductase by pyrimidines, using data obtained from the UCI machine learning repository. Three artificial neural networks, a radial basis function network, and a C5.0 decision tree are all outperformed by the SVM. The SVM is significantly better than all of these, bar a manually capacity-controlled neural network, which takes considerably longer to train.

Algorithms↗

PubMed2005

Neural network based approach for anomaly detection in the lungs region by electrical impedance tomography.

In this paper, we have shown a simple procedure to detect anomalies in the lungs region by electrical impedance tomography. The main aim of the present study is to investigate the possibility of anomaly detection by using neural networks. Radial basis function neural networks are used as classifiers to classify the anomaly as belonging to the anterior or posterior region of the left lung or the right lung. The neural networks are trained and tested with the simulated data obtained by solving the mathematical model equation governing current flow through the simulated thoracic region. The equation solution and model simulation are done with FEMLAB. The effect of adding a higher number of neurons to the hidden layer can be clearly seen by the reduction in classification error. The study shows that there is interaction between the size (radius) and conductivity of anomalies and for some combination of these two factors the classification error of neural networks will be very small.

Computer Simulation↗

PubMed2001

Enhanced 3D shape recovery using the neural-based hybrid reflectance model.

It is known that most real surfaces usually are neither perfectly Lambertian model nor ideally specular model; rather, they are formed by the hybrid structure of these two models. This hybrid reflectance model still suffers from the noise, strong specular, and unknown reflectivity conditions. In this article, these limitations are addressed, and a new neural-based hybrid reflectance model is proposed. The goal of this method is to optimize a proper reflectance model by learning the weight and parameters of the hybrid structure of feedforward neural networks and radial basis function networks and to recover the 3D object shape by the shape from shading technique with this resulting model. Experimental results, including synthetic and real images, were performed to demonstrate the performance of the proposed reflectance model in the case of different specular effects and noise environments.

Journal Article↗

PubMed2006

[Automated recognition of quasars based on adaptive radial basis function neural networks].

Recognizing and certifying quasars through the research on spectra is an important method in the field of astronomy. This paper presents a novel adaptive method for the automated recognition of quasars based on the radial basis function neural networks (RBFN). The proposed method is composed of the following three parts: (1) The feature space is reduced by the PCA (the principal component analysis) on the normalized input spectra; (2) An adaptive RBFN is constructed and trained in this reduced space. At first, the K-means clustering is used for the initialization, then based on the sum of squares errors and a gradient descent optimization technique, the number of neurons in the hidden layer is adaptively increased to improve the recognition performance; (3) The quasar spectra recognition is effectively carried out by the above trained RBFN. The author's proposed adaptive RBFN is shown to be able to not only overcome the difficulty of selecting the number of neurons in hidden layer of the traditional RBFN algorithm, but also increase the stability and accuracy of recognition of quasars. Besides, the proposed method is particularly useful for automatic voluminous spectra processing produced from a large-scale sky survey project, such as our LAMOST, due to its efficiency.

English Abstract↗

PubMed2005

Development of migration models for acids in capillary electrophoresis using heuristic and radial basis function neural network methods.

A quantitative structure-mobility relationship (QSMR) was developed for the absolute mobilities of a diverse set of 277 organic and inorganic acids in capillary electrophoresis based on the descriptors calculated from the structure alone. The heuristic method (HM) and the radial basis function neural networks (RBFNN) were utilized to construct the linear and nonlinear prediction models, respectively. The prediction results were in agreement with the experimental values. The HM model gave a root-mean-square (RMS) error of 3.66 electrophoretic mobility units for the training set, 4.67 for the test set, and 3.88 for the whole data set, while the RBFNN gave an RMS error of 2.49, 3.19, and 2.65, respectively. The heuristic linear model could give some insights into the factors that are likely to govern the mobilities of the compounds, however, the prediction results of the RBFNN model seem to be better than that of the HM.

Acids↗

PubMedDate not supplied

Comparative study of QSAR/QSPR correlations using support vector machines, radial basis function neural networks, and multiple linear regression.

Support vector machines (SVMs) were used to develop QSAR models that correlate molecular structures to their toxicity and bioactivities. The performance and predictive ability of SVM are investigated and compared with other methods such as multiple linear regression and radial basis function neural network methods. In the present study, two different data sets were evaluated. The first one involves an application of SVM to the development of a QSAR model for the prediction of toxicities of 153 phenols, and the second investigation deals with the QSAR model between the structures and the activities of a set of 85 cyclooxygenase 2 (COX-2) inhibitors. For each application, the molecular structures were described using either the physicochemical parameters or molecular descriptors. In both studied cases, the predictive ability of the SVM model is comparable or superior to those obtained by MLR and RBFNN. The results indicate that SVM can be used as an alternative powerful modeling tool for QSAR studies.

Animals↗

PubMed1999

Radial basis function neural networks for the characterization of heart rate variability dynamics.

This study introduces new neural network based methods for the assessment of the dynamics of the heart rate variability (HRV) signal. The heart rate regulation is assessed as a dynamical system operating in chaotic regimes. Radial-basis function (RBF) networks are applied as a tool for learning and predicting the HRV dynamics. HRV signals are analyzed from normal subjects before and after pharmacological autonomic nervous system (ANS) blockade and from diabetic patients with dysfunctional ANS. The heart rate of normal subjects presents notable predictability. The prediction error is minimized, in fewer degrees of freedom, in the case of diabetic patients. However, for the case of pharmacological ANS blockade, although correlation dimension approaches indicate significant reduction in complexity, the RBF networks fail to reconstruct adequately the underlying dynamics. The transient attributes of the HRV dynamics under the pharmacological disturbance is elucidated as the explanation for the prediction inability.

Atropine↗

PubMed2002

Adaptive filtering of evoked potentials with radial-basis-function neural network prefilter.

Evoked potentials (EPs) are time-varying signals typically buried in relatively large background noise. To extract the EP more effectively from noise, we had previously developed an approach using an adaptive signal enhancer (ASE) (Chen et al., 1995). ASE requires a proper reference input signal for its optimal performance. Ensemble- and moving window-averages were formerly used with good results. In this paper, we present a new method to provide even more effective reference inputs for the ASE. Specifically, a Gaussian radial basis function neural network (RBFNN) was used to preprocess raw EP signals before serving as the reference input. Since the RBFNN has built-in nonlinear activation functions that enable it to closely fit any function mapping, the output of RBFNN can effectively track the signal variations of EP. Results confirmed the superior performance of ASE with RBFNN over the previous method.

Algorithms↗

PubMed2005

Prediction of pK(a) for neutral and basic drugs based on radial basis function Neural networks and the heuristic method.

PURPOSES: Quantitative structure-property relationships (QSPR) were developed to predict the pK(a) values of a set of neutral and basic drugs via linear and nonlinear methods. The ability of the models to predict pK(a) was assessed and compared. METHODS: The descriptors of 74 neutral and basic drugs in this study were calculated by the software CODESSA, which can calculate constitutional, topological, geometrical, electrostatic, and quantum chemical descriptors. Linear and nonlinear QSPR models were developed based on the heuristic method (HM) and radial basis function neural networks (RBFNN), respectively. The heuristic method was also used for the preselection of appropriate molecular descriptors. RESULTS: The obtained linear model had a correlation coefficient of r=0.884, F=37.72 with a root-mean-squared (RMS) error of 0.482 for the training set, and r=0.693, F=11.99, nd RMS=0.987 for the test set. The RMS in predicting the overall data set is 0.619. The nonlinear model gave better results; for the training set, r=0.886, F=202.314, and RMS=0.458, and for the test set r=0.737, F=15.41, and RMS=0.613. The RMS error in prediction for overall data set is 0.493. Prediction results from nonlinear model are in good agreement with experimental values. CONCLUSIONS: In present study, we developed a QSPR model to predict the important parameter (pK(a)) of neutral and basic drugs. The model is useful in predicting pK(a) during the discovery of new drugs when experimental data are unknown.

Neural Networks, Computer↗

PubMed2004

Efficient training of RBF networks for classification.

Radial Basis Function networks with linear outputs are often used in regression problems because they can be substantially faster to train than Multi-layer Perceptrons. For classification problems, the use of linear outputs is less appropriate as the outputs are not guaranteed to represent probabilities. We show how RBFs with logistic and softmax outputs can be trained efficiently using the Fisher scoring algorithm. This approach can be used with any model which consists of a generalised linear output function applied to a model which is linear in its parameters. We compare this approach with standard non-linear optimisation algorithms on a number of datasets.

Algorithms↗

PubMedDate not supplied

Classification of HIV protease inhibitors on the basis of their antiviral potency using radial basis function neural networks.

HIV protease inhibitors are being used as frontline therapy in the treatment of HIV patients. Multi-drug-resistant HIV mutant strains are emerging with the initial aggressive multi-drug treatment of HIV patients. This necessitates continued search for novel inhibitors of viral replication. These protease inhibitors may further be useful as pharmacological agents for inhibition of other viral replication. Classification models of HIV Protease inhibitors are developed using a data set of 123 compounds containing several heterocycles. Their inhibitory concentrations expressed as log (IC50) ranged from -1.52 to 2.12 log units. The dataset was divided into active and inactive classes on the basis of their antiviral potency. Initially a two-class problem (active, inactive) is explored using k-nearest neighbor approach. In order to introduce non-linearity in the classifier different approaches were investigated. This led to the goal of a fast, simple, minimum user input, radial basis function neural network (RBFNN) classifier development. Then the same two-class problem was resolved using the (RBFNN) classifier. A genetic algorithm with RBFNN fitness evaluator was used to search for the optimum descriptor subsets. The application of majority rules was also tested for the RBFNN classification. The best six descriptor model found by the new cost function showed predictive ability in the high 80% range for an external prediction set.

Algorithms↗

PubMedDate not supplied

Numerical solution of elliptic partial differential equation using radial basis function neural networks.

In this paper a neural network for solving partial differential equations is described. The activation functions of the hidden nodes are the radial basis functions (RBF) whose parameters are learnt by a two-stage gradient descent strategy. A new growing RBF-node insertion strategy with different RBF is used in order to improve the net performances. The learning strategy is able to save computational time and memory space because of the selective growing of nodes whose activation functions consist of different RBFs. An analysis of the learning capabilities and a comparison of the net performances with other approaches have been performed. It is shown that the resulting network improves the approximation results.

Neural Networks, Computer↗

PubMed2006

Function approximation and documentation of sampling data using artificial neural networks.

Biodiversity studies in ecology often begin with the fitting and documentation of sampling data. This study is conducted to make function approximation on sampling data and to document the sampling information using artificial neural network algorithms, based on the invertebrate data sampled in the irrigated rice field. Three types of sampling data, i.e., the curve species richness vs. the sample size, the curve rarefaction, and the curve mean abundance of newly sampled species vs.the sample size, are fitted and documented using BP (Backpropagation) network and RBF (Radial Basis Function) network. As the comparisons, The Arrhenius model, and rarefaction model, and power function are tested for their ability to fit these data. The results show that the BP network and RBF network fit the data better than these models with smaller errors. BP network and RBF network can fit non-linear functions (sampling data) with specified accuracy and don't require mathematical assumptions. In addition to the interpolation, BP network is used to extrapolate the functions and the asymptote of the sampling data can be drawn. BP network cost a longer time to train the network and the results are always less stable compared to the RBF network. RBF network require more neurons to fit functions and generally it may not be used to extrapolate the functions. The mathematical function for sampling data can be exactly fitted using artificial neural network algorithms by adjusting the desired accuracy and maximum iterations. The total numbers of functional species of invertebrates in the tropical irrigated rice field are extrapolated as 140 to 149 using trained BP network, which are similar to the observed richness.

Algorithms↗

PubMed2005

Potential of radial basis function neural networks in discriminating benign from malignant lesions of the lower urinary tract.

OBJECTIVE: To investigate the potential value of morphometry and neural network tools for discriminating benign from malignant nuclei and lesions of the lower urinary tract. STUDY DESIGN: The study group consisted of 33 cases of lithiasis, 41 cases of inflammation, 66 cases of benign hyperplasia of the prostate, 4 cases of carcinoma in situ, 48 cases of grade 1 transitional cell carcinoma of the bladder (TCCB) and 123 cases of grade 2 and 3 TCCB. Images of routinely processed voided urine smears stained by the Giemsa technique were analyzed by a custom image analysis system. Analysis of the images gave a data set of features from 31,158 nuclei. A radial basis function (RBF)-type neural network was employed to discriminate benign from malignant nuclei, based on the extracted morphometric and textural features. Subsequently a second RBF classifier was employed to discriminate benign from malignant cases. The nuclei from 156 randomly selected cases (50% of total cases) was used as a training set, and the nuclei from the remaining 159 cases made up the test set. Similarly, in an attempt to discriminate at the patient level, the same 156 cases were used to train an RBF classifier; the remaining 159 cases were used for the test set. The cases used for training and testing the 2 classifiers (nuclear and patient level) were the same for the 2 kinds of classifiers. RESULTS: Application of the RBF classifier permitted the correct classification of 93.64% of benign nuclei and 85.61% of malignant, giving an overall accuracy of 84.45%. At the patient level the RBF classifier permitted an overall accuracy of 94.97%. These results were on the test sets. CONCLUSION: The role of nuclear morphologic features in the cytologic diagnosis of lower urinary tract alterations was confirmed by the results of this study. The observed overlap in feature space indicates that the nuclear characteristics do not form strictly separate clusters; that fact explains the difficulty morphologists have with reproducible identification of nuclei from the lower urinary tract. Application of RBF offers good classification at the nuclear and patient level and promises to become a powerful tool for everyday practice in the cytologic laboratory.

Algorithms↗

PubMed2005

Use of artificial neural networks to evaluate the effectiveness of riverbank filtration.

Riverbank filtration (RBF) is a low-cost water treatment technology in which surface water contaminants are removed or degraded as the infiltrating water moves from the river/lake to the pumping wells. The removal or degradation of contaminants is a combination of physicochemical and biological processes. This paper illustrates the development and application of three types of artificial neural networks (ANNs) to estimate the effectiveness of two RBF facilities in the US. The feed-forward back-propagation network (BPN) and radial basis function network (RBFN) model prediction results produced excellent agreement with measured data at a correlation coefficient above 0.99 for filtrate water quality parameters, including temperature as well as turbidity, heterotrophic bacteria, and coliform removal. In comparison, the fuzzy inference system network (FISN) predicted only temperature and bacteria removal with reasonable accuracy. It is shown that the predictive performances of the ANNs depend on the model structure and model inputs.

Bacteria↗

PubMed2002

Bacteria classification using Cyranose 320 electronic nose.

BACKGROUND: An electronic nose (e-nose), the Cyrano Sciences' Cyranose 320, comprising an array of thirty-two polymer carbon black composite sensors has been used to identify six species of bacteria responsible for eye infections when present at a range of concentrations in saline solutions. Readings were taken from the headspace of the samples by manually introducing the portable e-nose system into a sterile glass containing a fixed volume of bacteria in suspension. Gathered data were a very complex mixture of different chemical compounds. METHOD: Linear Principal Component Analysis (PCA) method was able to classify four classes of bacteria out of six classes though in reality other two classes were not better evident from PCA analysis and we got 74% classification accuracy from PCA. An innovative data clustering approach was investigated for these bacteria data by combining the 3-dimensional scatter plot, Fuzzy C Means (FCM) and Self Organizing Map (SOM) network. Using these three data clustering algorithms simultaneously better 'classification' of six eye bacteria classes were represented. Then three supervised classifiers, namely Multi Layer Perceptron (MLP), Probabilistic Neural network (PNN) and Radial basis function network (RBF), were used to classify the six bacteria classes. RESULTS: A [6 x 1] SOM network gave 96% accuracy for bacteria classification which was best accuracy. A comparative evaluation of the classifiers was conducted for this application. The best results suggest that we are able to predict six classes of bacteria with up to 98% accuracy with the application of the RBF network. CONCLUSION: This type of bacteria data analysis and feature extraction is very difficult. But we can conclude that this combined use of three nonlinear methods can solve the feature extraction problem with very complex data and enhance the performance of Cyranose 320.

Algorithms↗

PubMed2006

Intelligent Bayes Classifier (IBC) for ENT infection classification in hospital environment.

Electronic Nose based ENT bacteria identification in hospital environment is a classical and challenging problem of classification. In this paper an electronic nose (e-nose), comprising a hybrid array of 12 tin oxide sensors (SnO2) and 6 conducting polymer sensors has been used to identify three species of bacteria, Escherichia coli (E. coli), Staphylococcus aureus (S. aureus), and Pseudomonas aeruginosa (P. aeruginosa) responsible for ear nose and throat (ENT) infections when collected as swab sample from infected patients and kept in ISO agar solution in the hospital environment. In the next stage a sub-classification technique has been developed for the classification of two different species of S. aureus, namely Methicillin-Resistant S. aureus (MRSA) and Methicillin Susceptible S. aureus (MSSA). An innovative Intelligent Bayes Classifier (IBC) based on "Baye's theorem" and "maximum probability rule" was developed and investigated for these three main groups of ENT bacteria. Along with the IBC three other supervised classifiers (namely, Multilayer Perceptron (MLP), Probabilistic neural network (PNN), and Radial Basis Function Network (RBFN)) were used to classify the three main bacteria classes. A comparative evaluation of the classifiers was conducted for this application. IBC outperformed MLP, PNN and RBFN. The best results suggest that we are able to identify and classify three bacteria main classes with up to 100% accuracy rate using IBC. We have also achieved 100% classification accuracy for the classification of MRSA and MSSA samples with IBC. We can conclude that this study proves that IBC based e-nose can provide very strong and rapid solution for the identification of ENT infections in hospital environment.

Algorithms↗