Application of deep blue diode laser to resonance Raman spectroscopy of hemoproteins.
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Blood Proteins↗
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Results for “Spectrum Analysis, Raman”
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Two-dimensional Fourier transform Raman correlation spectroscopy determination of the glycosidic linkages in amylose and amylopectin.
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Amylopectin↗
Raman scattering for respiratory gas monitoring in the operating room: advantages, specifications, and future advances.
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Anesthetics↗
Laser-Raman spectroscopy of cell walls from Micrococcus luteus (lysodeikticus) with special reference to cell wall typing.
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Cell Wall↗
Elastic modulus and stress-transfer properties of tunicate cellulose whiskers.
Experimental deformation micromechanics of natural cellulose fibers using Raman spectroscopy and X-ray diffraction have been widely reported. However, little has been published on the direct measurements of the mechanical properties, and in particular the elastic modulus, of the highly crystalline material in the native state. Here we report on measurements of the elastic modulus of tunicate cellulose using a Raman spectroscopic technique. A dispersed sample of the material is deformed using a four-point bending test, and a shift in a characteristic Raman band (located at 1095 cm(-1)) is used as an indication of the stress in the material. Relatively little intensity change of the Raman band located at 1095 cm(-1) is shown to occur for samples oriented parallel and perpendicular to the polarization direction of the laser, as compared to a highly oriented flax sample. This indicates that the tunicate sample is a two-dimensional in-plane random network of fibers. By use of this result, the Raman shift, and calibrations with strain from other materials, it is shown that the modulus of the material is very high, at about 143 GPa, and a lack of Raman band broadening is thought to be due to the fact that there is pure crystalline deformation occurring without the effect of crystalline/amorphous fractions. A strain sensitivity of the shift in the 1095-cm(-1) Raman peak for this specimen is shown to be -2.4 +/- 0.2 cm(-1)/%. A molecular mechanics approach, using computer simulation and an empirical force field, was used to predict the modulus of a highly oriented chain of the material, and this is found to be 145 GPa, which is in agreement with the experimental data. However, by use of a normal-mode analysis, it is found that a number of modes have positions close to the central positions of the experimental Raman band. One in particular is found to shift at a rate of 2.5 cm(-1)/%, but due to the complex nature of the structure, it is not entirely conclusive that this band is representative of the experimental findings.
Animals↗
Characterization of essential oils from lamiaceae species by fourier transform Raman spectroscopy.
The Fourier transform Raman (FT-Raman) spectra of pure terpenes and essential oils obtained by hydrodistillation of some Lamiaceae species, are presented. This study shows that principal components of an essential oil can be recognized by FT-Raman. Components predicted by FT-Raman spectrum of an essential oil correlate well with those found as major constituents by GC-MS. In this way the basic chemical character of an essential oil can be recognized. The results demonstrate that certain Raman intensities can be correlated to specific terpenes and therefore FT-Raman can discriminate between the essential oils of which main components belong to different classes of compounds.
Acyclic Monoterpenes↗
Elastic and inelastic light scattering in flow cytometry.
A review of the fundamental aspects of elastic light scattering suggests that information about the shape and internal structure may best be obtained from signals measured in the backscattering directions. Size information can be most readily extracted from forward scattering signals. Spectral analysis of scattered signals with incident white light is a subject that merits further study. Signals from cells that have been stained with fluorescent dyes are proportional to dye content in the usual flow-cytometric configuration except in the case of dense, strongly anisometric structures such as sperm cells. The recent discovery that Raman signals from molecules adsorbed on small silver particles are strongly enhanced suggests the possibility of utilizing this effect for identification of molecular species inside biological cells.
Electromagnetic Fields↗
[Study of the interaction of DNA with copper ions using IR- and Raman spectroscopy].
DNA with Cu2+ ions in solution and films is studied by IR and Raman spectroscopy at different relative humidities (R.H. = 51 divided by 98%). DNA complexed with Cu2+ ions is shown to transit to the double-helix conformation, passing A-form, the water content per nucleotide (n) being essentially larger: 12 for Cu2+/P = 0.4 (n = 8 for DNA without ions). Cu2+ decrease the biopolymer hydration at R.H. 50-76% interactions with Cu2+ are stated to depend on the hydration degree of macromolecules. The analysis of the absorption band shifts of Raman spectra evidences the changes in the base torsion angle around the glycoside bond to the values characteristic of the syn-conformation and the interaction both with phosphates and nitrogen bases.
Cations, Divalent↗
Membrane-damaging action of ricin on DPPC and DPPC-cerebrosides assemblies. A Raman and FTIR analysis.
Perturbations induced by a toxic lectin (ricin) on lipid organisation of model membranes prepared with DPPC and DPPC-cerebrosides mixtures have been analysed by Raman and infrared spectroscopy, two powerful and non-invasive methods. Our approach involves the observation of changes in the vibrational spectra of liquid multilayers in the PO2-, C = O and CH2 spectral regions for two lipid:ricin molar ratios (225:1, 75:1). The interfacial and polar regions of the multilayers, analysed by FTIR, appear to be perturbed by the protein. With both kinds of membranes, ricin mainly perturbs the C = O ester groups of the sn-2 acylchain of DPPC. In the PO2- stretching region, the frequency shifts are correlated with changes in polar group hydration. In the hydrophobic core of the multilayer membrane studied by Raman spectroscopy, the interaction of ricin is associated with changes in lipid packing. These perturbations depend upon the lipid composition of the membrane. With DPPC membranes, an affect is detected at temperatures lower than Tm. It corresponds to a decrease of the lipid ordering. With DPPC-cer membranes, the protein increases the acyl-chain packing order regardless of the temperature of the experiments (10 degrees C less than T less than 75 degrees C). No perturbation of Tm is observed after addition of ricin to either DPPC or DPPC-cer membranes. The different perturbations detected by Raman and FTIR suggest that ricin mainly interacts with the interfacial domains of the membranes.
1,2-Dipalmitoylphosphatidylcholine↗
Statistical mechanical analysis of Raman spectroscopic order parameter changes in pressure-induced lipid bilayer phase transitions.
The statistical mechanical cluster theory of Fisher as applied by Kanehisa and Tsong to phospholipid bilayers is modified to describe the effects of hydrostatic pressure on the state of an aqueous dispersion of the phospholipid dipalmitoyl phosphatidylcholine. A high pressure Raman scattering cell has been built to obtain the Raman spectra of aqueous dispersions of phospholipids as a function of the applied hydrostatic pressure from 0 to 100 atmospheres. Predicted thermal and pressure-induced phase transitions are compared with an experimentally obtained Raman order parameter derived from the ratio of two bands in the C-H stretching region of the Raman spectrum of the sample. The parameters of the theory are adjusted to obtain a satisfactory fit of the Raman order parameter versus temperature. The theory is then found to give an excellent prediction of the observed pressure dependence of the Raman order parameter with no changes in the adjustable parameters. The implications of the success of the theoretical fit is discussed. Particularly of interest is the rather high value of the critical temperature, Tc, for lipid bilayers which is predicted by the model.
Hydrostatic Pressure↗
Structure and interactions of phycocyanobilin chromophores in phycocyanin and allophycocyanin from an analysis of their resonance raman spectra.
Raman spectra of phycocyanobilin, phycocyanin, and allophycocyanin were obtained at resonance with their visible and near-UV transitions. These spectra were empirically assigned with the help of 14N- and 15N-isotopic substitutions and comparisons with resonance Raman spectra of phycoerythrin. These results confirm the previously suggested assignment of a conformation-sensitive band around 1239-1246 cm-1 to a mode involving nu CmH and nu CN coordinates. Computer-assisted decomposition of the complex, conformation-sensitive 1580-1670-cm-1 region yielded five components that we labeled I-V. The previously described spectral changes observed upon monomerization and denaturation in resonance Raman spectra of phycocyanin and allophycocyanin essentially arise from changes in the relative intensities of these components. Component I (around 1649-1651 cm-1) and component III (1621-1624 cm-1) originate predominantly from nu C=C at C15 of the chromophore. Their relative intensity ratio reflects the relative amounts of C15-Z-anti and C15-Z-syn methine bridge conformations, respectively. Component II (1633-1638 cm-1) is ascribed to a nu C=C mode of pyrrole rings; it is not sensitive to the chromophore conformation. Component IV is also conformation-insensitive and originates from nu C=N and nu C=C coordinates, most likely from ring C. Component V (1591-1594 cm-1) involves a nu C=N coordinate in ring D, coupled to a nu C=C coordinate of the C15 methine bridge. The implications of the present assignments on those of resonance Raman active modes of phytochrome are discussed. A consistent set of correlations between chromophore conformations and resonance Raman data is obtained for both phycobiliproteins and phytochrome.
Cyanobacteria↗
Raman spectroscopy of homologous plant toxins: crambin and alpha 1- and beta-purothionin secondary structures, disulfide conformation, and tyrosine environment.
The Raman spectrum of crambin crystals is different from the spectrum of crambin in solution. The amide I spectrum of crambin in solution is not different from the solution spectra of proteins homologous (greater than 40%) with crambin, alpha 1- and beta-purothionins. We have two interpretations of these results. One is that helical segments in crambin and the purothionins in solution are more irregular than those in crystalline crambin. Comparative analyses of amide I and amide III spectra, and of the conformational preferences of the amino acid sequences of these proteins, are consistent with this interpretation. The other is that, due to the way helical segments in crambin are stacked end on end along the same axis in the crystal, transition dipole coupling along the axis of these extended helixes enhances the amide I intensity of helical residues. On the basis of a combined Raman and sequence conformational analysis, we propose that the structure of the purothionins is the same as that of crambin in solution and that residues 7-12 in crystalline crambin are somewhat more regular and ordered than they are in solutions.
Antimicrobial Cationic Peptides↗
Raman properties of chlorophyll d, the major pigment of Acaryochloris marina: studies using both Raman spectroscopy and density functional theory.
The Raman spectroscopy of purified chlorophyll (Chl) d extracted from Acaryochloris marina has been measured over the wide region of 250-3200 cm(-1) at 77 K following excitation of its Soret band at 488 nm and analyzed with the aid of hybrid density-functional vibrational analyses. A Raman peak specific to Chl d, which arises from the formyl group 3(1) C=O stretching, was clearly observed at 1659 cm(-1) with medium intensity. Peaks due to other C=O stretching vibrations of the 13(1) keto-, 13(3) ester- and 17(3) groups were also observed. Four very strong peaks were observed in the range of 1000-1600 cm(-1), assigned to the CC stretching and mixtures of the CH3 bend and CN stretching. CCC and NCC bending contribute to medium intensity peaks at 986 and 915 cm(-1). Out-of-plane CH bending at Chl d methine sites 10, 5 and 20 contribute to observed peaks at 885, 864 and 853 cm(-1), respectively. A few modes involving the MgN stretching and MgNC bending motions were observed in the very low frequency range. Density functional theory (DFT) calculations have been used to make assignments on the observed Raman spectrum and the DFT results have been found to be in good agreement with the experimental results.
Bacteria↗
Raman spectroscopy--a prospective tool in the life sciences.
Although the physics of Raman spectroscopy and its application to purely chemical problems is long established, it offers a noninvasive, nondestructive, and water-insensitive probe to problems in the life sciences. Starting from the principles of Raman spectroscopy, its advantages, and methods for signal enhancement, the bulk of the review highlights recent applications. Structural investigations of a hormone receptor, testing the biocompatibility of dental implants, probing soil components and plant tissue alkaloids, and localization of single bacteria are just four problems in which Raman spectroscopy offers a solution or complements existing methods.
Animals↗
Particular behavior of the adenine and guanine ring-breathing modes upon the DNA conformational transitions.
Harmonic dynamics calculations performed on the deoxyguanosine (dG) and deoxyadenosine (dA) residues, based on a reliable force field, show that the breathing motions of both guanine and adenine residues are involved in two different vibration modes (750-500 cm-1 spectral region). The calculated results reveal a strong coupling of these modes with the sugar pucker motions. This effect has been verified for the dG residue by the Raman spectra of polyd(G-C). As far as the dA residue is concerned, the particular behavior of the adenine residue breathing mode predicted by these calculations, has been confirmed by Raman spectra of polyd(A-T) undergoing a B----Z conformational transition.
Adenine↗
Scanning Raman spectroscopy for characterizing compositionally spread films.
Composition-spread La(1-x)SrxMnO3 thin films were prepared by pulsed laser deposition technique from LaMnO3 and SrMnO3 targets. The films were epitaxial with a continuous variation of the out-of-plane lattice parameter along the direction of composition gradient. Scanning Raman spectroscopy has been employed as a nondestructive tool to characterize the composition-spread films. Raman spectra showed the variation of the structural, Jahn Teller distortions and the presence of coexisting phases at particular compositions that are in agreement with the previous observation on the single-crystal samples. Raman spectra on the continuous composition-spread film also reveal the effect of disorder and strain on the compositions.
Spectrum Analysis, Raman↗
Spectroscopy and bonding in side-on and end-on Cu2(S2) cores: comparison to peroxide analogues.
Spectroscopic methods combined with density functional calculations were used to study the disulfide-Cu(II) bonding interactions in the side-on micro -eta(2):eta(2)-bridged Cu(2)(S(2)) complex, [[Cu(II)[HB(3,5-Pr(i)(2)pz)(3)]](2)(S(2))], and the end-on trans- micro -1,2-bridged Cu(2)(S(2)) complex, [[Cu(II)(TMPA)](2)(S(2))](2+), in correlation to their peroxide structural analogues. Resonance Raman shows weaker S-S bonds and stronger Cu-S bonds in the disulfide complexes relative to the O-O and Cu-O bonds in the peroxide analogues. The weaker S-S bonds come from the more limited interaction between the S 3p orbitals relative to that of the O 2s/p hybrid orbitals. The stronger Cu-S bonds result from the more covalent Cu-disulfide interactions relative to the Cu-peroxide interactions. This is consistent with the higher energy of the disulfide valence level relative to that of the peroxide. The ground states of the side-on Cu(2)(S(2))/Cu(2)(O(2)) complexes are more covalent than those of the end-on Cu(2)(S(2))/Cu(2)(O(2)) complexes. This derives from the larger sigma-donor interactions in the side-on micro -eta(2):eta(2) structure, which has four Cu-disulfide/peroxide bonds, relative to the end-on trans- micro -1,2 structure, which forms two bonds to the Cu. The larger disulfide/peroxide sigma-donor interactions in the side-on complexes are reflected in their more intense higher energy disulfide/peroxide to Cu charge transfer transitions in the absorption spectra. The large ground-state covalencies of the side-on complexes result in significant nuclear distortions in the ligand-to-metal charge transfer excited states, which give rise to the strong resonance Raman enhancements of the metal-ligand and intraligand vibrations. Particularly, the large covalency of the Cu-disulfide interaction in the side-on Cu(2)(S(2)) complex leads to a different rR enhancement profile, relative to the peroxide analogues, reflecting a S-S bond distortion in the opposite directions in the disulfide/peroxide pi(sigma) to Cu charge transfer excited states. A ligand sigma back-bonding interaction exists only in the side-on complexes, and there is more sigma mixing in the side-on Cu(2)(S(2)) complex than in the side-on Cu(2)(O(2)) complex. This sigma back-bonding is shown to significantly weaken the S-S/O-O bond relative to that of the analogous end-on complex, leading to the low nu(S)(-)(S)/nu(O)(-)(O) vibrational frequencies observed in the resonance Raman spectra of the side-on complexes.
Copper↗
Raman microspectroscopic study on polymerization and degradation processes of a diacetylene derivative at surface enhanced Raman scattering active substrates. 1. Reaction kinetics.
Raman microspectroscopy was applied to study the polymerization kinetics of the Langmuir-Blodgett (LB) films of 10,12-pentacosadiynoic acid (DA) adsorbed on surface enhanced Raman scattering (SERS) active Ag island films. A two-dimensional (2D) Raman microscopic image measured at 1520 cm(-1) exhibits bright and dim spots with the diameter of several hundred nanometers. Raman microscopic spectra, measured by defocusing the excitation laser light (532 nm, diameter of ca. 10 mum) on the samples at room temperature, proved the occurrence of the surface processes consisting of the formation of polydiacetylene (PDA) in the blue phase, its conversion to the red phase, and subsequent bleaching. These reactions were negligible under the same condition for the DA-LB films prepared on a smooth (i.e., SERS-inactive) Ag film, indicating that the 532-nm-induced polymerization and the bleaching process are enhanced by the SERS-active substrates. At low temperatures below -50 degrees C, the Raman microscopic measurements proved the formation of the blue phase and its conversion to the red phase with much lower reaction rates compared to the corresponding rates at room temperature. The bleaching, however, was much suppressed at the low temperatures. The kinetic analyses of the formation of the blue phase and its conversion to the red phase were performed by using the intensity changes of the Raman bands due to the blue (1477 cm(-1)) and red (1517 cm(-1)) phases as a function of the irradiation time. The results strongly suggested the existence of at least two processes taking place simultaneously on the SERS-active substrates; that is, one of the processes is a sequential reaction, DA-monomers --> PDA in the blue phase --> PDA in the red phase, and the other is another sequential reaction, DA-monomers --> PDA in the red phase --> degradation species (probably amorphous carbon). Thus, even at the low temperatures, there occurs the surface reaction consisting of the formation of PDA and its degradation. The reaction can be ascribed to a process taking place at the highly SERS-active site, which gives the bright spot (so-called "hot spot") on the 2D Raman image, as proved by the confocal Raman microscopic measurement in the following paper.
Adsorption↗