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The significances of bacterial colony patterns.

Bacteria do many things as organized populations. We have recently learned much about the molecular basis of intercellular communication among prokaryotes. Colonies display bacterial capacities for multicellular coordination which can be useful in nature where bacteria predominantly grow as films, chains, mats and colonies. E. coli colonies are organized into differentiated non-clonal populations and undergo complex morphogenesis. Multicellularity regulates many aspects of bacterial physiology, including DNA rearrangement systems. In some bacterial species, colony development involves swarming (active migration of cell groups). Swarm colony development displays precise geometrical controls and periodic phenomena. Motile E. coli cells in semi-solid media form organized patterns due to chemotactic autoaggregation. On poor media, B. subtilis forms branched colonies using group motility and long-range chemical signalling. The significances of bacterial colony patterns thus reside in a deeper understanding of prokaryotic biology and evolution and in experimental systems for studying self-organization and morphogenesis.

Bacteria↗

Monitoring the initial expansion of focal ischaemic changes by diffusion-weighted MRI using a remote controlled method of occlusion.

The purpose of the present study was to quantify the early changes which occur on diffusion-weighted imaging following focal cerebral ischaemia. We have developed a method for the remote occlusion of the middle cerebral artery in the rat, allowing early changes to be monitored and images to be acquired before and after ischaemia under identical conditions. Sequential diffusion-weighted images were acquired before and for up to 6 h following the occlusion. The data show that a hyperintense area appears soon after occlusion which expands during the first 2 h. It has previously been shown that the hyperintensity observed after ischaemia is linked to events associated with energy failure. Our findings are in good agreement with previous pathophysiological studies of focal ischaemia, which suggest a growing of the energy depleted area. In conclusion, our data extend the usefulness of diffusion-weighted imaging to the study of the early spatial evolution of the most compromised area after focal ischaemia. Diffusion-weighted imaging may constitute a very powerful tool to investigate pharmacological therapies which may interact with this evolution, both in experimental and clinical studies.

Animals↗

Changes in zinc, copper and selenium status during adjuvant-induced arthritis in rats.

Trace elements such as zinc, copper and selenium are involved in the pathogenesis of inflammatory diseases. In order to obtain more information about the overall movements of these minerals during the evolution of an experimental chronic inflammatory process, trace element levels were determined in five body compartments of the rat at several time intervals after induction of adjuvant arthritis. Rapid and significant changes in plasma zinc and copper levels and in liver zinc levels were observed. These modifications occurred as early as those in biochemical parameters of inflammation such as serum fibrinogen and ceruloplasmin, and preceded the appearance of any clinical symptom of the disease. Inverse correlations were found between plasma zinc levels and these two biochemical indices. Other modifications in trace element levels were observed two weeks after disease induction, the most important being a considerable increase in liver copper levels. Although food intake of affected animals decreased with the progression of the disease, there was no evidence of depletion in zinc and copper levels over the study period. A redistribution of body zinc between different biological compartments (mainly plasma and liver) occurred simultaneously with an accumulation of copper in several organs. The decreasing selenium status of animals was not clearly related to the inflammatory process.

Animals↗

Salt and hypertension.

The salt hypothesis states that salt is a necessary condition for the genesis of essential hypertension; however, it is not a sufficient condition. Other factors---primarily genetics--are necessary for the expression of the disease. The arguments in favor of this still controversial subject originate from pathophysiology, evolution, history, pharmacology, experimental and clinical medicine, and epidemiology. Epidemiologic observations favoring the hypothesis mostly relate to comparisons between populations, and much less to comparisons within populations. The arguments against this hypothesis are related mostly to the well known difficulties of proving a within-population relationship of a relatively homogeneously distributed variable to an age-related variable (blood pressure). Mortality data derived from stomach cancer and stroke, compared within and between populations, provide only circumstantial, but nevertheless important, evidence in favor of the salt hypothesis. The strong, consistent, and independent association between stomach cancer and stroke mortality is best explained by the level of salt intake in the population. The observations made in Belgium over the last years are consistent with the salt hypothesis. A decrease in salt intake at the population level correlated with a marked decrease in stroke and stomach cancer mortality, larger than in any other European country, except Finland.

Aged↗

The integrity of welded interfaces in ultra high molecular weight polyethylene: Part 1-Model.

The difficulty of eradicating memory of powder-particle interfaces in UHMWPE for bearing surfaces for hip and knee replacements is well-known, and 'fusion defects' have been implicated frequently in joint failures. During processing the polymer is formed into solid directly from the reactor powder, under pressure and at temperatures above the melting point, and two types of inter-particle defect occur: Type 1 (consolidation-deficient) and Type 2 (diffusion-deficient). To gain quantitative information on the extent of the problem, the formation of macroscopic butt welds in this material was studied, by (1) modelling the process and (2) measuring experimentally the resultant evolution of interface toughness. This paper reports on the model. A quantitative measure of interface structural integrity is defined, and related to the "maximum reptated molecular weight" introduced previously. The model assumes an idealised surface topography. It is used to calculate the evolution of interface integrity during welding, for given values of temperature, pressure, and parameters describing the surfaces, and a given molar mass distribution. Only four material properties are needed for the calculation; all of them available for polyethylene. The model shows that, for UHMWPE typically employed in knee transplants, the rate of eradication of Type 1 defects is highly sensitive to surface topography, process temperature and pressure. Also, even if Type 1 defects are prevented, Type 2 defects heal extremely slowly. They must be an intrinsic feature of UHMWPE for all reasonable forming conditions, and products and forming processes should be designed accordingly.

Adhesiveness↗

Fetal ECG waveform analysis.

Fetal ECG waveform analysis as an adjunct to electronic fetal monitoring (EFM) has developed over the last 3 decades. From a multitude of potential parameters, ST waveform analysis has been documented to provide the information required to shift EFM from a screening device to a diagnostic tool that meets the standards of evidence-based medicine. This chapter details the experimental and clinical evolution of the STAN methodology for intrapartum fetal surveillance. Observational data formed the basis for cardiotocograph (CTG) and ST waveform analysis clinical guidelines. Data from two large, randomized controlled trials (6826 cases) are summarized together with the first analysis of the recently completed EU project of 7823 term fetuses monitored as part of the study to introduce ST analysis into clinical practice. The reduction in the incidence of newborns with marked neurological symptoms is supported by these findings. The detection of ST changes allowed earlier and more consistent intervention.

Animals↗

Cultivation of high-rate sulfate reducing sludge by pH-based electron donor dosage.

A novel self-regulating bioreactor concept for sulfate reduction is proposed aiming for high biomass concentrations and treatment capacities. The system consists of a cell suspension of sulfate reducing bacteria in a continuous stirred tank reactor (30 degrees C) fed with a mixture of both electron donor and electron acceptor (formic acid and sulfuric acid, respectively), nutrients and phosphate buffer via a pH controller. The pH rise due to sulfate reduction is balanced with dosage of the sulfate reducing substrates as acids. The reactor concept was shown to be capable of full sulfate reduction without competition for the electron donor by methanogens and acetogens. Activity assays revealed that hardly any methanogenic activity on formate was left in the suspension by the end of the continuous run (130 days). In addition, the sulfidogenic activity with formate and H2/CO2 had increased, respectively, 3.9 and 11.6 times at the end of the experimental run. The evolution of the particle size distribution of the cell suspension over time indicated that newly grown cells have the tendency to attach together in flocs or to the existing agglomerates.

Bacteria, Anaerobic↗

Thoracoscopy for correction of adult thoracic scoliosis.

The endoscopic technique of instrumentation, correction, and fusion for scoliosis has undergone radical modifications since the first surgery. Some key factors conducive to successful fusion, such as thorough discectomy and end plate removal, are common to endoscopic and non-endoscopic procedures. There are indeed special technical features in our endoscopic approach that clearly affect outcome, however, and their enumeration rightly chronicles the evolution of our experimental undertaking.

Adult↗

The frequency width of symmetric modes of an aluminum plate: manifestation of a complex slowness on a frequency spectrum.

The evolution of the experimental frequency width of symmetric modes of an aluminum plate is studied as a function of the angle of incidence below the first critical angle. It is found that the frequency width predicted by resonant scattering theory, corrected for the directivity of emitter and receiver, generally explains the experimental frequency width well. However, large discrepancies remain for the frequency width of the S1 mode at angles of incidence larger than 9 degrees. It is demonstrated that these are caused by not taking into account the complex nature of the slowness of the plate mode. This suggests that there is a need for a theory that models the interaction of a beam of ultrasound, bounded in space and time, with an elastic plate.

Journal Article↗

Self-organization of bidisperse colloids in water droplets.

Most of the colloidal clusters have been produced from oil-in-water emulsions with identical microspheres dispersed in oil droplets. Here, we present new types of binary colloidal clusters from phase-inverted water-in-oil emulsions using various combinations of two different colloids with several size ratios: monodisperse silica or polystyrene microspheres for larger particles and silica or titania nanoparticles for smaller particles. Obviously, a better understanding of how finite groups of different colloids self-organize in a confined geometry may help us control the structure of matter at multiple length scales. In addition, since aqueous dispersions have much better phase stability, we could produce much more diverse colloidal materials from water-in-oil emulsions rather than from oil-in-water emulsions. Interestingly, the configurations of the large microspheres were not changed by the presence of the small particles. However, the arrangement of the smaller particles was strongly dependent on the nature of the interparticle interactions. The experimentally observed structural evolutions were consistent with the numerical simulations calculated using Surface Evolver. These clusters with nonisotropic structures can be used as building blocks for novel colloidal structures with unusual properties or by themselves as light scatterers, diffusers, and complex adaptive matter exhibiting emergent behavior.

Journal Article↗

How does a thin volatile film move?

When a water film evaporates from a mica substrate, an interface similar to a solidification front develops, separating two films of different thicknesses. We show experimentally that the evolution dynamics is controlled mainly by material diffusion through the vapor phase rather than by hydrodynamic flow through the film. Our results illustrate the role of different contributions to pattern formation of volatile liquid films.

Letter↗

Platelet activating factor (PAF) as a mediator of injury in nephrotoxic nephritis.

Release of acetyl glyceryl ether phosphorylcholine, platelet-activating factor (PAF), has been demonstrated to be associated with glomerular inflammatory damage in acute serum sickness. Moreover, PAF can increase glomerular permeability to proteins and induce mesangial contraction. Thus PAF might be a good candidate as a mediator of glomerular damage. However the in vivo evidence that PAF might cause glomerular injury is lacking. To evaluate if PAF has a major role in promoting glomerular inflammatory reaction and fibrin deposition, we studied the effect of a molecule, L-652,731, which blocks the PAF receptor, on the evolution of an experimental model of anti-glomerular basement membrane (anti-GBM) glomerulonephritis (GN). GN was initiated by sheep-anti-rabbit nephrotoxic serum. A proliferative GN regularly occurred in which heavy proteinuria, intra and extracapillary proliferation of resident and inflammatory cells and fibrin deposition in Bowman's capsule were the prominent findings. Our results showed that the PAF receptor antagonist reduces the glomerular damage in anti-GBM GN, supporting the hypothesis that PAF is indeed a mediator of glomerular inflammatory reaction. PAF receptor blocking prevented renal function deterioration in the early phase of the disease, probably preserving glomerular hemodynamics. In the delayed phase of the disease the PAF receptor antagonist reduced proteinuria and prevented renal function deterioration and fibrin deposition. These effects appear to be mediated by an inhibitory action of PAF receptor blocking on macrophage accumulation and activation.

Animals↗

Proximate mechanisms of variation in the carotenoid-based plumage coloration of nestling great tits (Parus major L.).

Many vertebrates use carotenoid-based signals in social or sexual interactions. Honest signalling via carotenoids implies some limitation of carotenoid-based colour expression among phenotypes in the wild, and at least five limiting proximate mechanisms have been hypothesized. Limitation may arise by carotenoid-availability, genetic constraints, body condition, parasites, or detrimental effects of carotenoids. An understanding of the relative importance of the five mechanisms is relevant in the context of natural and sexual selection acting on signal evolution. In an experimental field study with carotenoid supplementation, simultaneous cross-fostering, manipulation of brood size and ectoparasite load, we investigated the relative importance of these mechanisms for the variation in carotenoid-based coloration of nestling great tits (Parus major). Carotenoid-based plumage coloration was significantly related to genetic origin of nestlings, and was enhanced both in carotenoid-supplemented nestlings, and nestlings raised in reduced broods. We found a tendency for ectoparasite-induced limitation of colour expression and no evidence for detrimental effects of carotenoids on growth pattern, mortality and recruitment of nestlings to the local breeding population. Thus, three of the five proposed mechanisms can generate individual variation in the expression of carotenoid-based plumage coloration in the wild and thus could maintain honesty in a trait potentially used for signalling of individual quality.

Analysis of Variance↗

Application of polyamorphism in water to spontaneous crystallization of emulsified LiCl-H2O solution.

Aqueous solutions are widely explained by the hydration or the bound waterfree water notion. Amorphous polymorphism (polyamorphism) in pure water, which is presently under vigorous discussion, may provide a different view over the solutions. Here, I changed pressure, P, temperature, T, and concentration, C, of emulsified LiCl-H2O solutions and studied their freezing by detecting its heat evolution. It was experimentally indicated that the homogeneous nucleation of low-density crystalline ice I (phase Ih or Ic), in pure water and in solutions, connects to the polyamorphic transition of high-density amorphous ice (HDA) to low-density amorphous ice (LDA). Thus, the polyamorphism of water relates to the phase behavior of aqueous solution. In accordance with the recent simulation result, the nucleation was thought to occur in two stages: the appearance of the LDA-like state and the crystallization. Usefulness of the polyamorphic point of view about the solutions was seen.

Journal Article↗

Rational design of nascent metalloenzymes.

Understanding the early genesis of new enzymatic functions is one of the challenges in protein design, mechanistic enzymology, and molecular evolution. We have experimentally mimicked starting points in this process by introducing primitive iron and oxygen binding sites at various locations in thioredoxin, a small protein lacking metal centers, by using computational design. These rudimentary active sites show emerging enzymatic activities that select to varying degrees between different oxygen chemistries. Even within these nascent enzymes, mechanisms by which different reactions are controlled can be discerned. These involve both stabilizing and destabilizing interactions imposed on the metal center by the surrounding protein matrix.

Catalysis↗

Influence of the airflow rate on heat and mass transfers during sewage sludge and bulking agent composting.

The aim of this study was to characterize the gas flow during the composting, at a pilot scale, of a mixture of sludge and bulking agent, in order to model heat and mass transfers involved in the process. Thus, a closed 300-litre cylindrical pilot was fed with a mixture of wastewater treatment sludge and pine bark. Aeration was supplied from the bottom via an air blower and gases were collected at the top. Three experiments were led with constant gas flow rates and one with varying aeration rate. Temperatures within the pilot reactor were monitored all along the trials and their evolutions were discussed in term of heat transfers and parameters influencing the heat balance. Concurrently, Retention Time Distribution curves were obtained by injecting a pulse of methane in the entering airflow and by analysing the methane concentration in the exhaust gas, every two or three days during composting. The gas flow, within the composting medium, was characterized by a dispersion model, which is a deviation of the plug flow model. The dispersive effect of the flow was correlated to the evolution of the experimental temperature, and a convective dispersion model was used to describe the heat and mass transfers through the gas flow. These equations will be, in future work, coupled with heat production and mass degradation terms in order to model the global mass and heat balances of this composting process. Finally, axial dispersion coefficients of gases were determined and correlated with the airflow rate.

Air Movements↗

The search for candidate genes of alcoholism: evidence from expression profiling studies.

Alcoholism is the outcome of complex interactions between the environment and multiple gene loci, which may encode pre-existing susceptibility, or contribute to the neuroadaptations underlying the process of developing dependence. Because of this, the prospect of simultaneous, genome wide, high-throughput analysis of gene expression allowed by microarray technology has met with great expectations. The hope has been that new insights into pathogenesis of substance disorders will rapidly be gained, leading to identification of novel treatment targets. The usefulness of this approach as a discovery tool in addiction research will be critically reviewed here. In this article, we describe the evolution of our experimental approaches, from first generation Affymetrix expression arrays to present high-density arrays, and from the use of original Affymetrix software to more advanced analysis of the probe signal, and different statistical approaches to creating candidate gene lists. Further, we address some methodological issues critical to the study of brain samples by microarray technology. We also summarize findings from several expression profiling experiments involving different animal models of alcoholism. The accumulation of expression data from different animal models allows mining the database for patterns of overlap. Such second level analysis depends on the generation of uniform and reliable datasets.

Alcoholism↗