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Gas-phase separations of protein and peptide ion fragments generated by collision-induced dissociation in an ion trap.

Ion mobility/time-of-flight mass spectrometry techniques have been used to examine distributions of fragment ions generated by collision-induced dissociation (CID) in a quadrupole ion trap. The mobility-based separation step prior to mass-to-charge (m/z) analysis reduces spectral congestion and provides information that complements m/z-based assignments of peaks. The approach is demonstrated by examining fragmentation patterns of insulin chain B (a 30-residue peptide), and ubiquitin (a protein containing 76 amino acids). Some fragments of ubiquitin show evidence for multiple stable conformations.

Gas Chromatography-Mass Spectrometry↗

Gas-phase separations of electrosprayed peptide libraries.

High-resolution ion mobility spectrometry has been combined with time-of-flight mass spectrometry for analysis of a combinatorial peptide library that is expected to contain 676 components. In this approach, the components of a mixture of three residue peptides, having the general form (D)Phe-Xxx-Xxx-CONH2 (where Xxx is randomized over 26 residues including 10 naturally occurring amino acids and 16 synthetic forms) were ionized by electrospray ionization. Ion mobility/time-of-flight distributions have been recorded for all ions using a nested drift(flight) time technique. The improvement in resolving power [(t/delta t) = 100-150 for singly charged ions] was illustrated by analysis of a mixture of tryptic digest peptides using high- and low-resolution instruments. The approach allows many components of the library (e.g., structural, sequence, and stereo isomers) that cannot be distinguished by mass spectrometry alone to be resolved. Impurities due to side reactions appear to be minimal, comprising < 10% of the total ion signal. Direct evidence for approximately 60-70% of the expected peptides is found. Variation in ion abundance for different components indicates that there are differences in solution concentrations or ionization efficiencies for the components.

Amino Acid Sequence↗

Fluorous catalysis under homogeneous conditions without fluorous solvents: a "greener" catalyst recycling protocol based upon temperature-dependent solubilities and liquid/solid phase separation.

The thermomorphic fluorous phosphines P((CH(2))(m)()(CF(2))(7)CF(3))(3) (m = 2, 1a; m = 3, 1b) exhibit ca. 600-fold solubility increases in n-octane between -20 (1a = 0.104 mM) and 80 degrees C (63.4 mM) and 1500-fold solubility increases between -20 and 100 degrees C (151 mM). They catalyze conjugate additions of alcohols to methyl propiolate under homogeneous conditions in n-octane at 65 degrees C and can be recovered by simple cooling and precipitation and used again. This avoids the use of fluorous solvents during the reaction or workup, which are expensive and can leach in small amounts. Teflon shavings can be used to mechanically facilitate recycling, and (31)P NMR analyses indicate >97% phosphorus recovery (85.2% 1a, 12.2% other). (19)F NMR analyses show that 2.3% of the (CF(2))(7)CF(3) moieties of 1a leach, in some form, into the n-octane (value normalized to phosphorus). 1a similarly catalyzes additions in the absence of solvent. Yield data match or exceed those of reactions conducted under fluorous/organic liquid/liquid biphase conditions. The extra methylene groups render 1b more nucleophilic than 1a and, thus, a more active catalyst. The temperature dependence of the solubility of 1a is measured in additional solvents and compared to that of the nonfluorous phosphine PPh(3).

Journal Article↗

High-performance liquid phase separation of glycosides. 5. Determination of individual glucosinolates in cabbage and rapeseed by laser-induced fluorescene capillary electrophoresis via the enzymatically released isothiocyanate aglycon.

A capillary electrophoresis (CE) method was developed for the profiling and determination of individual glucosinolates (GSs) via their isothiocyanate degradation products upon myrosinase digestion. The resulting isothiocyanates, the structures of which are reflective of the parent GS's, were then converted to their corresponding amines via base hydrolysis or reaction with 1, 2-benzenedithiol. Subsequently, the amines were fluorescently labeled to allow their sensitive detection by laser-induced fluorescence (LIF). The CE method involved the use of in situ charged micelles for the separation of isothiocyanates and their corresponding fluorescently labeled amines by micellar electrokinetic capillary chromatography (MECC). The term "in situ charged micelles" refers to micelles formed by complexing the polar hydroxyl groups of glycosidic surfactants with borate. The MECC method with on-column LIF detection was applied to the determination of GSs in white cabbage, rapeseed leaves, and rapeseed roots.

Brassica↗

Coalescence-induced coalescence and dimensional crossover during the phase separation in ternary surfactant/polymer/water mixtures.

We studied the separation process in the ternary mixtures of nonionic surfactant (C(12)E(6), hexaethylene glycol monododecyl ether), polymer (PEG = poly(ethylene glycol)), and water. The separation process of PEG/water rich domains from the surfactant rich matrix was observed by the optical microscopy. From the morphological analysis, we determined the size of the domains as a function of time. On this basis we identified a dominating mechanisms of domains growth, that is the coalescence-induced coalescence mechanism. The coalescence (collision) event of two droplets induces a flow or a change of concentration distribution around droplets which pushes other droplets together inducing further growth. We also observed the evaporation-condensation (Lifshitz-Slyozov) mechanism of growth, but it did not affect the growth of large domains appreciably. We determined two regimes of the coalescence-induced coalescence associated with the dimensionality of the system. When the domains were smaller or comparable in size to the sample thickness we observe a three-dimensional growth. When the domains became larger than the sample thickness, a two-dimensional growth was observed. In the first regime, the size of the domains, L(t), grew linearly with t, while in the second regime, L(t) approximately t(0.3). In the binary, surfactant/water system, water domains grew by the geometrical coalescence-induced coalescence as L(t) approximately t in three dimensions.

Journal Article↗