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In situ determination of the thermodynamic surface properties of chemically modified surfaces on a local scale: an attempt with the atomic force microscope.

We have monitored deflection-distance curves with an atomic force microscope (AFM) in contact mode, with a silicon nitride tip, on chemically modified silicon wafers, in the air. The wafers were modified on their surface by grafting self-assembled monolayers (SAMs) of different functional groups such as methyl, ester, amine, or methyl fluoride. A chemically modified surface with a functionalized hydroxyl group was also considered. Qualitative analysis allowed us to compare adhesive forces versus chemical features and surface energy. The systematic calibration procedure of the AFM measurements was performed to produce quantitative data. Our results show that the experimentally determined adhesive force or thermodynamic work of adhesion increases linearly with the total surface energy determined with contact angles measured with different liquids. The influence of capillary condensation of atmospheric water vapor at the tip-sample interface on the measured forces is discussed. Quantitative assessment values were used to determine in situ the SAM-tip thermodynamic work of adhesion on a local scale, which have been found to be in good agreement with quoted values. Finally, the determination of the surface energy of the silicon wafer deduced from the thermodynamic work of adhesion is also proposed and compared with the theoretical value.

Microscopy, Atomic Force↗

Protecting nanoscaled non-oxidic particles from oxygen uptake by coating with nitrogen-containing surfactants.

To suppress the reactivity of nanoscaled non-oxidic powders of titanium nitride (TiN) and silicon carbonitride (SiCN) against hydrolysis and oxidation, chemical surface modification with nitrogen-containing surfactants was investigated. Among these surfactants, long-chain primary amines, ethylenediamines, guanidines, nitriles, isocyanates, and succinimides were examined. Thermogravimetry, elemental analysis, and behavior against the water-vapor adsorption of the modified particles were used as methods to estimate the protective capacity of the organic coating material. The best results were obtained by using the long-chain amines and octadecylisocyanate, which were indicated by a significant shift of the powder oxidation toward the higher temperatures and an increase of the particle hydrophobicity. A long-chain succinimide was found to be the most effective in dispersing nanoscaled TiN in organic media. Preparation of a stable aqueous dispersion without significant changes in the elemental composition of the powder was achieved by the application of an ionic surfactant to the surface-modified particles.

Hydrolysis↗

Hierarchical assembly and compliance of aligned nanoscale polymer cylinders in confinement.

We report a combined top-down/bottom-up hierarchical approach to fabricate massively parallel arrays of aligned nanoscale domains by means of the self-assembly of asymmetric polystyrene-block-poly(ethylene-alt-propylene) diblock copolymers. Silicon nitride grating substrates of various depths and periodicities are used to template the alignment of the high-aspect-ratio cylindrical polymer domains. Alignment is nucleated by polystyrene preferentially wetting the trough sidewalls and is thermally extended throughout the polymer film by defect annihilation. Topics discussed include a detailed analysis of the capacity of this system to accommodate lithographic defects and observations of alignment beyond the confined channel volumes. This graphoepitaxial methodology can be exploited in hybrid hard/soft condensed matter systems for a variety of applications.

Microscopy, Atomic Force↗

Formation and characterization of DNA microarrays at silicon nitride substrates.

A versatile method for direct, covalent attachment of DNA microarrays at silicon nitride layers, previously deposited by chemical vapor deposition at silicon wafer substrates, is reported. Each microarray fabrication process step, from silicon nitride substrate deposition, surface cleaning, amino-silanation, and attachment of a homobifunctional cross-linking molecule to covalent immobilization of probe oligonucleotides, is defined, characterized, and optimized to yield consistent probe microarray quality, homogeneity, and probe-target hybridization performance. The developed microarray fabrication methodology provides excellent (high signal-to-background ratio) and reproducible responsivity to target oligonucleotide hybridization with a rugged chemical stability that permits exposure of arrays to stringent pre- and posthybridization wash conditions through many sustained cycles of reuse. Overall, the achieved performance features compare very favorably with those of more mature glass based microarrays. It is proposed that this DNA microarray fabrication strategy has the potential to provide a viable route toward the successful realization of future integrated DNA biochips.

Base Sequence↗

Carbonate formation on bioactive glasses.

The system termed 58S is a sol-gel-synthesized bioactive glass composed of SiO2, CaO, and P2O5, used in medicine as bone prosthetic because, when immersed in a physiological fluid, a layer of hydroxycarbonate apatite is formed on its surface. The mechanism of bioactive glass 58S carbonation was studied in the vacuum by means of in-situ FTIR spectroscopy with the use of CO2, H2O, and CD3CN as probe molecules. The study in the vacuum was necessary to identify both the molecules specifically involved in the carbonation process and the type of carbonates formed. Bioactive glass 58S was compared to a Ca-doped silica and to CaO. On CaO, ionic carbonates could form by contact with CO2 alone, whereas on 58S and on Ca-doped silica carbonation occurred only if both CO2 and an excess of H2O were present on the sample. The function of H2O was not only to block surface cationic sites, so that CO2 could not manifest its Lewis base behavior, but also to form a liquid-like (mono)layer that allowed the formation of carbonate ions. The presence of H2O is also supposed to promote Ca2+ migration from the bulk to the surface. Carbonates formed at the surface of CaO and of Ca-bearing silicas (thus including bioactive glasses) are of the same type, but are produced through two different mechanisms. The finding that a water excess is necessary to start heavy carbonation on bioactive glasses seemed to imply that the mechanism leading to in-situ carbonation simulates, in a simplified and easy-to-reproduce system, what happens both in solution, when carbonates are incorporated in the apatite layer, and during sample shelf-aging.

Apatites↗

Growth and reactions of SiOx/Si nanostructures on surface-templated molecule corrals.

Surface-templated nanostructures on the highly oriented pyrolytic graphite (HOPG) basal plane were created by controlled Cs+- or Ga+)ion bombardment, followed by subsequent oxidation at high temperature, forming molecule corrals. The corrals were then used for template growth of SiOx/Si nanostructures. We demonstrate here that, for SiOx/Si nanostructures formed in controlled molecule corrals, the amount of silicon deposited on the surface is directly correlated with the corral density, making it possible to generate patterned SiOx/Si nanostructures on HOPG. Since the size, depth, position, and surface density of the nanostructures can be controlled on the HOPG, it is possible to produce surfaces with patterned or gradient functionalities for applications in fields such as biosensors, microelectronics, and biomaterials (e.g., neuron pathfinding). If desired, the SiOx structures can be reduced in size by etching in dilute HF, and further oxidation of the nanostructures is slow enough to provide plenty of time to functionalize them using ambient and solution reactions and to perform surface analysis. Organosilane monolayers on surface-templated SiOx/Si nanostructures were examined by X-ray photoelectron spectroscopy, time-of-flight secondary ion mas spectrometry, and atomic force microscopy. Silanes with long alkyl chains such as n-octadecyltrichlorosilane (C18) were found to both react on SiOx/Si nanostructures and to condense on the HOPG basal plane. Shorter-chain silanes, such as 11-bromoundicyltrimethoxysilane (C11) and 3-mercaptopropyltrimethoxysilane (C3) were found to react preferentially with SiOx/Si nanostructures, not HOPG. The SiOx/Si nanostructures were also found to be stable toward multiple chemical reactions. Selective modification of SiOx/Si nanostructures on the HOPG basal plane is thus achievable.

Cesium↗

Cell membranes suspended across nanoaperture arrays.

We present a method for spreading large (>100 microm(2)) cell membrane fragments across nanoapertures in planar supports. Electron-beam and focused-ion-beam lithography were used to fabricate arrays of 50-600 nm diameter holes in free-standing silicon nitride (SiN) solid films 100-500 nm thick. By pressing adhering live cells onto the nanostructured SiN surface and then removing them, planar cell membrane sheets (CMSs) were transferred in a well-defined orientation onto the SiN support. We demonstrate the accessibility to both extracellular and intracellular surfaces of CMSs by targeting membrane constituents side-specifically with fluorescent markers. Our approach is of interest for studying ligand-receptor interactions using optical, electrical, and scanning probe techniques at the single-molecule level.

Cell Membrane↗

Specific and nonspecific interaction forces between Escherichia coli and silicon nitride, determined by poisson statistical analysis.

The nature of the physical interactions between Escherichia coli JM109 and a model surface (silicon nitride) was investigated in water via atomic force microscopy (AFM). AFM force measurements on bacteria can represent the combined effects of van der Waals and electrostatic forces, hydrogen bonding, steric interactions, and perhaps ligand-receptor type bonds. It can be difficult to decouple these forces into their individual components since both specific (chemical or short-range forces such as hydrogen bonding) and nonspecific (long-range colloidal) forces may be present in the overall profiles. An analysis is presented based on the application of Poisson statistics to AFM adhesion data, to decouple the specific and nonspecific interactions. Comparisons with classical DLVO theory and a modified form of a van der Waals expression for rough surfaces were made in order to help explain the nature of the interactions. The only specific forces in the system were due to hydrogen bonding, which from the Poisson analysis were found to be -0.125 nN. The nonspecific forces of 0.155 nN represent an overall repulsive interaction. These nonspecific forces are comparable to the forces calculated from DLVO theory, in which electrostatic-double layer interactions are added to van der Waals attractions calculated at the distance of closest approach, as long as the van der Waals model for "rough" spherical surfaces is used. Calculated electrostatic-double layer and van der Waals interactions summed to 0.116 nN. In contrast, if the classic (i.e., smooth) sphere-sphere model was used to predict the van der Waals forces, the sum of electrostatic and van der Waals forces was -7.11 nN, which appears to be a large overprediction. The Poisson statistical analysis of adhesion forces may be very useful in applications of bacterial adhesion, because it represents an easy way to determine the magnitude of hydrogen bonding in a given system and it allows the fundamental forces to be easily broken into their components.

Bacterial Adhesion↗

Dendritic structures of poly(ethylene glycol) on silicon nitride and gold surfaces.

A hydrophilic silicon nitride surface was grafted with poly(ethylene glycol) monomethyl ether (average formula weight of 5000 Da) in a one-step protocol. The domains of stable dendritic structures of self-assembled monolayer islands on a silicon nitride surface were observed with atomic force microscopy. The moduli of elasticity of these dendritic structures in air and in KCl aqueous solution were compared. The value of the Young's modulus of these structures is reduced by more than 3 orders of magnitude, from approximately 12 GPa measured in air to approximately 5 MPa in KCl solution. This dramatic reduction in elasticity was attributed to the swelling of the dendritic structures in aqueous solution, which was verified by the increased film thickness. These dendritic structures were not stable in the aqueous environment and could be removed by soaking in water for 22 h because of the hydrolysis of the silicate bonds. This fact was confirmed by the reduction of the C1s signal in the X-ray photoelectron spectroscopy experiments. These morphologies are not unique to silicon nitride substrate; similar features were also observed for thiolated poly(ethylene glycol) monomethyl ether molecules absorbed on a gold surface.

Adsorption↗

Improved silicon nitride surfaces for next-generation microarrays.

This work reports how the use of a standard integrated circuit (IC) fabrication process can improve the potential of silicon nitride layers as substrates for microarray technology. It has been shown that chemical mechanical polishing (CMP) substantially improves the fluorescent intensity of positive control gene and test gene microarray spots on both low-pressure chemical vapor deposition (LPCVD) and plasma-enhanced chemical vapor deposition (PECVD) silicon nitride films, while maintaining a low fluorescent background. This results in the improved discrimination of low expressing genes. The results for the PECVD silicon nitride, which has been previously reported as unsuitable for microarray spotting, are particularly significant for future devices that hope to incorporate microelectronic control and analysis circuitry, due to the film's use as a final passivating layer.

Fluorescence↗

Two-level antibacterial coating with both release-killing and contact-killing capabilities.

Using a combination of an aqueous layer-by-layer deposition technique, nanoparticle surface modification chemistry, and nanoreactor chemistry, we constructed thin film coatings with two distinct layered functional regions: a reservoir for the loading and release of bactericidal chemicals and a nanoparticle surface cap with immobilized bactericides. This results in dual-functional bactericidal coatings bearing both chemical-releasing bacteria-killing capacity and contact bacteria-killing capacity. These dual-functional coatings showed very high initial bacteria-killing efficiency due to the release of Ag ions and retained significant antibacterial activity after the depletion of embedded Ag because of the immobilized quaternary ammonium salts.

Anti-Bacterial Agents↗

Direct electrical measurement of the self-assembled nickel silicide nanowire.

We present results from the direct electrical measurement of an as-grown nanowire. The nickel silicide (NiSi) nanowire was spontaneously grown across a trench between two electrodes used for measurement. The NiSi nanowire, 58 nm in diameter and 2.9 microm in length, showed a low resistance characteristic of 147.9 Omega. This unique method is straightforward and does not require removal of a grown nanowire to be moved into a measurement environment.

Electric Conductivity↗

Silicon oxide nanoparticles reveal the origin of silicate grains in circumstellar environments.

A synergistic effort combining experiments in beams and first principles theoretical investigations is used to propose mechanisms that could lead to the formation of silicates and nanoparticles with silicon-rich cores through agglomeration of SiO, an abundant oxygen-bearing species in space. The silicon oxygen species involved in the transformation have optical excitations that could contribute to extended red emissions and blue luminescence. Apart from resolving an outstanding astronomical problem, we demonstrate novel silicon architectures.

Computer Simulation↗

Short synthesis of the CDEF ring system of lactonamycin.

[reaction: see text]. A synthesis of the CDEF fragment of lactonamycin is achieved in eight steps (six pots) from the known and readily available anhydride 4 via a Diels-Alder reaction between tricycle 13 and 2,3-dimethylbenzoquinone.

Anti-Bacterial Agents↗

Synthesis of (-)-pinolidoxin: divergent synthetic strategy exploiting a common silacyclic precursor.

[reaction: see text] We describe a highly convergent and efficient synthesis of (-)-pinolidoxin, a potent modulator of plant pathogenesis, providing unambiguous determination of the relative and absolute stereostructure of this highly oxygenated fungal metabolite. Our unique strategy highlights the applications of novel silacyclic precursors for stereocontrolled polyol synthesis and features the finding of the reversible ring-closing metathesis.

Alkenes↗

Asymmetric construction of quaternary carbon stereocenters: high stereoselection in Mukaiyama aldol reactions of 2-siloxyindoles with chiral aldehydes.

[reaction: see text] A new synthesis of enantiopure 3,3-disubstituted oxindoles by stereoselective Mukaiyama aldol reaction of 3-substituted 2-siloxyindoles and chiral, enantiopure aldehydes having nitrogen or oxygen substituents at the alpha carbon is described. When the C3 substituent of the prochiral nucleophile is aryl or heteroaryl, stereoselectivity is high (10-80:1).

Aldehydes↗

Bismuth triflate-chiral bipyridine complexes as water-compatible chiral Lewis acids.

[reaction: see text] Catalytic asymmetric hydroxymethylation of silicon enolates with an aqueous formaldehyde solution has been developed using a chiral bismuth complex. This is the first example of highly enantioselective reactions using a chiral bismuth catalyst in aqueous media. In this paper, we have added Bi(OTf)(3)-1 complex as a "water-compatible Lewis acid". Bi(OTf)3 is unstable in the presence of water but is stabilized by the basic ligand.

2,2'-Dipyridyl↗