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At least 811 records · Page 45Linked to original sources
PubMed1994

Bacillus DNA in fossil bees: an ancient symbiosis?

We report here the isolation of DNA from abdominal tissue of four extinct stingless bees (Proplebeia dominicana) in Dominican amber, PCR amplification of a 546-bp fragment of the 16S rRNA gene from Bacillus spp., and their corresponding nucleotide sequences. These sequences were used in basic local alignment search tool searches of nonredundant nucleic acid data bases, and the highest scores were obtained with 16S rRNA sequences from Bacillus spp. Phylogenetic inference analysis by the maximum-likelihood method revealed close phylogenetic relationships of the four presumed ancient Bacillus sequences with Bacillus pumilus, B. firmus, B. subtilis, and B. circulans. These four extant Bacillus spp. are commonly isolated from abdominal tissue of stingless bees. The close phylogenetic association of the extracted DNA sequences with these bee colonizers suggests that a similar bee-Bacillus association existed in the extinct species P. dominicana.

Animals↗
PubMed1998

Use of 13C nuclear magnetic resonance to assess fossil fuel biodegradation: fate of [1-13C]acenaphthene in creosote polycyclic aromatic compound mixtures degraded by bacteria.

[1-13C]acenaphthene, a tracer compound with a nuclear magnetic resonance (NMR)-active nucleus at the C-1 position, has been employed in conjunction with a standard broad-band-decoupled 13C-NMR spectroscopy technique to study the biodegradation of acenaphthene by various bacterial cultures degrading aromatic hydrocarbons of creosote. Site-specific labeling at the benzylic position of acenaphthene allows 13C-NMR detection of chemical changes due to initial oxidations catalyzed by bacterial enzymes of aromatic hydrocarbon catabolism. Biodegradation of [1-13C]acenaphthene in the presence of naphthalene or creosote polycyclic aromatic compounds (PACs) was examined with an undefined mixed bacterial culture (established by enrichment on creosote PACs) and with isolates of individual naphthalene- and phenanthrene-degrading strains from this culture. From 13C-NMR spectra of extractable materials obtained in time course biodegradation experiments under optimized conditions, a number of signals were assigned to accumulated products such as 1-acenaphthenol, 1-acenaphthenone, acenaphthene-1,2-diol and naphthalene 1,8-dicarboxylic acid, formed by benzylic oxidation of acenaphthene and subsequent reactions. Limited degradation of acenaphthene could be attributed to its oxidation by naphthalene 1,2-dioxygenase or related dioxygenases, indicative of certain limitations of the undefined mixed culture with respect to acenaphthene catabolism. Coinoculation of the mixed culture with cells of acenaphthene-grown strain Pseudomonas sp. strain A2279 mitigated the accumulation of partial transformation products and resulted in more complete degradation of acenaphthene. This study demonstrates the value of the stable isotope labeling approach and its ability to reveal incomplete mineralization even when as little as 2 to 3% of the substrate is incompletely oxidized, yielding products of partial transformation. The approach outlined may prove useful in assessing bioremediation performance.

Acenaphthenes↗
PubMed1997

The evolution of tetrapod ears and the fossil record.

In the earliest tetrapods, the fenestra vestibuli was a large hole in the braincase wall bounded by bones of different embryological origins: the otic capsule and occipital arch components, and also, in all except the Devonian Acanthostega, the dermal parasphenoid. This means that the hole lay along the line of the embryonic metotic fissure. Early tetrapod braincases were poorly ossified internally, and no specialized opening for a perilymphatic duct is evident. It is arguable that the earliest tetrapods had neither a perilympllatic duct crossing the otic capsule nor a specialized auditory receptor in a separate lagenar pouch. The primitive tetrapod condition is found in the earliest amniotes, and the separate development of (1) a fenestra vestibuli confined to the limits of the otic capsule, (2) a specialized pressure relief window also derived from components on the line of the metolic fissure, (3) a nonstructural, vibratory stapes and (4) increased internal ossification of the internal walls of the otic capsule, can be traced separately in synapsids, lepidosauromorph diapsids, archosauromorph diapsids, probably turtles, and amphibians. This suggests separate development of true tympanic ears in each of these groups. Developments indicating the existence of a true tympanic ear in amniotes are first found in animals from the Triassic period, and a correlation with the evolution of insect sound production is suggested.

Animals↗
PubMed1993

Quaternary environments and the evolution of primates in East Asia, with notes on two new specimens of fossil Cercopithecidae from China.

Primate faunas in East Asia since the mid-Tertiary have undergone a series of major changes in response to a complex sequence of environmental changes. As a consequence of the Himalayan orogeny and the rapid, episodic uplift of the Tibetan plateau, the climate of East Asia during the late Tertiary became monsoonal and thus more strongly seasonal. This led to the expansion of seasonal tropical forests and, in some areas, grasslands. During the Pleistocene, the climatic consequences of continued rapid uplift of the Tibetan plateau and other land masses (e.g. the Qinling mountains) were combined with those of glaciations, resulting in dramatic climatic oscillations between warm-humid and cold-dry phases. The contraction of tropical environments that began in the late Tertiary reached its peak at the last glacial maximum (LGM) and was responsible for the decline in the distribution and diversity of hominoids in East Asia. Cercopithecids, which were only minor elements of the late Tertiary primate faunas, colonized tropical, subtropical and temperate environments in the Pleistocene and were able to reradiate into those environments after the LGM. The abilities of monkeys to populate a wide range of terrestrial environments (eurytopy) contrast with those of apes, which are restricted to tropical forest environments (stenotopy).

Animals↗
PubMed1983

Metallic elements in fossil fuel combustion products: amounts and form of emissions and evaluation of carcinogenicity and mutagenicity.

Metallic elements contained in coal, oil and gasoline are mobilized by combustion processes and may be emitted into the atmosphere, mainly as components of submicron particles. The information about the amounts, composition and form of metal compounds is reviewed for some fuels and combustion processes. Since metal compounds are always contained in urban air pollutants, they have to be considered whenever an evaluation of biological impact of air pollutants is made. The value of currently used bioassays for the evaluation of the role of trace metal compounds, either as major biologically active components or as modifiers of biological effects of organic compounds is assessed. The whole animal bioassays for carcinogenicity do not seem to be an appropriate approach. They are costly, time-consuming and not easily amenable to the testing of complex mixtures. Some problems related to the application and interpretation of short-term bioassays are considered, and the usefulness of such bioassays for the evaluation of trace metal components contained in complex air pollution mixtures is examined.

Air Pollutants↗
PubMed2005

From eggs to fossils: epigenesis and transformation of species in Pander's biology.

Christian Heinrich Pander (1794-1865), a Russian scientist of German culture, is known for his epoch-making work in embryology, as well as for his important contributions to palaeontology. Indeed he viewed embryonic development and the history of the earth as two aspects of one and the same essential phenomenon, namely, a perpetual metamorphosis affecting the living world on different scales. He viewed embryology as a gradual, epigenetic transformation (as opposed to preformation) with an intermediary stage, the formation of simple germ-layers. As early as 1821, he argued more generally that species themselves transform under the influence of certain environmental factors. Pander thus embodies the very close link that existed between the triumph of epigenesis and the expansion of transformist theories in the early 19th century.

Animals↗
PubMed1991

A "living fossil" sequence: primary structure of the coelacanth (Latimeria chalumnae) hemoglobin--evolutionary and functional aspects.

The coelacanth (Latimeria chalumnae, Actinistia) has a single hemoglobin component. The primary structures of the alpha- and beta-chains are presented. They could be separated by reversed-phase HPLC. Peptides obtained by tryptic digestion of the native and oxidized chains were isolated by reversed-phase HPLC and sequenced in liquid and gas-phase sequenators. The alignment was achieved by employing the N-terminal sequences of the native chains and those of a beta-chain cyanogen bromide peptide as well as fragments obtained by acid hydrolysis. The Latimeria alpha-chains consist of 142 amino-acid residues, due to a fish-specific insertion between positions 46 and 47, whereas the beta-chains are of normal length (146 residues). Latimeria alpha- and beta-chains share 72 (51.1%) and 70 (47.9%) identical residues with human hemoglobin, respectively. Numerous heme contacts and positions involved in subunit interface contacts are replaced. The most interesting of them were studied by molecular modeling. The loss of an alpha 1/beta 2-contact by the exchanges alpha 92(FG4)Arg----Leu and beta 43(CD2)Glu----Lys might be responsible for the easy dissociation of the tetrameric hemoglobin molecule. A comparison of the residues replaced in contact positions with fishes and amphibians revealed the highest number of matches between Latimeria and tadpoles. The same result was obtained by the evaluation of other regions relevant for structure and function of the molecule, like exon-intron boundary regions, phosphate binding sites and salt bridges responsible for the Bohr effect.

Amino Acid Sequence↗