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PubMed2005

An unprecedented process involving normal and redox transmetallation reactions between Hg and Pt affording the unexpected K[Pt2[CH2C(O)Me]6(mu-Cl)3] complex: the key role of X-ray powder diffraction in unravelling its nature and structure.

[Hg{CH2C(O)Me}2] reacts with K[PtCl3(CH2=CH2)](2 : 1 molar ratio) to give K[Pt2{CH2C(O)Me}6(mu-Cl)3] (1); the intermediate [Pt{CH2C(O)Me}Cl2(CH2=CH2)]- has been detected in solution and isolated as a Me4N+ salt; the process occurs through successive normal and redox transmetallation reactions and an ab initio X-ray powder diffraction study of has proven to be essential to establish its nature.

Crystallization↗
PubMed2001

Quantitative analysis of crystalline pharmaceuticals in powders and tablets by a pattern-fitting procedure using X-ray powder diffraction data.

A pattern-fitting procedure for quantitative analysis of crystalline pharmaceuticals in solid dosage forms using X-ray powder diffraction data is described. This method is based on a procedure for pattern-fitting in crystal structure refinement, and observed X-ray scattering intensities were fitted to analytical expressions including some fitting parameters, i.e. scale factor, peak positions, peak widths and degree of preferred orientation of the crystallites. All fitting parameters were optimized by the non-linear least-squares procedure. Then the weight fraction of each component was determined from the optimized scale factors. In the present study, well-crystallized binary systems, zinc oxide-zinc sulfide (ZnO-ZnS) and salicylic acid-benzoic acid (SA-BA), were used as the samples. In analysis of the ZnO-ZnS system, the weight fraction of ZnO or ZnS could be determined quantitatively in the range of 5-95% in the case of both powders and tablets. In analysis of the SA-BA systems, the weight fraction of SA or BA could be determined quantitatively in the range of 20-80% in the case of both powders and tablets. Quantitative analysis applying this pattern-fitting procedure showed better reproducibility than other X-ray methods based on the linear or integral intensities of particular diffraction peaks. Analysis using this pattern-fitting procedure also has the advantage that the preferred orientation of the crystallites in solid dosage forms can be also determined in the course of quantitative analysis.

Benzoic Acid↗
PubMed2001

Disordered crystal structure of pentamethylcyclopentadienylsodium as seen by high-resolution X-ray powder diffraction.

The crystal structure of pentamethylcyclopentadienylsodium, [NaC10H15] (NaCp*), has been determined from high-resolution X-ray powder diffraction. The compound crystallizes in space group Cmcm with lattice parameters a = 4.61030 (3), b = 16.4621 (3), c = 14.6751 (2) A, V = 1113.77 (4) A(3) (Z = 4). NaCp* forms polymeric multidecker chains along the a axis. The Rietveld refinement (R(p) = 0.050 and R(F) = 0.163) shows that the Cp* moieties occupy, with disorder, two different orientations rotated away from the eclipsed conformation by +/-13.8 degrees.

Journal Article↗
PubMed1998

Structural studies of endohedral metallofullerenes by synchrotron radiation powder diffraction.

The endohedral natures of the metallofullerenes Y@C(82) and Sc(2)@C(8)4 are described based on synchrotron radiation powder diffraction experiments. For structural analysis, a combination of the maximum-entropy method (MEM) and Rietveld refinement was employed to analyse the complicated powder pattern. The obtained MEM charge densities show a clear distinction of the endohedral natures of the mono- and dimetallofullerenes.

Journal Article↗
PubMed2006

High-resolution powder diffraction study of purple membrane with a large Guinier-type camera.

X-ray diffraction patterns from a film of oriented purple membranes, which comprise two-dimensional crystals of bacteriorhodopsin (BR) trimers, were recorded with a 1 m-pathlength Guinier-type camera at SPring-8 BL40B2. A well focused X-ray beam and a camera with a high angular resolution of 0.024 degrees enabled a powder diffraction profile with very sharp and well separated peaks to be obtained up to a resolution of 2.3 A. Using integrated diffraction intensities up to a Bragg spacing of 4.2 A, a cluster of bulky amino acid residues and the head group of the BR chromophore are apparent in the electron density map projected along the membrane normal. Thus, a combination of synchrotron X-rays and large Guinier camera can be used for analyzing the conformational changes of BR in the intact state. In addition, the method might be extended to the structural analysis of film materials composed of two-dimensional arrays of nanoparticles.

Equipment Design↗
PubMed1995

Long Horizontal Parallel Slits with 0.03 degrees Angular Resolution for Powder Diffraction Using Synchrotron Radiation.

Long horizontal parallel slits with angular apertures of 0.032 and 0.065 degrees were constructed for powder diffraction experiments with synchrotron radiation. They have been tested at the BL-4B experimental station at the Photon Factory by using a monochromated beam with a wavelength of 1.528 A. The horizontal parallel slits with the smaller aperture gave a full-width at half-maximum of 0.030 (1) degrees for the (200) reflection from CeO(2) and an intensity about one order of magnitude higher than that obtained with a receiving slit in the same angular resolution, demonstrating the finest horizontal parallel slits developed so far. The misalignment of the horizontal parallel slits does not affect the intensity whilst it shifts the Bragg-peak positions systematically.

Journal Article↗
PubMedDate not supplied

X-ray powder diffraction data for selected drugs: furosemide, hydrochlorothiazide, naproxen, naproxen sodium, propranolol hydrochloride, and the halopheniramine maleates.

X-ray powder diffraction data for 9 commonly used drug substances are reported. The data for furosemide, hydrochlorothiazide, propranolol hydrochloride, dexchlorpheniramine maleate, and brompheniramine maleate have been indexed by reference to published crystal structure data. The racemic modifications of propranolol hydrochloride and brompheniramine maleate are shown to exist as racemic compounds rather than racemic mixtures.

Chlorpheniramine↗
PubMed2001

Quantifying amorphous content of lactose using parallel beam X-ray powder diffraction and whole pattern fitting.

The objective of this study was to demonstrate the applicability of parallel beam X-ray powder diffraction (XRPD) and a new method for whole pattern fitting to the quantification of the residual amount of amorphous content in a pharmaceutical solid using lactose as a model system. Lactose monohydrate, prepared by slurry conversion of anhydrous lactose, was mixed with different amounts of amorphous lactose produced by lyophilization. X-ray powder diffractograms of each mixture were recorded and analyzed by whole pattern fitting using Percentage Crystallinity Determination Software from Kratos Analytical Inc. The polycapillary X-ray optic, which provides a parallel beam of X-radiation, has advantages over Bragg-Brentano Optics with respect to sample height artifacts. Significant shifts in peak position with changes in sample height of lactose monohydrate were observed using Bragg-Brentano Optics while no change was detected for the polycapillary X-ray optic. A technique to normalize all diffractograms to have the same total integrated intensity was necessary to eliminate tube fluctuation effects. After normalization, the amorphous content of lactose in the range of 1-10% was reproducibly predicted (small standard deviation between samplings) using whole pattern fitting. The limit of detection was calculated to be 0.37% amorphous content. The results indicated that parallel beam XRPD and whole pattern fitting can provide accurate analysis of relatively small amounts of amorphous content in pharmaceuticals compared to typical XRPD analysis.

Lactose↗
PubMed1997

An evaluation of crystal structure of mannan I by X-ray powder diffraction and molecular mechanics studies.

The present study reports the re-examination of the crystal structure of mannan I by the X-ray powder diffraction study combined with the miniature crystal model simulation. A primary objective of this study was to investigate an adequate chain staggering position along the fiber axis. Among the several crystal structure models proposed for mannan I, that derived from the electron diffraction study of the single crystals was adopted as a starting model. The X-ray crystallographic residuals were calculated for the single crystal structure at different chain staggering positions, while the ab projection was kept invariant. In a similar fashion, the miniature crystal models consisting of seven mannotetraoses were constructed, each having different chain staggering values and the three-dimensional structures of all the models were subsequently optimized by using the MM3(92) program without introducing any constraint. Both the X-ray residual and lattice energy plots with respect to the chain staggering position showed the common minima around the -0.25 x c chain staggering. The minimum models were subjected to a search for preferred orientations of O2 and O6 hydroxyl groups. It was found that the hydroxyl groups present inside the minicrystal tended to rotate into particular orientations during the structure optimizations to form the O5-H-O2 and O3-H-O6 intermolecular hydrogen bonds between the adjacent oligomers in an alternative direction.

Cell Wall↗
PubMed2002

Synthetic hydrocerussite, 2PbCO(3) x Pb(OH)(2), by X-ray powder diffraction.

Synthetic hydrocerussite [trilead dihydroxide dicarbonate, Pb(3)(CO(3))(2)(OH)(2)] can be easily obtained, as a white powder, by the action of carbon dioxide and water on either lead or litharge at pH 4-5. This compound is also found in lead corrosion technological products as a fine-grained phase. Ab initio crystal structure determination was carried out on X-ray powder diffraction data. The heavy-atom method and the Patterson function helped determine the crystallographic model and the atom locations. The Rietveld fitting procedure was used for the final refinement. The atomic arrangement is closely related to the structures of other lead hydroxide carbonates. The hydrocerussite structure can be viewed as a sequence of two types of layers stacked along [001]. Layer A is composed of Pb and CO(3), and layer B is composed of Pb and OH. The stacking sequence is ...BAABAA...

Journal Article↗
PubMed2000

Structure of the defect perovskite Ce1/3NbO3: a redetermination by electron and neutron powder diffraction

The crystal structure of the defect perovskite Ce1/3NbO3, cerium niobium oxide, has been re-examined by neutron powder and electron diffraction. The results of a powder neutron Rietveld refinement indicate that the structure is monoclinic: space group P2/m with Z = 4, a = 5.5267 (3), b = 7.8824 (2), c = 5.5245 (3) A, beta = 90.294 (1)degrees, V= 240.67 (2) A3 at 298 K with chi2 = 2.570. Previous reports have described the Ce1/3NbO3 structure in a smaller (V/2) orthorhombic cell based solely upon X-ray powder diffraction data. The presence of weak reflections in the electron diffraction pattern provides conclusive evidence for a monoclinic superstructure of the orthorhombic cell. While these superlattice reflections are barely detectable with X-ray radiation, they are clearly visible in the neutron diffraction experiments. The superlattice reflections are shown to arise from a tilting of the NbO6 octahedra which results in the reduction of symmetry from orthorhombic to monoclinic. It is also found that the Ce3+ and Nb5+ cations are displaced from the centres of their respective polyhedra to accommodate the bond-valence requirements of the crystal structure. It is likely that distortions of this type are present in other Ln1/3NbO3 and Ln1/3TaO3 defect perovskites.

Journal Article↗
PubMed2002

Structures of three substituted arenesulfonamides from X-ray powder diffraction data using the differential evolution technique.

The structures of three substituted arenesulfonamides have been solved from laboratory X-ray powder diffraction data, using a new direct-space structure solution method based on a differential evolution algorithm, and refined by the Rietveld method. In 2-toluenesulfonamide, C(7)H(9)NO(2)S (I) (tetragonal I4(1)/a, Z = 16), the molecules are linked by N-H...O=S hydrogen bonds into a three-dimensional framework. In 3-nitrobenzenesulfonamide, C(6)H(6)N(2)O(4)S (II) (monoclinic P2(1), Z = 2), N-H...O=S hydrogen bonds produce molecular ladders, which are linked into sheets by C-H...O=S hydrogen bonds: the nitro group does not participate in the hydrogen bonding. Molecules of 4-nitrobenzenesulfonamide, C(6)H(6)N(2)O(4)S (III) (monoclinic P2(1)/n, Z = 4), are linked into sheets by four types of hydrogen bond, N-H...O=S, N-H...O(nitro), C-H...O=S and C-H...O(nitro), and the sheets are weakly linked by aromatic pi...pi stacking interactions.

Journal Article↗
PubMed2005

Abinitio structure determination using dispersive differences from multiple-wavelength synchrotron-radiation powder diffraction data.

The purpose of this paper and a test case study is to assess a method of ab initio structure solution from powder diffraction data using f' difference techniques. A theoretical foundation for the approach used is first provided. Then, with a test case (nickel sulfate hexahydrate), it is shown that both the position of the anomalous scatterer (Ni) can be determined and the structure can be developed in full. Specifically, synchrotron-radiation data were collected at two wavelengths close to the K edge for Ni and three wavelengths remote from the Ni absorption edge, at 1.3, 1.8 and 2.16 A. These five wavelengths then allowed various combinations to be tried to establish which wavelength pairs gave the optimum signal in the Patterson maps using dispersive amplitude differences. The initial phases derived from the metal-atom position then allowed the structure to be fully developed by difference Fourier cycling. The relevance of these developments to structure-solution possibilities for proteins via powder dispersive difference data is then outlined.

Journal Article↗
PubMed2002

Lead tartrate from X-ray powder diffraction data.

The structure of lead tartrate, Pb(2+).C(4)H(4)O(6)(2-), has been solved from X-ray powder diffraction data. The cation exhibits ninefold coordination and the tartrate groups are linked through Pb.O contacts to form a three-dimensional network.

Journal Article↗
PubMed2004

Powder diffraction study of a coordination polymer comprised of rigid building blocks: [Rh2(O2CCH3)4.mu2-Se2C5H8-Se,Se']infinity.

The crystal structure of a new hybrid product comprised of two rigid building blocks, namely dirhodium(II) tetraacetate, [Rh(2)(O(2)CCH(3))(4)] (1), and 2,6-diselenaspiro[3.3]heptane, Se(2)C(5)H(8) (2), has been solved ab initio using laboratory source X-ray powder diffraction (XRPD) data. The rigid body refinement approach has been applied to assist in finding an adequate model and to reduce the number of the refined parameters. Complex [Rh(2)(O(2)CCH(3))(4).mu(2)-Se(2)C(5)H(8)-Se,Se'] (3) conforms to the triclinic unit cell with lattice parameters of a = 8.1357(4), b = 8.7736(4), and c = 15.2183(8) A, alpha = 77.417(3), beta = 88.837(3), and gamma = 69.276(4) degrees, V = 989.66(8) A(3), and Z = 2. The centrosymmetric P space group was selected for calculations. The final values of the reduced wR(p), R(p), and chi(2) were calculated at 0.0579, 0.0433, and 5.95, respectively. The structure of 3 is a one-dimensional zigzag polymer built on axial Rh...Se interactions at 2.632(6) A. The 2,6-diselenaspiro[3.3]heptane ligand acts as a bidentate linker bridging dirhodium units via both selenium atoms. The geometrical parameters of individual groups for rigid body refinement have been obtained from X-ray powder data for dirhodium(II) tetraacetate (1) and from single-crystal X-ray diffraction for diselenium molecule 2. The crystal structures of 1 and 2 are reported here for the first time. For 1 indexing based on XRPD data has resulted in the triclinic unit cell P with lattice parameters of a = 8.3392(7), b = 5.2216(5), and c = 7.5264(6) A, alpha = 95.547(10), beta = 78.101(6), and gamma = 104.714(13) degrees, V = 309.51(5) A(3), and Z = 1. The final values were wR(p) = 0.0452, R(p) = 0.0340, and chi(2) = 1.99. The 1D polymeric motif built on axial Rh.O interactions of the centrosymmetric dirhodium units has been confirmed for the solid-state structure of 1. Compound 2,6-diselenaspiro[3.3]heptane (2) conforms to the monoclinic space group P2(1)/c with the unit cell parameters of a = 5.9123(4), b = 19.6400(13), and c = 5.8877(4) A, beta = 108.5500(10) degrees, V = 648.15(8) A(3), and Z = 4.

Copper↗
PubMed2004

Phonons from powder diffraction: a quantitative model-independent evaluation.

We describe a model-independent approach for the extraction of detailed lattice dynamics information from neutron powder diffraction data, based on a statistical analysis of atomistic configurations generated using reverse Monte Carlo structural refinement. Phonon dispersion curves for MgO extracted in this way are shown to reproduce many of the important features found in those determined independently using neutron triple-axis spectroscopy. By means of molecular dynamics simulations, we quantify the extent to which the diffraction data are sensitive to lattice dynamics in this system.

Journal Article↗