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PubMed1997

The detection of blood contamination in human follicular fluid.

PURPOSE: The aim of this study was to compare the reliability of the methods conventionally used to identify low levels of blood contamination in human follicular fluid (hFF) as applicable in the clinical environment. METHODS: Follicular fluid (n = 339) and plasma samples (n = 20) were collected from patients (n = 138) attending the Centre for Fertility Studies, HF Verwoerd Hospital, University of Pretoria, South Africa. hFF blood contamination was assessed by means of (a) visual inspection, (b) hematocrit (Hct), (c) spectrophotometric analysis, (d) spectrophotometric hemoglobin kit, and (e) Combur-9-test urine sticks. RESULTS: (1) Neither hematocrit nor spectrophotometry provided reliable detection at low levels of blood contamination. (2) Visual inspection presented with a better discriminatory ability than either Hct or spectrophotometry. (3) Combur-9-test sticks identified up to 50% of blood-contaminated fluids. (4) Spectrophotometrically determined hemoglobin levels presented with weak discriminatory abilities for detecting blood-contaminated fluids. CONCLUSIONS: Visual inspection as performed in this study provides a fast and relatively reliable method for the determination of blood-contaminated hFFs. In a laboratory environment, however, it would be recommended that a combination of visual inspection, Hct, and spectrophotometric evaluation be employed for the selection of blood-free fluids.

Blood↗

PubMed2004

Unusual patterns of I-131 contamination.

Whole body imaging with radioiodine can detect functioning metastases, which can often be effectively treated with appropriate amounts of radioiodine. Non-physiologic I-131 uptake detected on images is usually interpreted as suggesting functioning thyroid metastases. However, extra-thyroidal I-131 accumulation does not always imply thyroid cancer metastases and has been reported on many occasions, including various non-thyroidal neoplasms, and contamination by body secretions. In order to avoid unnecessary therapeutic interventions it is extremely important to properly distinguish false-positive sites of I-131 localization. Three patients with unusual radioiodine contamination patterns, either presented for the first time or rarely presented in the existing literature, were reported. Reported cases consist of contamination in hair (due to styling hair with sputum), contamination in neck (due to drooling during sleep) and, contaminated chewing gum. False positive contamination sources were clarified by careful examination of patients and further images when necessary.

Adult↗

PubMed2001

BETR North America: a regionally segmented multimedia contaminant fate model for North America.

We present the Berkeley-Trent North American contaminant fate model (BETR North America), a regionally segmented multimedia contaminant fate model based on the fugacity concept. The model is built on a framework that links contaminant fate models of individual regions, and is generally applicable to large, spatially heterogeneous areas. The North American environment is modeled as 24 ecological regions, within each region contaminant fate is described using a 7 compartment multimedia fugacity model including a vertically segmented atmosphere, freshwater, freshwater sediment, soil, coastal water and vegetation compartments. Inter-regional transport of contaminants in the atmosphere, freshwater and coastal water is described using a database of hydrological and meteorological data compiled with Geographical Information Systems (GIS) techniques. Steady-state and dynamic solutions to the 168 mass balance equations that make up the linked model for North America are discussed, and an illustrative case study of toxaphene transport from the southern United States to the Great Lakes Basin is presented. Regionally segmented models such as BETR North America can provide a critical link between evaluative models of long-range transport potential and contaminant concentrations observed in remote regions. The continent-scale mass balance calculated by the model provides a sound basis for evaluating long-range transport potential of organic pollutants, and formulation of continent-scale management and regulatory strategies for chemicals.

Air Movements↗

PubMed2004

Three new mussel tissue standard reference materials (SRMs) for the determination of organic contaminants.

Three new mussel tissue standard reference materials (SRMs) have been developed by the National Institute of Standards and Technology (NIST) for the determination of the concentrations of organic contaminants. The most recently prepared material, SRM 1974b, is a fresh frozen tissue homogenate prepared from mussels ( Mytilus edulis) collected in Boston Harbor, Massachusetts. The other two materials, SRMs 2977 and 2978, are freeze-dried tissue homogenates prepared from mussels collected in Guanabara Bay, Brazil and Raritan Bay, New Jersey, respectively. All three new mussel tissue SRMs complement the current suite of marine natural-matrix SRMs available from NIST that are characterized for a wide range of contaminants (organic and inorganic). SRM 1974b has been developed to replace its predecessor SRM 1974a, Organics in Mussel Tissue, for which the supply is depleted. Similarly, SRMs 2977 and 2978 were developed to replace a previously available (supply depleted) freeze-dried version of SRM 1974a, SRM 2974, Organics in Freeze-Dried Mussel Tissue. SRM 1974b is the third in a series of fresh frozen mussel tissue homogenate SRMs prepared from mussels collected in Boston Harbor starting in 1988. SRM 1974b has certified concentration values for 22 polycyclic aromatic hydrocarbons (PAHs), 31 polychlorinated biphenyl congeners (PCBs), and 7 chlorinated pesticides. Reference values are provided for additional constituents: 16 PAHs, 8 PCBs plus total PCBs, 6 pesticides, total extractable organics, methylmercury, and 11 trace elements. PAH concentrations range from about 2 ng g(-1 )dry mass (cyclopenta[ cd]pyrene) to 180 ng g(-1 )dry mass (pyrene). PCB concentrations range from about 2 ng g(-1 )dry mass (PCB 157) to 120 ng g(-1 )dry mass (PCB 153). The reference value for total PCBs in SRM 1974b is (2020 +/- 420) ng g(-1 )dry mass. Pesticide concentrations range from about 4 ng g(-1 )dry mass (4,4'-DDT) to 40 ng g(-1 )dry mass (4,4'-DDE). SRM 2977 has certified values for 14 PAHs, 25 PCB congeners, 7 pesticides, 6 trace elements, and methylmercury. Reference values for 16 additional PAHs and 9 inorganic constituents are provided, and information values are given for 23 additional trace elements. SRM 2978 has certified and reference concentrations for 41 and 22 organic compounds, respectively, and contains contaminant levels similar to those of SRM 1974b. Organic contaminant levels in SRM 2977 (mussels from Guanabara Bay, Brazil) are typically a factor of 2 to 4 lower than those in SRM 1974b and SRM 2978. The organic contaminant concentrations in each new mussel tissue SRM are presented and compared in this paper. In addition, a chronological review of contaminant concentrations associated with mussels collected in Boston Harbor is discussed as well as a stability assessment of SRM 1974a.

Animals↗

PubMed2002

Levels of environmental contaminants in human follicular fluid, serum, and seminal plasma of couples undergoing in vitro fertilization.

Environmental chemicals are thought to adversely affect human reproductive function, however there are no studies that have explored the association between failed fertilization and exposure of both partners to environmental contaminants. Therefore, we collected blood and follicular fluid from the female partner and seminal plasma from the male partner of 21 couples attending an in vitro fertilization (IVF) program, in order to determine the extent of the existence of environmental chemicals in these fluids. Any relationship to the outcome of IVF was also considered. Sera and fluids were analysed for a variety of contaminants, including polychlorinated biphenyls, pesticides, cotinine, and the steroids progesterone and estradiol. Of the couples examined, 18 had fertilizations, three of whom became pregnant. There were no fertilizations in three other couples. The contaminants most frequently found in follicular fluid, more than 50% of the samples tested, were p,p'-DDE, mirex, hexachloroethane, 1,2,4-trichlorobenzene, PCB 49, PCB 153, and PCB 180. Cadmium was detected in eight of 21 (38.1%) samples of follicular fluid whereas cotinine was detected in 18 (85.7%). Residue levels of p,p'-DDE, endosulfan I, PCB 99, PCB 138, PCB 153, PCB 180 were quantified in more than 50% of the sera samples examined. Seminal plasma was relatively free of pollutants with mirex being the most frequently detected contaminant found in seven of 21 (33.3%) samples. Mirex could not be detected in the seminal plasma of the husbands whose partner's oocytes failed to fertilize whereas significant levels of mirex were found in the seminal plasma of all couples who had a pregnancy. Cadmium was also found in the follicular fluid of these pregnant subjects. No relationship was found between follicular fluid cotinine in pregnant and non-pregnant subjects. Where identical contaminants were found in both sera and follicular fluids, the levels were about twofold higher in serum and were positively correlated in both fluids. Fertilization was negatively correlated with serum and follicular fluid p,p'-DDE whereas pregnancy was positively correlated with follicular fluid PCB 49. These data reveal that more than 50% of the population of women attending a fertility program have had exposure to environmental chemicals sufficient to produce detectable concentrations in their serum and ovarian follicular fluid. Of the chemical contaminants detected in the serum and follicular fluid of these women, p,p'-DDE was the most frequently detected, had the highest residue levels, and was associated with failed fertilization.

Adult↗

PubMed2003

Development of an in vitro digestion model for estimating the bioaccessibility of soil contaminants.

Soil ingestion can be a major route of human exposure to many immobile soil contaminants. The present risk assessment is based on toxicity studies in which contaminants are typically ingested in liquid or food matrices. The difference in bioavailability of contaminants ingested in a soil matrix is not taken into account. To become bioavailable, contaminants first need to become bioaccessible, i.e., they must be mobilized from the soil during digestion. Soil contaminants may be less bioaccessible than contaminants from liquid or food, so that the risks can be overestimated. This article describes the development of an in vitro human digestion model that is physiologically based. It can be used as a tool to assess bioaccessibility. We explain the rationale behind the experimental design of the model. We address the aspects of the simulated compartments of the gastrointestinal tract, temperature, soil-to-fluid ratio, ratio of digestive juices, transit times, centrifugation, pH values, mixing, constituents and their concentrations, and bile. The optimized in vitro digestion model was applied in a case study. The bioaccessibility of lead in pottery flakes with glazing was determined and compared to the bioaccessibility of lead in the soil from which the pottery flakes were removed. The data indicate that pottery flake lead is considerably less bioaccessible (0.3 +/- 0.2%) than lead in soil without pottery flakes (42-66% at the same site, and 28-73% at other sites in the same town). Furthermore, bioaccessibility values of lead in soil appear to be less than calculated bioaccessibility values for dietary lead (which are based on the criterion used by the Dutch risk assessment and on literature absorption data). This indicates that accounting for the matrix of ingestion can affect the exposure assessment for lead. The in vitro digestion model is a promising tool for studying the effect of the ingestion matrix on bioaccessibility.

Biological Availability↗

PubMed2004

Organochlorines in black-crowned night heron (Nycticorax nycticorax) eggs reflect persistent contamination in northeastern US estuaries.

Colonially nesting aquatic birds can indicate site-specific contamination because they are high-level predators and dependent upon local resources during the breeding season. We compared persistent organochlorine concentrations in black-crowned night heron (Nvcticorax nvcticorax) eggs collected in 1992-93 among areas of known contamination (New York Harbor, Boston Harbor, Cape Cod, and Delaware Bay) and a reference site (Nantucket Island) in the northeastern United States (7-16 eggs/site). Total PCBs, p,p'-DDE, oxychlordane, heptachlor epoxide, and trans-nonachlor were detected in most eggs and were significantly higher in New York Harbor compared to all other sites (ANOVA on factor scores from the first principal component, which accounted for 75% of data variance, p < 0.0001). New York also had the highest contamination index (the number of Superfund sites within 20 km of the colony) among the sites. Nantucket, the reference site, had consistently low contamination in eggs, and the lowest contamination index. We conclude that black-crowned night heron eggs are useful indicators of site-specific persistent organochlorine contamination, as indexed by the number of nearby Superfund sites.

Animals↗

PubMed2004

Characterization of land contaminated by past heavy metal mining using geostatistical methods.

Aspects of mining operations, including production, processing, transportation, and, finally, abandoned mine workings, can undoubtedly cause varying degrees of environmental pollution and contamination. Characterization of the spatial distribution of pollutants in contaminated soil is important for risk assessment and soil remediation. This study has been carried out using both conventional statistics and geostatistical methods which are useful for site assessment, characterization, and monitoring situations where data are collected spatially. These methods are particularly suited to cases where spatial dependence structure and contour maps of contaminant concentration or other variables are needed. The aims of this paper were to determine the extent and severity of the pollution levels on land contaminated by past mining activity through using geostatistical techniques, assess sampling strategy, and interpret data for potentially contaminated land. In the study, a total of 329 soil samples was collected at 1-, 5-, and 10-m regular grid intervals of 100 x 1 00-m area of Carsington Pasture in the UK and analyzed using an automatic X-ray fluorescence machine for a large number of elements. Only a few elements (Cu, Pb, Zn, and Ba) were subsequently studied in detail because of their association with the mining operation. Directional and omnidirectional experimental semivariograms of elements Cu, Pb, Zn, and Ba for 10-m grid intervals, pooled data of 10- and 5-m grid intervals (S10+5), and pooled data of 10-, 5-, and 1-m grid interval (S10+5+1) showed that neither geometric nor zonal anisotropy exits in the data. The most evident spatial dependence structure of the continuity for omnidirectional experimental semivariogram, characterized by a spherical model, of each element was obtained for the pooled data set of S10+5. Pooling 1-m grid data to S10+5 shaded the spatial dependence structure. The spherical model adopted for each element embodied no nugget effect, indicating that mineralization did not occur as nuggets in the study area, but it did show different ranges of influence and sill values. Spherical semivariogram model of each element for the pooled data set of S10+5 passed the cross validation tests. Graphs of cross validation test results proved that the isotropic spherical model, with its parameters and kriging search parameters, is representative for the area under study. The values of 10,000 grid nodes established regularly over the study area were estimated by kriging interpolation technique to smooth out the contours. Kriged maps for the Cu, Pb, Zn, and Ba elements were plotted. Anomalies such as bull's-eyes and drift did not observed in the maps generated. Contour maps of estimated element concentrations revealed the extent and severity of contamination. Spatial distribution maps of the elements might be used in the remediation studies and help decision-makers and others involved in the abandoned heavy metal mining site in the UK.

Data Interpretation, Statistical↗

PubMed2006

Induction of oxidative stress in erythrocytes of male rats subchronically exposed to a mixture of eight metals found as groundwater contaminants in different parts of India.

Exposure of animals and humans to different metal components through contaminated drinking water can result in a wide range of adverse clinical conditions. Toxicological consequences arising from the concurrent repeated exposure to multiple metal contaminants are not known. The purpose of the present study was to evaluate the oxidative stress-inducing potential of a mixture of eight metals (arsenic, cadmium, lead, mercury, chromium, nickel, manganese, iron), representative of groundwater contamination in different areas of India, in erythrocytes of male rats subchronically exposed to environmentally relevant doses via drinking water. The selection of these metals, as determined by literature survey of groundwater contamination in India, was primarily based on the frequency of their occurrence and contamination level above World Health Organization maximum permissible limit (MPL) in drinking water. Male albino Wistar rats were exposed to the metal mixture at 0, 1, 10, and 100 times the mode concentrations (the most frequently occurring concentration) of the individual metals in drinking water for 90 days. In addition, one group of rats was also exposed to the mixture at a concentration equal to the MPL of individual components. The oxidative stress in erythrocytes was evaluated by assessing the magnitude of malondialdehyde production and reduced glutathione (GSH) content and the activities of superoxide dismutase (SOD), catalase, glutathione peroxidase (GPx), and glutathione reductase (GR) after 30, 60, and 90 days of exposure. MPL and 1x dose levels did not cause any changes. The mixture at 10x and 100x doses caused dose- and time-dependent effects. After 30 days, the 10x dose did not cause any changes except increase in SOD activity. The 100x dose increased the activities of SOD, catalase and GR and the GSH level, but caused no alterations in lipid peroxidation (LPO) and GPx activity. After 60 days, the 10x dose did not cause any changes. The 100x dose increased LPO and decreased all the antioxidant parameters, except GSH. After 90 days, both 10x and 100x levels elevated LPO. The 10x dose decreased GSH level and activities of SOD and catalase, but not of GPx and GR, whereas the 100x dose decreased all the antioxidative systems. Overall, the present study demonstrates that the subchronic exposure of male rats to the mixture of metals via drinking water results in induction of oxidative stress and concomitant reduction in antioxidative defense system in erythrocytes at 10 and 100 times the mode concentrations of the individual metals in contaminated groundwater.

Administration, Oral↗

PubMed2001

Changes in contaminant levels in New Jersey osprey eggs and prey, 1989 to 1998.

Ospreys are good indicators of the health of estuarine areas because they feed almost exclusively on fish with the balance on other aquatic biota. Through the 1980s, ospreys nesting on Delaware Bay in New Jersey had reduced reproductive success relative to those nesting on the Atlantic coast and the Maurice River, a tributary of Delaware Bay. Earlier research suggested that elevated levels of DDT and polychlorinated biphenyl (PCB) contaminants identified in addled osprey eggs contributed to this reduced productivity. We repeated egg and prey sampling initially conducted in 1989 to evaluate the trends of contaminants in the last decade. Most organochlorine contaminants declined in osprey eggs in 1998 relative to 1989. Across three study areas, PCBs decreased from 4.1-7.7 ppm in 1989 to 1.8-3.2 ppm in 1998; DDE decreased from 1.2-3.2 ppm in 1989 to 0.7-1.2 ppm in 1998. Lead in eggs increased from an average of 0.01 to 0.30 ppm wet weight, and mercury averaged 0.12 ppm and increased only in Atlantic coast eggs. Most of these contaminant changes were also found in typical prey fish: PCBs decreased from 0.18-1.2 ppm in 1989 to 0.06-0.43 ppm in 1998; DDE decreased from 0.05-0.69 ppm in 1989 to 0.03-0.13 ppm in 1998. Lead and mercury increased in most fish samples. The improvement in most organochlorine contaminants in osprey eggs and prey reflected improved nest success in the Delaware Bay study area, and the nesting populations in the Atlantic and Maurice River study areas increased approximately 200% since 1989. PCBs and DDE in osprey eggs were below levels considered to be toxic to egg development. This study documents significant improvements in organochlorine contaminants in southern New Jersey ospreys, but justifies continued monitoring of heavy metals, such as lead and mercury, in aquatic ecosystems.

Animals↗

PubMed1998

Assessing the Bioaccumulation of Contaminants from Sediments of the Upper Mississippi River Using Field-Collected Oligochaetes and Laboratory-Exposed Lumbriculus variegatus

Concern with the redistribution of contaminants associated with sediment in the upper Mississippi River (UMR) arose after the flood of 1993. This project is designed to evaluate the status of sediments in the UMR and is one article in a series designed to assess the extent of sediment contamination in navigational pools of the river. Companion articles evaluate sediment toxicity and benthic community composition in navigation pools of the river. The objectives of the present study were to: (1) to assess the bioaccumulation of sediment-associated contaminants in the UMR using laboratory exposures with the oligochaete Lumbriculus variegatus, and (2) to compare bioaccumulation in laboratory-exposed oligochaetes to field-collected oligochaetes. Sediment samples and native oligochaetes were collected from 23 navigational pools on the Upper Mississippi River and the Saint Croix River. Contaminant concentrations measured in the L. variegatus after 28-day exposures to sediment in the laboratory were compared to contaminant concentrations in field-collected oligochaetes from the 13 pools where these sediments were collected. Contaminant concentrations were relatively low in sediments and tissues from the pools evaluated. Only polycyclic aromatic hydrocarbons (PAHs) and total polychlorinated biphenyls (PCBs) were frequently measured above detection limits. The majority of the biota-sediment-accumulation factors (BSAFs) for PAHs were within a range of about 1.0 to 2.6, suggesting that the theoretical BSAF value of 1.7 could be used to predict these mean BSAFs with a reasonable degree of certainty. A positive correlation was observed between lipid-normalized concentrations of PAHs detected in laboratory-exposed and field-collected oligochaetes across all sampling locations. Rank correlations for concentrations of individual compounds between laboratory-exposed and field-collected oligochaetes were strongest for benzo(e)pyrene, perylene, benzo(b,k)fluoranthene, and pyrene. About 90% of the paired PAH concentrations in laboratory-exposed and field-collected oligochaetes were within a factor of three of one another indicating laboratory results could be extrapolated to the field with a reasonable degree of certainty.

Journal Article↗

PubMed1999

Polychlorinated biphenyl- and mercury-associated alterations on benthic invertebrate community structure in a contaminated salt marsh in southeast Georgia.

The community structure of a benthic macroinvertebrate assemblage in a contaminated salt marsh was evaluated as part of an ecological characterization of a former chloralkali production facility in Georgia. Sample locations were chosen based on a gradient of the primary contaminants of concern, total mercury and polychlorinated biphenyls (PCBs), primarily Aroclor 1268. Sediment concentrations of Aroclor 1268 ranged from 2.3 to 150 mg/kg dry weight, while mercury concentrations ranged from 15 to 170 mg/kg dry weight in the study area. Mercury and PCBs were determined to be co-located in the sediments. Total organic carbon composition of the sediments was negatively associated with PCB and mercury concentrations. A total of 29 benthic taxa was identified in 49 samples; replicate samples were taken at each of five sampling locations. Mean infaunal density across all sampling locations was estimated at approximately 61,000 to 234,000 organisms m(-2). Overall, polychaetes comprised 57% of the infaunal community with Manayunkia aestuarina as the dominant species. Oligochaetes, nematodes, crustacea, insects, and gastropods comprised 23.0, 18.0, 1.0, 0.7, and 0.2% of the overall benthic community, respectively. Density estimates of individual species between sampling locations showed no consistent patterns in response to pollutants. However, an analysis of higher taxonomic levels revealed some general trends. In uncontaminated areas, the benthic community was dominated by nematodes and oligochaetes, whereas moderate to highly contaminated areas were dominated by polychaetes and a smaller percentage of oligochaetes and nematodes. A trophic analysis of the same data set revealed that the community shifted from an evenly distributed percentage of surface and subsurface feeders in the uncontaminated areas to a community dominated by surface feeders in the more contaminated locations. Carnivores comprised from 0.13 to 0.90% of the trophic structure, with the percentage of carnivores generally decreasing with increasing contamination. Mercury and PCBs were bioaccumulating in representative marsh benthic invertebrates, presenting a potential source of contaminants to marsh consumers. Tissue PCB and tissue mercury concentrations were positively related to sediment PCB and mercury concentrations, respectively. A standard 14-day toxicity test using the amphipod Leptocheirus plumulosus showed no acute toxicity across the sampling locations.

Animals↗

PubMed1999

Tidal creek and salt marsh sediments in South Carolina coastal estuaries: II. Distribution of organic contaminants.

Twenty-eight tidal creeks along the South Carolina coast were sampled during the summer of 1995 to determine the levels of sediment contamination including organic chemicals (i.e., polycyclic aromatic hydrocarbons [PAHs], polychlorinated biphenyls [PCBs], and DDT and its metabolites) associated with different types and varying levels of watershed development (i.e., industrial/urban, suburban, forested, and salt marsh). Organic analysis utilized high-performance liquid chromatography (HPLC) with fluorescence detection and capillary gas chromatography-ion trap mass spectrometry (GC-ITMS) for PAHs, and gas chromatography with electron capture detection (GC-ECD) for pesticides and PCBs. Results indicated that creeks with industrial/urban watersheds had significantly higher concentrations of PAHs, PCBs, and DDT compared with creeks with suburban and forested (reference) watersheds. The suburban watershed class of creeks had concentrations of half the PAH analytes and the total PCBs which exceeded the concentrations found in the forested watershed class of creeks. The spatial distribution of organic contaminants was evaluated in four of these tidal creek-salt marsh systems representing urban/industrial, suburban, and forested watersheds, from the creek channel to the adjacent uplands. The distribution of organic contaminants within each representative creek was not concordant with the total organic carbon or the clay content of the sediment. The representative industrial/urban creek-marsh system, Diesel Creek, had the highest concentration of PAHs in the creek channel and the highest concentration of PCBs and DDT on the marsh surface, primarily in the upper portion of the system. The representative suburban creek-marsh system, Shem Creek, had elevated levels of both PAHs and PCBs throughout the entire system. This system also had one site with a total PAH concentration of 324,000 ppb and a total DDT concentration that was 20-100 times higher than the other sites. One of the representative forested creek-marsh systems, Rathall Creek, had low levels of the three organic contaminants except for one sampling site that had PAH concentrations a factor of 10 higher than the other sites. The other representative forested creek-marsh system, Long Creek, had low levels of PAHs and PCBs, but elevated levels of DDT were observed, particularly in the upper portion on the marsh surface. The results of this study suggest that (1) anthropogenic alteration of the land cover in the watersheds of tidal creek-salt marsh systems may increase the organic contaminant loadings in the sediment, and (2) tidal creek-salt marsh sediments, particularly in the creek channel, are repositories and potentially conduits of organic contaminants from the upland environment to the deeper estuarine areas.http://link.springer-ny. com/link/service/journals/00244/bibs/37n4p458.html</++ +HEA

Chromatography, Gas↗

PubMed2004

A shallow BTEX and MTBE contaminated aquifer supports a diverse microbial community.

Microbial communities in subsurface environments are poorly characterized and the impacts of anthropogenic contamination on their structure and function have not been adequately addressed. The release of contaminant(s) to a previously unexposed environment is often hypothesized to decrease the diversity of the affected community. We characterized the structure of microbial communities along a gradient of benzene, toluene, ethylbenzene, and xylene (BTEX) and methyl-tert-butyl-ether (MTBE) contamination, resulting from a petroleum spill, within a shallow sandy aquifer at Vandenberg Air Force Base (VAFB) in Lompoc, CA. Differences in microbial community composition along the contaminant plume were assessed via a combinatorial approach utilizing denaturing gradient gel electrophoresis (DGGE), cloning and sequencing, intergenic transcribed spacer analysis (ITS), and comparative phylogenetic analysis of partial 16S rDNA sequences. Substantial bacterial sequence diversity, similar levels of species richness, and similar phylo-groups (including the Cytophaga-Flavobacterium-Bacteroidetes group and numerous members of the alpha-, beta-, gamma-, delta-, and epsilon-groups of the proteobacteria) were observed in both uncontaminated and contaminated regions of the aquifer. High-resolution measures (ITS fingerprinting and phylogenetic inference) readily separated communities impacted by the original petroleum spill (in source zone) from those in other parts of the aquifer and indicated that communities exposed to MTBE only were similar to communities in uncontaminated regions. Collectively, these data suggest that petroleum contamination alters microbial community structure at the species and subspecies level. Further study is required to determine whether these changes have an impact on the functioning of this subsurface ecosystem.

Bacteria↗

PubMed2005

Culture independent detection of Sphingomonas sp. EPA 505 related strains in soils contaminated with polycyclic aromatic hydrocarbons (PAHs).

The Sphingomonas genus hosts many interesting pollutant-degrading strains. Sphingomonas sp. EPA505 is the best studied polycyclic aromatic hydrocarbon (PAH)-degrading Sphingomonas strain. Based on 16S rRNA gene sequence analysis, Sphingomonas sp. strain EPA505 forms a separate branch in the Sphingomonas phylogenetic tree grouping exclusively PAH-degrading isolates. For specific PCR detection and monitoring of Sphingomonas sp. EPA505 and related strains in PAH-contaminated soils, a new 16S rRNA gene-based primer set was designed. The new primer set was shown to be highly selective for Sphingomonas sp. strain EPA505 as it only amplified DNA from strain EPA505 and not from other tested Sphingomonas strains or soil bacteria not belonging to the Sphingomonas genus. Using DNA extracts of a variety of inoculated PAH-contaminated soils, the primer pair was able to detect EPA505 in concentrations as low as 10(2) cells per gram of soil. Applying the new primer set, 16S rRNA gene fragments which were 99-100% similar to the corresponding gene of strain EPA505 were amplified from four of five PAH-contaminated soils. On the other hand, no PCR products were obtained from any of five tested uncontaminated soils. The preferential presence of EPA505 related Sphingomonas strains in PAH-contaminated soils with very different contamination profiles and different origin suggests an important role of this type of Sphingomonas in the natural Sphingomonas community colonizing PAH-contaminated sites.

Biodegradation, Environmental↗

PubMed2006

Microbial community analysis of soils contaminated with lead, chromium and petroleum hydrocarbons.

The impact on the microbial community of long-term environmental exposure to metal and organic contamination was investigated. Twenty-four soil samples were collected along a transect dug in soils contaminated with road paint and paint solvents, mainly toluene. Chemical analysis along the transect revealed a range from high to low concentrations of metals (lead and chromium) and organic solvent compounds. Principal components analysis of microbial community structure based on denaturing gradient gel electrophoresis of the V3 region of the 16S rRNA gene and fatty acid methyl esters derived from phospholipids (phospholipid fatty acid analysis) showing samples with similar fingerprints also had similar contaminant concentrations. There was also a weak positive correlation between microbial biomass and the organic carbon concentration. Results indicated that microbial populations are present despite some extreme contaminant levels in this mixed-waste contaminated site. Nucleotide sequence determination of the 16S rRNA gene indicated the presence of phylogenetically diverse bacteria belonging to the alpha-, beta-, gamma-, and delta-Proteobacteria, the high and low G + C Gram-positive bacteria, green nonsulfur, OP8, and others that did not group within a described division. This indicates that soils contaminated with both heavy metals and hydrocarbons for several decades have undergone changes in community composition, but still contain a phylogenetically diverse group of bacteria (including novel phylotypes) that warrant further investigation.

Bacteria↗

PubMed2000

Response of Antarctic Soil Bacterial Assemblages to Contamination by Diesel Fuel and Crude Oil.

The effects of diesel fuel and "Arabian light" crude oil addition on Antarctic bacterial assemblages were studied in four contaminated soils during 1 year in the Terre Adelie land area. Monthly sampling allowed a regular survey of the bacterial changes occurring in the contaminated soils. All samples were analyzed for total bacteria, heterotrophic culturable microbiota, and hydrocarbon-utilizing microbiota. Crude oil contamination induced an initial increase of all bacterial parameters in all contaminated soils. Diesel oil contamination had a more complex effect. Hydrocarbon degrading bacterial abundance increases occurred after diesel oil addition. In contrast, general heterotrophic bacterial abundance could significantly decrease in the same conditions. In all cases the stimulatory effects of oil addition disappeared after several months of contamination.

Journal Article↗

PubMed2005

Investigations of contaminated fluvial sediment deposits: merging of statistical and geomorphic approaches.

Concentrations of contaminants in sediment deposits can have large spatial variability resulting from geomorphic processes acting over long time periods. Thus, systematic (e.g., regularly spaced sample locations) or random sampling approaches might be inefficient and/or lead to highly biased results. We demonstrate the bias associated with systematic sampling and compare these results to those achieved by methods that merge a geomorphic approach to evaluating the physical system and stratified random sampling concepts. By combining these approaches, we achieve a more efficient and less biased characterization of sediment contamination in fluvial systems. These methods are applied using a phased sampling approach to characterize radiological contamination in sediment deposits in two semiarid canyons that have received historical releases from the Los Alamos National Laboratory. Uncertainty in contaminant inventory was used as a metric to evaluate the adequacy of sampling during these phased investigations. Simple, one-dimensional Monte Carlo simulations were used to estimate uncertainty in contaminant inventory. We also show how one can use stratified random sampling theory to help estimate uncertainty in mean contaminant concentrations.

Cesium Radioisotopes↗