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PubMed1978

Mode of coupling between the beta-adrenergic receptor and adenylate cyclase in turkey erythrocytes.

The mode of coupling of the beta-adrenergic receptor to the enzyme adenylate cyclase in turkey erythrocyte membranes was analyzed in detail. A number of experimental techniques have been used: (1) measurement of the kinetics of cyclase activation to its permanetly active state in the presence of guanylyl imidodiphosphate, as a function of hormone concentrations; (2) measurement of antagonist and agoinst binding to the beta-adrenergic receptor prior and subsequent to the enzyme activation by hormone and guanylyl imidodiphosphate. On the bases of these two approaches, all the models of receptor to enzyme coupling which involve an equilibrium between the enzyme and the receptor can be rejected. The binding and the kinetic data, however, can be fitted by two diametrically opposed models of receptor to enzyme coupling: (a) the precouped enzyme-receptor model where activation of the enzyme occurs, according to the following scheme: formula (see text) where H is the hormone, RE is the precoupled respetor-enzyme complex, k1 and k2 are the rate constants describing hormone binding, and k is the rate constant characterizing the formation of HRE' from the intermediate HRE. According to this model, the activated complex is composed of all of the interacting species. (b) The other model is the collision coupling mechanism: formula (see test) wheere KH is the horome-receptor dissociation constant, k1 is the bimolecular rate constant governing the formation of HRE, and k3 the rate constant governing the activation of the enzyme. In this case the intermediate never accumulates and constitutes only a small fraction of the total receptor and adenylate cyclase concentrations. In order to establish which of the two mechanisms governs the mode of adenylate cyclase activation by its receptor, a diagnostic experiment was performed: Progressive inactivation of the beta receptor by a specific affinity label was found to cause a decrease in the maximal binding capacity of the receptor and a proportional decrease in the rate of activation, but no change in the maximum level of activity was attained. Progressive inactivation of the enzyme by p-hydroxymercuribenzoate was found not to change the rate of activation nor the capacity of the receptor to bind hormone. Only the maximal level of activation was found to be decreased. These results are not compatible with the precoupled model of receptor and cyclase nor with floating receptor models in which an intermediate of hormone, receptor, and cyclase is in equilibrium with its reactants. The data strongly suggest that the collision coupling is the mode of coupling between the beta receptor and cyclase coupling in turkey erythrocyte membranes.

Adenylyl Cyclases↗

PubMed1998

Structure/function relationships of a G-protein coupling pocket formed by the third intracellular loop of the m5 muscarinic receptor.

Using random saturation mutagenesis, we have previously identified the amino acids K439, A440, and A441 in the C-terminus of the third intracellular loop (Ci3) of the m5 muscarinic receptor as being critical for G-protein coupling [Burstein, E. S., Spalding, T. A., Hill-Eubanks, D., and Brann, M. R. (1995) J. Biol. Chem. 270, 3141-3146]. In the present study, we have constructed a series of point mutants at each of these residues and characterized their functional phenotypes in order to define the structure/function relationships of each of these residues for G-protein coupling. Although a wide variety of substitutions were tolerated at K439, most caused significant increases in the EC50 of carbachol and decreases in the maximum response (Rmax). Only other basic residues were well tolerated (<10-fold increase in EC50, >70% of wild type). Acidic substitutions had the largest effects, reducing Rmax to under 20% of wild type. At A440, only the conservative substitution threonine was well tolerated. Substitutions by hydrophobic, polar, and basic residues caused 10-80-fold increases in EC50 values and in many cases also significantly reduced Rmax (<70% of wild type). In contrast, at A441 mutations selectively affected EC50 but not Rmax values. Previously we identified I216, Y217, T220, and R223 as the residues in the N-terminus of the i3 loop of m5 (Ni3) that are critical for G-protein coupling [Burstein, E. S., Spalding, T. S., and Brann, M. R. (1996) J. Biol. Chem. 271, 2882-2885]. To investigate whether there were additive contributions of Ni3 and Ci3 to G-protein coupling, the functional responses of two double mutants, R223E/K439E and Y217S/A441T, were evaluated. Though these mutations were tolerated individually, both double mutant receptors produced almost indetectable responses. Little or no changes in expression levels or ligand binding properties were detected, suggesting the observed effects were caused primarily by changes receptor/G-protein coupling. We conclude that K439 participates in G-protein activation through an ionic mechanism, that A440 fulfills a structural role forming part of the G-protein coupling pocket, and that A441 contributes to receptor affinity for G-proteins. We propose that the third intracellular loop forms a G-protein coupling pocket comprised of a positively charged "lip" and a hydrophobic core.

3T3 Cells↗

PubMed1999

Restricting the mobility of Gs alpha: impact on receptor and effector coupling.

The alpha-subunit of the stimulatory G protein, Gs, has been shown to dissociate from the plasma membrane into the cytosol following activation by G protein-coupled receptors (GPCR) in some experimental systems. This dissociation may involve depalmitoylation of an amino-terminal cysteine residue. However, the functional significance of this dissociation is not known. To investigate the functional consequence of Gs alpha dissociation, we constructed a membrane-tethered Gs alpha (tetGs alpha), expressed it in Sf9 insect cells, and examined its ability to couple with the beta(2) adrenoceptor and to activate adenylyl cyclase. Compared to wild-type Gs alpha, tetGs alpha coupled much more efficiently to the beta 2 adrenoceptor and the D1 dopamine receptor as determined by agonist-stimulated GTP gamma S binding and GTPase activity. The high coupling efficiency was abolished when Gs )alpha was proteolytically cleaved from the membrane tether. The membrane tether did not prevent the coupling of tetGS alpha to adenylyl cyclase. These results demonstrate that regulating the mobility of Gs alpha relative to the plasma membrane, through fatty acylation or perhaps interactions with cytoskeletal proteins, could have a significant impact on receptor-G protein coupling. Furthermore, by enabling the use of more direct measures of receptor-G protein coupling (GTPase activity, GTP gamma S binding), tetGS alpha can facilitate the study for receptor-G protein interactions.

Adenylyl Cyclases↗

PubMed2002

Peroxidase-catalyzed oxidative coupling of phenols in the presence of geosorbents: rates of non-extractable product formation.

Oxidative coupling processes in subsurface systems comprise a form of natural contaminant attenuation in which hydroxylated aromatic compounds (HACs) are incorporated into soil/sediment organic matter matrices. Here we describe the oxidative coupling of phenol catalyzed by horseradish peroxidase (HRP) in systems containing two geosorbents having organic matter of different composition; specifically Chelsea soil, a near-surface geologically young soil having a predominantly humic-type soil/sediment organic matter (SOM) matrix, and Lachine shale, a diagenetically older natural material having a predominantly kerogen-type SOM matrix. It was found that each of these two different types of natural geosorbents increased the formation of non-extractable coupling products (NEPs) over that which occurred in solids-free systems. The extent of coupling was higher in the systems containing humic-type Chelsea SOM than in those containing kerogen-type Lachine SOM. It was observed that HRP inactivation by free radical attack was significantly reduced in the presence of each geosorbent. A rate model was developed to facilitate quantitative evaluation and mechanistic interpretation of such coupling processes. Experimental rate measurements revealed thatthe greater extent of reaction observed in the presence of Chelsea soil than in the presence of Lachine shale can be attributed to two factors: (i) more effective protection of HRP from inactivation by the Chelsea SOM and (ii) the greater reactivity of Chelsea SOM with respect to cross-coupling. Interrelationships among enzyme protection, cross-coupling reactivity, and SOM chemistry are discussed.

Adsorption↗

PubMed2004

Interactions of soil-derived dissolved organic matter with phenol in peroxidase-catalyzed oxidative coupling reactions.

The influence of dissolved soil organic matter (DSOM) derived from three geosorbents of different chemical composition and diagenetic history on the horseradish peroxidase (HRP) catalyzed oxidative coupling reactions of phenol was investigated. Phenol conversion and precipitate-product formation were measured, respectively, by HPLC and radiolabeled species analysis. Fourier transform infrared (FTIR) spectroscopy and capillary electrophoresis (CE) were used to characterize the products of enzymatic coupling, and the acute toxicities of the soluble products were determined by Microtox assay. Phenol conversion and precipitate formation were both significantly influenced by cross-coupling of phenol with dissolved organic matter, particularly in the cases of the more reactive and soluble DSOMs derived from two diagenetically "young" humic-type geosorbents. FTIR and CE characterizations indicate that enzymatic cross-coupling in these two cases leads to incorporation of phenol in DSOM macromolecules, yielding nontoxic soluble products. Conversely, cross-coupling appears to proceed in parallel with self-coupling in the presence of the relatively inert and more hydrophobic DSOM derived from a diagenetically "old" kerogen-type shale material. The products formed in this system have lower solubility and precipitate more readily, although their soluble forms tend to be more toxic than those formed by dominant cross-coupling reactions in the humic-type DSOM solutions. Several of the findings reported may be critically important with respect to feasibility evaluations and the engineering design of associated remediation schemes.

Biodegradation, Environmental↗

PubMed2002

Interpretation of indirect nuclear spin-spin coupling tensors for polyatomic xenon fluorides and group 17 fluorides: results from relativistic density-functional calculations.

Significant improvements have been made recently in the calculation of NMR indirect nuclear spin-spin coupling tensors (J). In particular, the relativistic zeroth-order regular approximation density-functional theory (ZORA-DFT) approach holds great promise for the calculation of spin-spin coupling constants for a variety of chemical systems containing heavy nuclei. In the present work, the ZORA-DFT method is applied to the calculation of the complete reduced coupling tensors, K, for a range of chlorine-, bromine-, iodine-, and xenon-containing species: K(Cl,F) for ClF(2)(+), ClF(3), ClF(4)(+), ClF(5), ClF(6)(-), and ClF(6)(+); K(Br,F) for BrF(3), BrF(6)(-), and BrF(6)(+); K(I,F) for IF(4)(+) and IF(6)(+); K(Xe,F) for XeF(+), XeF(2), XeF(3)(+), XeF(4), XeF(5)(-), XeF(5)(+), and XeF(7)(+). These species represent a wide variety of geometrical bonding arrangements. Agreement between the calculated coupling constants and available experimental data is excellent, and the absolute sign of the coupling constants is provided. It is shown that (1)K(iso) may be positive or negative even within the same molecule, e.g., K(Cl,F)(iso) may be of either sign, depending on the local environment. Periodic trends in (1)K(iso) for isovalent and isostructural molecules are evident. The spin-spin coupling anisotropies, Delta K, and the orientations of the K tensors are also determined. The success of the calculations is a direct result of employing reliable geometries and considering both scalar and spin-orbit relativistic effects. The dependence of K(Cl,F)(iso) and K(Xe,F)(iso) on the local molecular and electronic structure is discussed in terms of the paramagnetic spin-orbit (PSO) and combined Fermi-contact spin-dipolar (FC+SD) coupling mechanisms. The PSO term depends strongly on the number of valence shell electron lone pairs on the central heavy atom, and the FC+SD contribution increases with the Cl[bond]F or Xe[bond]F bond length for a given series of compounds. This interpretation allows for the successful rationalization of the existing experimental data.

Journal Article↗

PubMed2003

A theoretical study of the large Hg-Hg spin-spin coupling constants in Hg(2)(2+), Hg(3)(2+), and Hg(2)(2+)-crown ether complexes.

Nuclear spin-spin coupling constants (1)J(Hg-Hg) in the systems Hg(2)(2+) and Hg(3)(2+) represent the largest coupling constants so far observed in NMR experiments. We have performed a computational study on these ions, on Hg(2)(2+) complexes with 18-crown-6 and 15-crown-5, and on Hg(3)(2+) with solvent molecules and counterions. The results obtained with our recently developed program for the density functional computation of heavy nucleus spin-spin coupling constants are in good agreement with experiments. The data reveal that the bare ions Hg(2)(2+) and Hg(3)(2+) would afford much larger coupling constants than those experimentally observed, with an upper limit of approximately 0.9 MHz for Hg(2)(2+). This limit is much larger than that previously estimated by Hückel theory. It is demonstrated that in solution or due to complexation the experimentally determined values are much smaller than the free ion's coupling constants. With the help of intuitive MO arguments, it is illustrated how the environment strongly reduces the coupling constants in Hg(2)(2+) and Hg(3)(2+). The two-bond coupling constant (2)J(Hg-Hg) in Hg(3)(2+) is also examined.

Journal Article↗

PubMed2003

Cluster-to-metal magnetic coupling: synthesis and characterization of 25-electron [Re6-nOsnSe8(CN)6](5-n)-(n = 1, 2) clusters and (Re6-nOsnSe8[CNCu(Me6tren)]6)9+(n = 0, 1, 2) assemblies.

The first face-capped octahedral clusters with 25 metal-based valence electrons are shown to provide versatile building units capable of engaging in magnetic exchange coupling. Reactions of [Re(5)OsSe(8)Cl(6)](3-) and [Re(4)Os(2)Se(8)Cl(6)](2-) with NaCN in a melt of NaNO(3) or KCF(3)SO(3) afford the 24-electron clusters [Re(5)OsSe(8)(CN)(6)](3-) and [Re(4)Os(2)Se(8)(CN)(6)](2-). The 13C NMR spectrum of a 13C-labeled version of the latter species indicates a 1:2 mixture of cis and trans isomers. Cyclic voltammograms of the clusters in acetonitrile display reversible [Re(5)OsSe(8)(CN)(6)](3-/4-), cis-[Re(4)Os(2)Se(8)(CN)(6)](2-/3-), and trans-[Re(4)Os(2)Se(8)(CN)(6)](2-/3-) couples at E(1/2) = -1.843, -0.760, and -1.031 V vs FeCp(2)(0/+), respectively, in addition to other redox processes. Accordingly, reduction of [Re(5)OsSe(8)(CN)(6)](3-) with sodium amalgam and [Re(4)Os(2)Se(8)(CN)(6)](2-) with cobaltocene produces the 25-electron clusters [Re(5)OsSe(8)(CN)(6)](4-) and [Re(4)Os(2)Se(8)(CN)(6)](3-). EPR spectra of these S = 1/2 species in frozen DMF solutions exhibit isotropic signals with g = 1.46 for the monoosmium cluster and g = 1.74 and 1.09 for the respective cis and trans isomers of the diosmium cluster. In each case, results from DFT calculations show the unpaired spin to delocalize to some extent into the pi* orbitals of the cyanide ligands, suggesting the possibility of magnetic superexchange. Reaction of [Re(5)OsSe(8)(CN)(6)](3-) with [Ni(H(2)O)(6)](2+) in aqueous solution generates the porous Prussian blue analogue Ni(3)[Re(5)OsSe(8)(CN)(6)](2).32H(2)O; however, the tendency of the 25-electron clusters to oxidize in water prohibits their use in reactions of this type. Instead, a series of cyano-bridged assemblies, [Re(6-n)Os(n)Se(8)[CNCu(Me(6)tren)](6)](9+) (n = 0, 1, 2; Me(6)tren = tris(2-(dimethylamino)ethyl)amine), were synthesized to permit comparison of the exchange coupling abilities of clusters with 23-25 electrons. As expected, the results of magnetic susceptibility measurements show no evidence for exchange coupling in the assemblies containing the 23- and 24-electron clusters, but reveal the presence of weak ferromagnetic coupling in [Re(4)Os(2)Se(8)[CNCu(Me(6)tren)](6)](9+). Assuming all cluster-Cu(II) exchange interactions to be equivalent, the data were fit to give an estimated coupling strength of J = 0.4 cm(-1). To our knowledge, the ability of such clusters to participate in magnetic exchange coupling has never previously been demonstrated.

Journal Article↗

PubMed2004

Electronic couplings in organic mixed-valence compounds: the contribution of photoelectron spectroscopy.

We show that the electronic coupling in strongly coupled organic mixed-valence systems can be effectively probed by means of gas-phase ultraviolet photoelectron spectroscopy (UPS). Taking six diamines as examples, the UPS estimates for the electronic couplings H(ab) are compared with the corresponding values determined from the intervalence charge-transfer absorption bands and from electronic structure calculations. Similar trends are observed for the H(ab) values estimated from UPS and optical spectra; this provides support for the applicability of Hush theory to strongly coupled organic mixed-valence systems. The UPS electronic couplings are found to be somewhat smaller than those from optical spectroscopy, which is attributed to the role of vibronic coupling to symmetrical modes; when corrected for this vibronic coupling, the UPS H(ab) estimates confirm that triarylamine-based mixed-valence systems are close to the class-II/class-III borderline.

Journal Article↗

PubMed2005

Geminal 2JCCH spin-spin coupling constants as probes of the phi glycosidic torsion angle in oligosaccharides.

Two-bond (13)C-(1)H NMR spin-spin coupling constants ((2)J(CCH)) between C2 and H1 of aldopyranosyl rings depend not only on the relative orientation of electronegative substituents on the C1-C2 fragment but also on the C-O torsions involving the same carbons. The latter dependencies were elucidated theoretically using density functional theory and appropriate model pyranosyl rings representing the four relative configurations at C1 and C2, and a 2-deoxy derivative, to probe the relationship between (2)J(C2,H1) magnitude and sign and the C1-O1 (phi, phi) and C2-O2 (alpha) torsion angles. Related calculations were also conducted for the reverse coupling pathway, (2)J(C1,H2). Computed J-couplings were validated by comparison to experimentally measured couplings. (2)J(CCH) displays a primary dependence on the C-O torsion involving the carbon bearing the coupled proton and a secondary dependence on the C-O torsion involving the coupled carbon. These dependencies appear to be caused mainly by the effects of oxygen lone pairs on the C-H and C-C bond lengths along the C-C-H coupling pathway. New parameterized equations are proposed to interpret (2)J(C1,H2) and (2)J(C2,H1) in aldopyranosyl rings. The equation for (2)J(C2,H1) has particular value as a potential NMR structure constraint for the C1-O1 torsion angle (phi) comprising the glycosidic linkages of oligosaccharides.

Carbon↗

PubMed2004

Determination of sugar structures in solution from residual dipolar coupling constants: methodology and application to methyl beta-D-xylopyranoside.

We have developed methodology for the determination of solution structures of small molecules from residual dipolar coupling constants measured in dilute liquid crystals. The power of the new technique is demonstrated by the determination of the structure of methyl beta-d-xylopyranoside (I) in solution. An oriented sample of I was prepared using a mixture of C(12)E(5) and hexanol in D(2)O. Thirty residual dipolar coupling constants, ranging from -6.44 to 4.99 Hz, were measured using intensity-based J-modulated NMR techniques. These include 15 D(HH), 4 (1)D(CH), and 11 (n)D(CH) coupling constants. The accuracy of the dipolar coupling constants is estimated to be < +/- 0.02 Hz. New constant-time HMBC NMR experiments were developed for the measurement of (n)D(CH) coupling constants, the use of which was crucial for the successful structure determination of I, as they allowed us to increase the number of fitted parameters. The structure of I was refined using a model in which the directly bonded interatom distances were fixed at their ab initio values, while 16 geometrical and 5 order parameters were optimized. These included 2 CCC and 6 CCH angles, and 2 CCCC and 6 CCCH dihedral angles. Vibrationally averaged dipolar coupling constants were used during the refinement. The refined solution structure of I is very similar to that obtained by ab initio calculations, with 11 bond and dihedral angles differing by 0.8 degrees or less and the remaining 5 parameters differing by up to 3.3 degrees . Comparison with the neutron diffraction structure showed larger differences attributable to crystal packing effects. Reducing the degree of order by using dilute liquid crystalline media in combination with precise measurement of small residual dipolar coupling constants, as shown here, is a way of overcoming the limitation of strongly orienting liquid crystals associated with the complexity of (1)H NMR spectra for molecules with more than 12 protons.

Carbohydrate Conformation↗

PubMed2006

Ferromagnetic coupling in hexanuclear gadolinium clusters.

The magnetic susceptibilities of hexanuclear gadolinium clusters in the compounds Gd(Gd6ZI12) (Z = Co, Fe, or Mn) and CsGd(Gd6CoI12)2 are reported and subjected to theoretical analysis with the help of density functional theory (DFT) computations. The single-crystal structure of Gd(Gd6CoI12) is reported here as well. We find that the compound with a closed shell of cluster bonding electrons, Gd(Gd6CoI12), exhibits the effects of antiferromagnetic coupling over the entire range of temperatures measured (4-300 K). Clusters with unpaired, delocalized cluster bonding electrons (CBEs) exhibit enhanced susceptibilities consistent with strong ferromagnetic coupling, except at lower temperatures (less than 30 K) where intercluster antiferromagnetic coupling suppresses the susceptibilities. The presence of two unpaired CBEs, as in [Gd6MnI12]3-, yields stronger coupling than when just one unpaired CBE is present, as in [Gd6FeI12]3- or [Gd6CoI12]2-. DFT calculations on model molecular systems, [Gd6CoI12](OPH3)6 and [Gd6CoI12]2(OPH3)10, indicate that the delocalized cluster bonding electrons are highly effective at mediating intracluster ferromagnetic exchange coupling between the Gd atom 4f7 moments and that intercluster coupling is expected to be antiferromagnetic. The DFT calculations were used to calculate the relative energies of various 4f7 spin patterns and form the basis for construction of a simple spin Hamiltonian describing the coupling within the [Gd6CoI12] cluster.

Journal Article↗

PubMed2006

Calculation of structural behavior of indirect NMR spin-spin couplings in the backbone of nucleic acids.

Calculated indirect NMR spin-spin coupling constants (J-couplings) between (31)P, (13)C, and (1)H nuclei were related to the backbone torsion angles of nucleic acids (NAs), and it was shown that J-couplings can facilitate accurate and reliable structural interpretation of NMR measurements and help to discriminate between their distinct conformational classes. A proposed stepwise procedure suggests assignment of the J-couplings to torsion angles from the sugar part to the phosphodiester link. Some J-couplings show multidimensional dependence on torsion angles, the most prominent of which is the effect of the sugar pucker. J-couplings were calculated in 16 distinct nucleic acid conformations, two principal double-helical DNAs, B- and A-, the main RNA form, A-RNA, as well as in 13 other RNA conformations. High-level quantum mechanics calculations used a baseless dinucleoside phosphate as a molecular model, and the effect of solvent was included. The predicted J-couplings correlate reliably with available experimental data from the literature.

Algorithms↗

PubMed1999

Sign determination of dipolar couplings in field-oriented bicelles by variable angle sample spinning (VASS).

Residual dipolar couplings are being increasingly used as structural constraints for NMR studies of biomolecules. A problem arises when dipolar coupling contributions are larger than scalar contributions for a given spin pair, as is commonly observed in solid state NMR studies, in that signs of dipolar couplings cannot easily be determined. Here the sign ambiguities of dipolar couplings in field-oriented bicelles are resolved by variable angle sample spinning (VASS) techniques. The director behavior of field-oriented bicelles (DMPC/DHPC, DMPC/CHAPSO) in VASS is studied by 31P NMR. A stable configuration occurs when the spinning angle is smaller than the magic angle, 54.7 degrees, and the director (or bicelle normal) of the disks is mainly distributed in a plane perpendicular to the rotation axis. Since the dipolar couplings depend on how the bicelles are oriented with respect to the magnetic field, it is shown that the dipolar interaction can be scaled to the same order as the J-coupling by moving the spinning axis from 0 degree toward 54.7 degrees. Thus the relative sign of dipolar and scalar couplings can be determined.

Anisotropy↗

PubMed1997

The calculation of frequency-shift functions for chains of coupled oscillators, with application to a network model of the lamprey locomotor pattern generator.

Chains of coupled limit-cycle oscillators are considered, in which the coupling is assumed to be weak and only between adjacent oscillators. For such a system the change in frequency of an oscillator due to the coupling can be expressed, up to first order in the coupling strength, by functions that depend only on the phase difference between the coupled oscillators. In this article a numerical algorithm is developed for the evaluation of these functions (the H-functions) in terms of a single oscillator and the interactions between coupled oscillators. The technique is applied to a connectionist model for the locomotor pattern generator in the lamprey spinal cord. An H-function so derived is compared to a function derived empirically (the C-function) from simulations of the same system. The phase lags that develop between adjacent oscillators in a simulated chain are compared with those predicted theoretically, and it is shown that coupling that is functionally "strong" is nonetheless weak enough to behave as predicted.

Animals↗

PubMed2001

Measurement and application of 1H-19F dipolar couplings in the structure determination of 2'-fluorolabeled RNA.

Residual dipolar couplings can provide powerful restraints for determination and refinement of the solution structure of macromolecules. The application of these couplings in nucleic acid structure elucidation can have an especially dramatic impact, since they provide long-range restraints, typically absent in NOE and J-coupling measurements. Here we describe sensitive X-filtered-E.COSY-type methods designed to measure both the sign and magnitude of long-range 1H-19F dipolar couplings in selectively fluorine labeled RNA oligonucleotides oriented in solution by a liquid crystalline medium. The techniques for measuring 1H-19F dipolar couplings are demonstrated on a 21-mer RNA hairpin, which has been specifically labeled with fluorine at the 2'-hydroxyl position of three ribose sugars. Experimentally measured 1H-19F dipolar couplings for the 2'-deoxy-2'-fluoro-sugars located in the helical region of the RNA hairpin were found to be in excellent agreement with values predicted using canonical A-form helical geometry, demonstrating that these couplings can provide accurate restraints for the refinement of RNA structures determined by NMR.

Chemical Phenomena↗

PubMed2002

A novel PH-cT-COSY methodology for measuring JPH coupling constants in unlabeled nucleic acids. application to HIV-2 TAR RNA.

A quantitative analysis of JPH scalar couplings in nucleic acids is difficult due to small couplings to phosphorus, the extreme overlap of the sugar protons and the fast relaxation of the spins involved in the magnetization transfer. Here we present a new methodology that relies on heteronuclear Constant Time Correlation Spectroscopy (CT-COSY). The three vicinal 3JPH3', 3JPHS' and 3JPHS" scalar couplings can be obtained by monitoring the intensity decay of the P1-H3'(i-1) peak as a function of the constant time T in a 2D correlation map. The advantage of the new method resides in the possibility of measuring the two 3JPH5' and 3JPH5" scalar couplings even in the presence of overlapped H5'/H5" resonances, since the quantitative information is extracted from the intensity decay of the P-H3' peak. Moreover, the relaxation of the H3' proton is considerably slower than that of the H5'/H5" geminal protons and the commonly populated conformations of the phosphate backbone are associated with large 3JPH3' couplings and relatively small 3JPH5'/H5". These two facts lead to optimal signal-to-noise ratio for the P-H3' correlation compared to the P-H5'/H5" correlation. The heteronuclear CT-COSY experiment is suitable for oligonucleotides in the 10-15 kDa molecular mass range and has been applied to the 30mer HIV-2 TAR RNA. The methodology presented here can be used to measure P-H dipolar couplings (DPH) as well. We will present qualitative results for the measurement of P-Hbase and P-H2' dipolar couplings in the HIV-2 TAR RNA and will discuss the reasons that so far precluded the quantification of the DPHS for the 30mer RNA.

Anisotropy↗

PubMed2003

Insertion of alpha1S II-III loop and C terminal sequences into alpha1H fails to restore excitation-contraction coupling in dysgenic myotubes.

The L-type Ca2+ channel in skeletal muscle (alpha1S) is essential for excitation-contraction (EC) coupling. Previous studies using chimeras composed of alpha1S together with alpha1C or alpha1M demonstrated the importance of the alpha1S II-III loop and of a smaller subdomain (residues 720-764; 'ECC') in skeletal EC coupling. However, these chimeras failed to test the significance of regions outside the II-III loop, which are highly conserved between alpha1S and alpha1C. Therefore, we have injected dysgenic (alpha1S-lacking) myotubes with cDNAs encoding chimeras between alpha1S and the highly divergent T-type Ca2+ channel, alpha1H. The chimeras consisted of GFP-tagged alpha1H with one or more of the following substitutions: alpha1S II-III loop residues 720-764 ('ECC'), a putative targeting domain of the alpha1S C terminus ('target'; residues 1543-1662) or the entire alpha1S C terminus ('Cterm'; residues 1382-1873). The presence of either target or Cterm affected the expression and/or kinetics of whole-cell currents recorded from both dysgenic muscle cells and tsa-201 cells. Importantly, substitution of ECC alone into GFP-alpha1H (GFP-alpha1H + ECC), or together with either target (GFP-alpha1H + ECC + target) or Cterm (GFP-alpha1H + ECC + Cterm), was insufficient to restore electrically evoked contractions. Depolarization-induced fluorescence transients for GFP-alpha1H + ECC, GFP-alpha1H + ECC + target or GFP-alpha1H + ECC + Cterm had a bell shaped dependence upon membrane voltage (inconsistent with skeletal EC coupling) and were also exceedingly small (unlike cardiac EC coupling). The absence of EC coupling for these chimeras raises the possibility that regions of alpha1S outside of ECC and target are necessary for providing the context that allows these two domains to function in EC coupling and targeting, respectively. Additionally, an inadequate membrane density of the chimeras may have contributed to the lack of coupling.

Analysis of Variance↗