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Results for “trajectory analysis”

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PubMed1992

The frontal eye field provides the goal of saccadic eye movement.

Microstimulation of oculomotor regions in primate cortex normally evokes saccadic eye movements of stereotypic directions and amplitudes. The fixed-vector nature of the evoked movements is compatible with the creation of either an artificial retinal or motor error signal. However, when microstimulation is applied during an ongoing natural saccade, the starting eye position of the evoked movement differs from the eye position at stimulation onset (due to the latency of the evoked saccade). An analysis of the effect of this eye position discrepancy on the trajectory of the eventual evoked saccade can clarify the oculomotor role of the structure stimulated. The colliding saccade paradigm of microstimulation was used in the present study to investigate the type of signals conveyed by visual, visuomovement, and movement unit activities in the primate frontal eye field. Colliding saccades elicited from all sites were found to compensate for the portion of the initial movement occurring between stimulation and evoked movement onset, plus a portion of the initial movement occurring before stimulation. This finding suggests that activity in the frontal eye field encodes a retinotopic goal that is converted by a downstream structure into the vector of the eventual saccade.

Animals↗

PubMed1975

Responses of primate dentate neurons to different trajectories of the limb.

The activity of neurons in the dentate nucleus of the squirrel monkey was studied during the execution of a controlled, sequential movement that required different trajectories of the forearm. Examination of 207 dentate neurons ipsilateral to the performing limb revealed that over 80% of the neurons isolated were distinctly correlated with performance. The majority of these neurons had a tonic discharge pattern that usually increased coincident with the start of the movement and was maintained throughout most of the performance. A smaller group of cells ahd a burst of activity that was restricted only to a narrow part of the performance. About 30% of the tonic neurons altered their pattern of discharge whenever different limb trajectories were required, but burst cells showed exxentially no change. Detailed analysis of spike patterns revealed that no dentate neurons were phasically correlated with individual flexion-extension cycles of the performance sequence. Dentate neurons appear to be related to some general function of motor performance rather than the actions of joints or muscles used to execute the task.

Animals↗

PubMed2005

Quaternion-based strap-down integration method for applications of inertial sensing to gait analysis.

The proposed strap-down integration method exploits the cyclical nature of human gait: during the gait swing phase, the quaternion-based attitude representation is integrated using a gyroscope from initial conditions that are determined during stance by an accelerometer. Positioning requires double time integration of the gravity-compensated accelerometer signals during swing. An interpolation technique applied to attitude quaternions was developed to improve the accuracy of orientation and positioning estimates by accounting for the effect of sensor bias and scale factor drifts. A simulation environment was developed for the analysis and testing of the proposed algorithm on a synthetic movement trajectory. The aim was to define the true attitude and positioning used in the computation of estimation errors. By thermal modelling, the changes of bias and scale factor of the inertial sensors, calibrated at a single reference temperature, were analysed over a range of +/- 10 degrees C, for measurement noise standard deviations up to sigma(g) = 2.5 degrees s(-1) (gyroscope) and sigma(a) = 0.05 m s(-2) (accelerometer). The compensation technique reduced the maximum root mean square errors (RMSEs) to: RMSE(theta) = 14.6 degrees (orientation) and RMSE(d) = 17.7cm (positioning) for an integration interval of one gait cycle (an improvement of 3 degrees and 7 cm); RMSE(theta) = 14.8 degrees and RMSE(d) = 30.0 cm for an integration interval of two gait cycles (an improvement of 11 degrees and 262 cm).

Acceleration↗

PubMedDate not supplied

Three-channel Lissajous' trajectories of auditory event-related potentials to target stimuli.

Three orthogonal recordings ('X,' 'Y' and 'Z') of event-related potentials (ERPs) evoked by auditory target stimuli were represented in 3-dimensional voltage-space, to produce 3-channel Lissajous' trajectories (3-CLTs). Stimuli were verbal or non-verbal and were differentiated by their pitch, phonemic or phonetic attributes. Visual inspection and quantitative evaluations unexpectedly revealed that the 3-CLT of these ERPs strongly resembles a 'hair-pin' trajectory. This trajectory titled in space at characteristic angles with each of the analysis axes: 133 degrees with the 'X' axis, 87 degrees with the 'Y' axis, and 54 degrees with the 'Z' axis. The relatively small inter-subject variability observed in the geometrical measures, particularly in orientation, may be attributed to the slight variation in the underlying generators. 3-CLT analysis could be useful in future clinical as well as source studies of ERP generators.

Acoustic Stimulation↗

PubMed2006

[Effects of rigid-ankle and ankle-foot orthoses in the control of asymetrical undisturbed upright stance].

OBJECTIVE: To limit sensorimotor impairment associated with various diseases, devices aimed at easing such impairment are usually prescribed. A better knowledge of the specific effects of these devices in healthy subjects should help to assess the prescription. MATERIALS AND METHODS: Sixteen young healthy individuals were required to stand still on a double-force platform with an asymmetrical body weight distribution over the 2 legs and to reduce as much as possible their motions. Four conditions (1 used as reference without any orthosis and 3 with an ankle orthosis and 2 soft [ORP-S] and rigid [ORP-R] ankle-foot orthoses) were performed randomly. For each condition, 6 repetitions lasting 32 s were recorded. The centre-of-pressure trajectories from the loaded (CP(Cha)) and unloaded (CP(Déc)) feet and the resulting displacements (CP(Res)) were then computed along both the mediolateral (ML) and anteroposterior (AP) axes. Finally, these trajectories were analysed by their mean positions and parameters (Root Mean Square and Median Frequency) aimed at characterising their frequency spectra. RESULTS: Wearing the ORP-R model resulted in a backward shift of the mean position of the CP(Déc) trajectories, which had repercussions on CP(Res) values. In addition, frequency analysis showed decreased RMS for only the CP(Déc). DISCUSSION-CONCLUSION: We found effects linked to the physical features of various ankle orthoses tested. These effects can be observed because of the separate measure of the unloaded support. This data should improve the prescription of ankle-foot orthoses according to patient needs. These results should be viewed as a first step before their extension to study of patients with hemiparalysis, to improve their prescription in accordance with such patients' needs.

Adult↗

PubMed2005

Studies on the acute biochemical effects of La(NO3)3 using 1H NMR spectroscopy of urine combined with pattern recognition.

(1)H NMR spectroscopic and pattern recognition-based methods were applied to the studies on the acute biochemical effects of La(NO(3))(3). Male Wistar rats were separated into groups (n=10) and each was treated with one of following compounds, sodium chromate (NaCrO(4)), mercury II chloride (HgCl(2)), 2-bromoethanamine hydrobromide (BEA), carbon tetrachloride (CCl(4)), hydrazine (HYD), alpha-naphthylisothiocyanate (ANIT), and three doses of La(NO(3))(3). Urine samples were collected over a 48-h time course and measured by 600 MHz NMR spectroscopy. Each spectrum was data-processed to provide 205 intensity-related descriptors used as input coordinates in a multidimensional space and analyzed by pattern recognition method. By NMR and principal components analysis (PCA) methods, the biochemical effects classification and time-course trajectories of various doses of La(NO(3))(3) were achieved. The toxicity of La(NO(3))(3) was similar to that of carbon tetrachloride according to the (1)H NMR spectral profiles and toxicity classification. This work illustrates the high reliability of NMR-PR method using (1)H NMR spectroscopy for the exploration and prediction of biochemical effects of rare earths in rats.

1-Naphthylisothiocyanate↗

PubMed2005

Molecular insight into pseudolysin inhibition using the MM-PBSA and LIE methods.

Pseudolysin, the extracellullar elastase of Pseudomonas aeruginosa (EC: 3.4.24.26) plays an important role in the pathogenesis of P. aeruginosa infections. In the present study, molecular dynamics simulations and theoretical affinity predictions were used to gain molecular insight into pseudolysin inhibition. Four low molecular weight inhibitors were docked at their putative binding sites and molecular dynamics (MD) simulations were performed for 5.0 ns, and the free energy of binding was calculated by the linear interaction energy method. The number and the contact surface area of stabilizing hydrophobic, aromatic, and hydrogen bonding interactions appears to reflect the affinity differences between the inhibitors. The proteinaceous inhibitor, Streptomyces metalloproteinase inhibitor (SMPI) was docked in three different binding positions and MD simulations were performed for 3.0 ns. The MD trajectories were used for molecular mechanics-Poisson-Boltzmann surface area analysis of the three binding positions. Computational alanine scanning of the average pseudolysin-SMPI complexes after MD revealed residues at the pseudolysin-SMPI interface giving the main contribution to the free energy of binding. The calculations indicated that SMPI interacts with pseudolysin via the rigid active site loop, but that also contact sites outside this loop contribute significantly to the free energy of association.

Amino Acid Sequence↗

PubMed2000

Comparison of different calculations of three-dimensional joint kinematics from video-based system data.

When skin-fixed marker trajectories are used to calculate 3D joint kinematics, the measurement errors (i.e. the difference between the trajectories of the external markers and those of the skeleton) influence to some extent the accuracy of the results, depending both on the calculation method and on the axes about which the rotations are expressed. The purpose of this paper is to compare several expressions of joint angular variations. Two kinematic concepts are used to calculate the changes in the orientation of the distal segment versus the proximal one: the first method consists of computing the components of the spatial attitude vector, the second one deals with the determination of elementary rotations about successive axes. For each of these methods, two sets of three axes are tested to express the results: the axes forming the reference frame affixed to the body segment adjacent to the joint (named fixed axes), and a set consisting of a first axis belonging to the proximal segment, a third axis belonging to the distal segment and a second (floating) axis defined as the cross-product between the two other ones (named mobile axes). To compare these four distinct expressions on the knee joint, numerical simulations of perturbed skin marker trajectories are performed, based on experimental data recorded by a Motion Analysis system during a normal gait cycle. A significant difference is pointed out only for the internal-external rotation angle, for which the best expression - from the viewpoint of sensitivity to experimental errors - is obtained using the components of the attitude vector in a segment-embedded reference frame.

Adult↗

PubMed1997

Load compensation tasks evoke tremor in cerebellar patients: the possible role of long latency stretch reflexes.

'Tremor' is one of the clinical signs of cerebellar dysfunction. Its nature remains subject to debate, one hypothesis being that of a predominant role of peripheral afferences in its genesis. This study was designed to study whether load compensating tasks, evoking sudden stretch, and thus stimulation of peripheral afferences induced tremor in cerebellar patients. We study the kinematics and EMG pattern of a load compensating task which consists of maintaining a constant elbow position despite the onset and cessation of a 2 Nm torque loading the elbow flexors in eight cerebellar patients and six controls. Angular position and velocity, and EMG of the biceps and triceps are recorded at a sampling rate of 1 kHz. In normal subjects, trajectories are simple with little overshoot of the aimed position. EMG analysis shows a long latency stretch response (LLSR) which initiates a phasic and then tonic voluntary activity. In cerebellar patients, the two prominent cinematic features are hypermetria and tremor. The stretch response is of the same latency, but the EMG pattern is modified with bursts of activity related to the tremor. These results show severe perturbations of load compensating tasks in cerebellar patients. We discuss the possible role of the exaggeration of LLSR in both hypermetria and tremor.

Case-Control Studies↗

PubMed1998

Nuclear magnetic resonance spectroscopic and principal components analysis investigations into biochemical effects of three model hepatotoxins.

1H NMR spectroscopy of urine combined with pattern recognition (PR) methods of data analysis has been used to investigate the time-related biochemical changes induced in Sprague-Dawley rats by three model hepatotoxins: alpha-naphthyl isothiocyanate (ANIT), d-(+)-galactosamine (GalN), and butylated hydroxytoluene (BHT). The development of hepatic lesions was monitored by conventional plasma analysis and liver histopathology. Urine was collected continuously postdosing up to 144 h and analyzed by 600-MHz 1H NMR spectroscopy. NMR spectra of the urine samples showed a number of time-dependent perturbations of endogenous metabolite levels that were characteristic for each hepatotoxin. Biochemical changes common to all three hepatotoxins included a reduction in the urinary excretion of citrate and 2-oxoglutarate and an increased excretion of taurine and creatine. Increased urinary excretion of betaine, urocanic acid, tyrosine, threonine, and glutamate was characteristic of GalN toxicity. Both GalN and ANIT caused increased urinary excretion of bile acids, while glycosuria was evident in BHT- and ANIT-treated rats. Data reduction of the NMR spectra into 256 integrated regions was used to further analyze the data. Mean values of each integrated region were analyzed by principal components analysis (PCA). Each toxin gave a unique time-related metabolic trajectory that could be visualized in two-dimensional PCA maps and in which the maximum distance from the control point corresponded to the time of greatest cellular injury (confirmed by conventional toxicological tests). Thereafter, the metabolic trajectories changed direction and moved back toward the control region of the PR map during the postdose recovery phase. The combination of urinary metabolites which were significantly altered at various time points allowed for differentiation between biliary and parenchymal injury. This NMR-PR approach to the noninvasive detection of liver lesions will be of value in furthering the understanding of hepatotoxic mechanisms and assisting in the discovery of novel biomarkers of hepatotoxicity.

1-Naphthylisothiocyanate↗

PubMed1999

Functional asymmetries in the quality of handwriting movements: a kinematic analysis.

Writing hand preference is a prominent functional asymmetry, but biomechanical factors may also contribute to any kinematic differences in the quality of handwriting movements performed by either hand. Eighteen dextral participants used a noninking pen with their right or left hand to write cursive letter ls, inverted ls, and their mirror images (to control for biomechanical differences) on a graphics tablet. Kinematic analysis of the scaling, consistency, efficiency, and shape of writing stroke trajectories revealed functional asymmetries between hands. The right hand was faster and produced more efficient strokes, which were of more consistent length, duration, and peak velocity. Differences between hands do not simply reflect biomechanical factors; therefore, the documentation of any functional asymmetries may allow their subsequent use as markers of underlying pathology in conditions such as schizophrenia.

Adolescent↗

PubMed2005

Molecular motions of human cyclin-dependent kinase 2.

We present a comprehensive description of the dynamic behavior of CDK2 in complex with cyclin A, arrived at by analysis of a total of 0.25 micros of solvated molecular dynamics trajectories and 42 deposited CDK2 structures, and refined using other protein simulation algorithms. The CDK2-cyclin A dimer is a dynamic complex of 6 subdomains. Thermal motions are dominated by a relative twisting of the two monomers. The predominant motion within CDK2 is a "breathing" of the N-terminal and C-terminal lobes. The N-terminal lobe of cyclin A is tightly linked to the "PSTAIRE" helix of CDK2 to provide a rigid nucleus to the complex. By contrast, the "CDK-insert" region (residues 219-251) sometimes becomes highly mobile, a behavior that is observed in crystallographic analyses of CDK2 structures and that may relate to its role in recognizing diverse binding partners. We find that the three arginines that anchor phosphothreonine 160 of fully active CDK2 do not contribute equally to structural stabilization. This observation is supported by a survey of protein kinase sequences. We have also explored the physical basis of the role of the phosphate moiety in signaling by artificially modifying the charge of phosphothreonine 160 in molecular dynamics simulations. We find that phosphothreonine binding involves an active process of attraction in which both the receptor site (the arginine triad), and the phosphothreonine have a higher charge than is required to maintain an active conformation once formed. We have deposited our dynamics data to aid protein kinase inhibitor design.

Adenosine Triphosphate↗

PubMed1998

Physical symptom trajectories following trauma exposure: longitudinal findings from the normative aging study.

This study modeled physical symptom trajectories from ages 30 to 75 in 1079 older male military veterans who were assessed every 3 to 5 years since the 1960s. Combat exposure and noncombat trauma were used to define four groups: no trauma (N = 249), noncombat trauma only (N = 333), combat only (N = 152), and both combat and noncombat trauma (N = 345). Number of symptoms on the Cornell Medical Index physical symptom scale increased 29% per decade. Men who had experienced either combat or noncombat trauma did not differ from nonexposed men, but those who had experienced both combat and noncombat trauma had 16% more symptoms across all ages. There were no differences in age-related trajectories as a function of trauma history. In cross-sectional analysis, men with combat and noncombat trauma had more posttraumatic stress disorder symptoms, but not more depression symptoms, than men with either no trauma or noncombat trauma only. Discussion focuses on the importance of considering physical as well as psychological outcomes of exposure to traumatic events.

Adult↗

PubMed2006

Marine animal behaviour: neglecting ocean currents can lead us up the wrong track.

Tracks of marine animals in the wild, now increasingly acquired by electronic tagging of individuals, are of prime interest not only to identify habitats and high-risk areas, but also to gain detailed information about the behaviour of these animals. Using recent satellite-derived current estimates and leatherback turtle (Dermochelys coriacea) tracking data, we demonstrate that oceanic currents, usually neglected when analysing tracking data, can substantially distort the observed trajectories. Consequently, this will affect several important results deduced from the analysis of tracking data, such as the evaluation of the orientation skills and the energy budget of animals or the identification of foraging areas. We conclude that currents should be systematically taken into account to ensure the unbiased interpretation of tracking data, which now play a major role in marine conservation biology.

Animals↗

PubMed2004

Diffusion of hard sphere fluids in disordered media: a molecular dynamics simulation study.

Molecular dynamic simulations are reported for the static and dynamic properties of hard sphere fluids in matrices (or media) composed of quenched hard spheres. The effect of fluid and matrix density, matrix structure, and fluid to matrix sphere size ratio on the static and dynamic properties is studied using discontinuous molecular dynamics. The matrix density has a stronger effect on the self-diffusion coefficient than the fluid density, especially at high matrix densities where the geometric constraints due to the quenched spheres are significant. When the ratio of the size of the fluid spheres to that of the matrix spheres is equal to or greater than one, the diffusion increases as the fluid density is increased, at constant total volume fraction. This trend is however reversed if the ratio is smaller than one. Different methods of generating the matrix have a very strong effect on the dynamic properties even though the static correlations are similar. An analysis of the single-chain structure factor of the particle trajectories shows a change in the particle diffusive behavior at different time scales, suggestive of a hopping mechanism, although normal diffusion is recovered at long times. At high matrix densities, there is considerable heterogeneity in the diffusion of the fluid particles. The simulations demonstrate that the correlations in the matrix play a significant role on the diffusion of fluid spheres. For example, the diffusion constant in matrices constructed by different methods can be an order of magnitude different even though the pair correlation functions are almost identical.

Journal Article↗

PubMed2004

Trapping a 96 degrees domain rotation in two distinct conformations by engineered disulfide bridges.

Engineering disulfide bridges is a common technique to lock a protein movement in a defined conformational state. We have designed two double mutants of Escherichia coli 5'-nucleotidase to trap the enzyme in both an open (S228C, P513C) and a closed (P90C, L424C) conformation by the formation of disulfide bridges. The mutant proteins have been expressed, purified, and crystallized, to structurally characterize the designed variants. The S228C, P513C is a double mutant crystallized in two different crystal forms with three independent conformers, which differ from each other by a rotation of up to 12 degrees of the C-terminal domain with respect to the N-terminal domain. This finding, as well as an analysis of the domain motion in the crystal, indicates that the enzyme still exhibits considerable residual domain flexibility. In the double mutant that was designed to trap the enzyme in the closed conformation, the structure analysis reveals an unexpected intermediate conformation along the 96 degrees rotation trajectory between the open and closed enzyme forms. A comparison of the five independent conformers analyzed in this study shows that the domain movement of the variant enzymes is characterized by a sliding movement of the residues of the domain interface along the interface, which is in contrast to a classical closure motion where the residues of the domain interface move perpendicular to the interface.

5'-Nucleotidase↗

PubMed1979

Noradrenergic innervation of cerebral cortex: widespread effects of local cortical lesions.

The trajectory of the intracortical noradrenergic fibers has been characterized by histochemical analysis following the production of cortical lesions in the rate. A large group of noradrenergic fibers enters the cortex at the frontal pole and proceeds caudally through the deep layers of dorsolateral cortex. Branches arise from these longitudinally directed fibers and form a uniform pattern of innervation throughout lateral cortex. Because these fibers travel long distances rostrocaudally within the gray matter, a large area of cortex can be deprived of noradrenergic innervation by a relatively small lesion of frontal cortex. The medial and lateral cortex can be selectively and differentially denervated of noradrenergic fibers, and there is a medial to lateral topographic relationship between deep longitudinally running fibers and overlying cortex.

Animals↗

PubMed2006

A low protein diet increases the hypoxic tolerance in Drosophila.

Dietary restriction is well known to increase the life span of a variety of organisms from yeast to mammals, but the relationships between nutrition and the hypoxic tolerance have not yet been considered. Hypoxia is a major cause of cell death in myocardial infarction and stroke. Here we forced hypoxia-related death by exposing one-day-old male Drosophila to chronic hypoxia (5% O(2)) and analysed their survival. Chronic hypoxia reduced the average life span from 33.6 days to 6.3 days when flies were fed on a rich diet. A demographic analysis indicated that chronic hypoxia increased the slope of the mortality trajectory and not the short-term risk of death. Dietary restriction produced by food dilution, by yeast restriction, or by amino acid restriction partially reversed the deleterious action of hypoxia. It increased the life span of hypoxic flies up to seven days, which represented about 25% of the life time of an hypoxic fly. Maximum survival of hypoxic flies required only dietary sucrose, and it was insensitive to drugs such as rapamycin and resveratrol, which increase longevity of normoxic animals. The results thus uncover a new link between protein nutrition, nutrient signalling, and resistance to hypoxic stresses.

Amino Acids↗