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Solution conformation of c-[Gln-Trp-Phe-Gly-Leu-Met], a NK-2 tachykinin antagonist.

The conformation of cyclo-[Gln-Trp-Phe-Gly-Leu-Met], a potent tachykinin antagonist selective for the NK-2 receptor, has been studied by 1H NMR spectroscopy in DMSO-d6 and in a DMSO-d6/H2O cryoprotective mixture in the temperature range 280-320 K. The NMR data cannot be interpreted on the basis of a single ordered conformation. An exhaustive search, based mainly on missing NOEs among skeleton protons, yields a description of the conformational state in solution consisting of a few interconverting structures that can explain all observed NMR parameters. The relative position of the side chains of key residues may be interpreted in terms of bioactive conformations.

Amino Acid Sequence↗

Suggestions for the presentation of quality of life data from clinical trials.

Quality of life (QOL) data is complex since it is both multidimensional and longitudinal. This complexity is compounded with its unbalanced nature through missing observations as a consequence of patient non-compliance with assessment schedules, and, for example, in cancer clinical trials data absence due to patient attrition often through death. QOL data poses difficulties for presentation and analysis and hence interpretation. This paper illustrates, using data from a randomized trial of the United Kingdom Medical Research Council Lung Cancer Working Party, a step-by-step approach to presentation of QOL data. This begins with a description of compliance and its relationship with patient attrition caused by death, to a final summary profile to indicate change over time. We recognize that no single summary statistic is likely to be able to encapsulate all the subtleties of QOL data. We stress the importance of examining data graphically before performing detailed analysis and also to facilitate interpretation in the final clinical report. Although a description of analytical methods is not the purpose of this paper, we draw attention to the need for imputing missing values and to the (multi-level) modelling approach to summarizing the data, both essential adjuncts to the less formal methods described here.

Authorship↗

Radiographic patterns of pulmonary disease.

Pulmonary radiographs are essential adjuncts to the evaluation and diagnosis of suspected pulmonary disease. In the intensive care unit, radiographs are useful to confirm correct positioning of diagnostic and therapeutic devices. Patterns seen on the radiograph may be within broadly normal limits or may be interpreted as abnormal, especially when placed in the clinical context of a specific patient's problem. The description abnormal can be related to both nonspecific and specific radiographic patterns of disease. Nonspecific radiographic patterns of disease include location of disease, temporal course of disease, pleural abnormalities, hyperinflation, extra-alveolar air, atelectasis, bronchiectasis, and vascular disease. Specific radiographic patterns of disease are discrete anatomic structures seen on a radiograph, for example, cavitary and cystic disease. The interpretation of nonspecific and specific radiographic patterns is useful in diagnosis, selection of treatment, and monitoring of the course of disease and the patient's response to treatment.

Air↗

Radiographic patterns of pulmonary disease.

Pulmonary radiographs are essential adjuncts to the evaluation and diagnosis of suspected pulmonary disease. In the intensive care unit, radiographs are useful to confirm correct positioning of diagnostic and therapeutic devices. Patterns seen on the radiograph may be within broadly normal limits or may be interpreted as abnormal, especially when placed in the clinical context of a specific patient's problem. The description abnormal can be related to both nonspecific and specific radiographic patterns of disease. Nonspecific radiographic patterns of disease include location of disease, temporal course of disease, pleural abnormalities, hyperinflation, extra-alveolar air, atelectasis, bronchiectasis, and vascular disease. Specific radiographic patterns of disease are discrete anatomic structures seen on a radiograph, for example, cavitary and cystic disease. The interpretation of nonspecific and specific radiographic patterns is useful in diagnosis, selection of treatment, and monitoring of the course of disease and the patient's response to treatment.

Diagnosis, Differential↗

Two-dimensional, gray-scale abdominal ultrasonography. General interpretation and abdominal masses.

The techniques of and general interpretive principles of gray-scale, two-dimensional abdominal ultrasonography in small animals are described. Using case examples, commonly encountered imaging artifacts and categories of disease are integrated with a description of what was obtained by radiography. Tissue echogenicity as a basis for general assessment of organ abnormalities as well as the expectations (interpretive and prognostic) one should have of abdominal ultrasonography are presented.

Abdomen↗

Thermodynamic mechanism and consequences of the polyproline II (PII) structural bias in the denatured states of proteins.

A quantitative characterization of the structure and energy of the denatured states of proteins represents the cornerstone to a molecular-level understanding of both protein stability and fold specificity. Recent studies have revealed a significant bias in unstructured peptides toward the polyproline II (P(II)) conformation, even when no prolines are present in the sequence. This indicates that the P(II) conformation is a dominant component of the denatured states of proteins, although a quantitative description of the component enthalpy and entropy functions associated with this conformation (i.e., the thermodynamic mechanism) has thus far proven elusive. An experimental system has been designed that, when analyzed with high-precision isothermal titration calorimetry, provides direct access to the residue-specific thermodynamics of the P(II) structure formation in disordered proteins and peptides. Here, it is shown that the P(II) bias is driven by a favorable and significant enthalpy (Deltah) of -1.7 kcal mol(-1) residue(-1), which is partially offset by an unfavorable entropy (TDeltas) of -0.7 kcal mol(-1) residue(-1), relative to the ensemble of disordered conformations of the molecule. In addition to impacting dramatically the interpretation of thermal denaturation experiments, these experimental values form the framework of a quantitative energetic description of the denatured states of proteins.

Animals↗

Aetiology of intersexuality in female (XX) pigs, with novel molecular interpretations.

This review considers the problem of ovotestis formation in animals of 38,XX chromosome complement. After a clinical description, attention focuses on the condition of the gonads and genital tract. A complete spectrum of gonadal types has been found, ranging from a single ovotestis almost invariably on the right-hand side to both gonads appearing as testicular-like structures, sometimes with a distinct tunica albuginea. The ovotestis or testis-like structure may have descended to an inguinal or scrotal location. Although interstitial cells of Leydig and seminiferous tubules were always abundant in testicular tissue, germ cells were never present. The lumen of the seminiferous tubules was packed with pale-staining, Sertoli-like cells. A bicornuate uterus was characteristic but suppression of the proximal portion of the Müllerian duct always adjoined an ovotestis; a corresponding development of the Wolffian duct featured as a convoluted epididymis. Inhibition of the Fallopian tube was attributed to a local influence of AMH from the Sertoli cells, as was the failure of small Graafian follicles within an ovotestis to respond to injected gonadotrophins. As to the aetiology of an ovotestis, defective colonisation of the genital ridges by primordial germ cells is considered, as is evidence for incorporation of adrenal cells into the embryonic gonad. Molecular probing has failed to reveal the classical sex-determining gene, Sry, and other Y-related DNA sequences such as Zfy and DYZI in almost all the intersex animals examined. Currently favoured as an explanation for ovotestis formation is a mutation in the inhibin gene within granulosa cells of Graafian follicles. Such a mutation would prompt secretion of the closely comparable glycoprotein molecule AMH in these genetic females, with a resultant progressive virilisation of gonadal tissue. The proposed mutation may be carried as an autosomal recessive gene by certain boars. Varying amounts of AMH secretion or differing timescales for the transition from inhibin to AMH could in part explain differing degrees of ovotestis formation. Despite this proposition, interactions between genes that prescribe functional testicular tissue, enhanced rates of gonadal development, and left-right asymmetries between the paired gonads now require systematic study.

Animals↗

Radiographic anatomy of the equine thorax as a basis for radiological interpretation.

This article describes the gross radiographic anatomy of the equine thorax observed on the lateral radiographic projection. The descriptions presented were derived from a retrospective study of a large number of thoracic radiographs of cases referred to the Massey University clinic in conjunction with research studies in bronchography, angiography and in vitro contrast techniques. The characteristics of the thoracic bony structures, the vasculature, and the airways are examined separately; followed by a discussion of the relative contribution of the various structures to the overall thoracic radiograph.

Journal Article↗

Shape model for the molecular interpretation of the flexoelectric effect.

A mean-field model for the flexoelectric polarization in nematics is presented, based on a continuous description of director deformations coupled to the molecular degrees of freedom via surface interactions. In such a framework, a consistent picture of the flexoelectric effect is obtained, including both dipolar and quadrupolar contributions, with a realistic account of the molecular characteristics of shape and charge distribution. The method is aimed at establishing a quantitative link between chemical structure and flexoelectric response. It provides numerical estimates of the effect and its temperature dependence and allows the recognition of the relevant molecular features for its emergence. Application to some representative systems, comprising mesogenic molecules and photoisomerizable dopants, is considered; it is shown that simple interpretative schemes can be misleading and a comparison with experimental data is reported.

Journal Article↗

Application and evaluation of the kappa statistic in the design and interpretation of chiropractic clinical research.

The Kappa statistic (K) is becoming more widely used in chiropractic clinical research. Although the calculation of K is straightforward, assumptions made regarding the acquisition and interpretation of data require serious consideration before conclusions regarding the final outcome can be made. Of particular interest is the application of K for the interpretation of validity and reliability. In this regard, I argue against the use of K as a summary statistic. I present here a description of K as a function of observer agreement (P(o)), without which K has little meaning, and show how a knowledge of this function should direct the design and, therefore, the interpretation of chiropractic clinical research. Only when all concerns regarding experimental design are either addressed directly or compensated for in the analysis can interpretations be made regarding validity or reliability. Lacking such attention, K becomes an indicator of experimental design rather than an indicator of validity or reliability.

Chiropractic↗

[Level of agreement in the interpretation of electrocardiograms].

OBJECTIVE: To evaluate diagnostic concordance in the interpretation of electrocardiograms (ECG) between general practitioners and a referral cardiologist. DESIGN: Crossover and descriptive. SETTING: Seven General Medicine consulting rooms at Burgo de Osma Health Centre. PATIENTS AND OTHER PARTICIPANTS: 318 ECGs included and distributed at random among the doctors, from May 1992 to April 1993 (11 months). 28 were excluded for analysis. MEASUREMENTS AND MAIN RESULTS: The proportion of agreement observed (Po) and the Kappa (K) index were obtained. Po was > 90% in all diagnostic categories, except normality (76.5%). Overall K was 0.52 (C.I. 95%: 0.50-0.54); K = 0.79 in disturbances in frequency; K = 0.52 in diagnosis of normality; K = 0.46 in disturbances of rhythm; K = 0.38 in ventricular conduction disorders; K = 0.36 in repolarisation disturbances; K = 0.32 for disorders of the auricular-ventricular union; K = 0.17 for unspecific disorders and K = 0.07 for auricular disturbances. CONCLUSIONS: Overall concordance is acceptable, as it is for normality and rhythm and frequency disturbances; for the remaining diagnostic categories it was light or ordinary. The Primary Care team (PCT) in comparison with the cardiologist underdiagnosed the frequency and a-v union disorders and overdiagnosed the unspecific disorders. The PCT must improve in their diagnoses of greater prevalence and low K value.

Arrhythmias, Cardiac↗

Integration of multiple ontologies in breast cancer pathology.

The diagnostic variability in pathology, widely reported in the literature, is partly due to the use of different classification systems by pathologists. The descriptions of morphological characteristics on the same image within different classification systems can be considered as different points of view of pathologists. Our aim is to represent the points of view of the experts in pathology during image interpretation and to propose a method ological and technical solution in order to implement interoperability between these points of view. According to the hybrid ontology approach, we developed a system in three stages consisting in 1) the representation of the various points of view in local ontologies 2) the realization of a shared vocabulary and the development of a mapping tool used to allow the matching of local ontologies and shared vocabulary 3) the development of a transcoding algorithm for the translation of a case description from one point of view to another. A first evaluation of the transcoding algorithm was conducted for 33 cases of breast pathology. Our results show that the pathologists generally produce descriptions of the cases which do not follow rigorously the interpretation rules corresponding to the point of view they assert to adopt. While most of the concepts of local ontologies can be transcoded from a local ontology to another one (varying from 62.5 % to 100% according to the local ontology), the transcoding of a description which is valid according to a certain point of view, often results in a description which is not rigorously in accordance with the new point of view. These results underline the differences of interpretation rules existing in the different points of view.

Algorithms↗

In vitro release behaviour of theophylline from PIB-induced ethylcellulose microcapsules interpreted by simple mathematical functions.

Theophylline microcapsules were prepared by phase separation using polyisobutylene as a coacervation-inducing agent. The release rate was dependent on the molecular weight of the polyisobutylene used. A simple mathematical function has been used for the quantitative description of the release process of the drug from PIB-induced microcapsules. It was found that 1/y = A(1/x) + B is the best for interpreting the release process of microcapsules, since the values of the constants A and B are proportional to the amount of the drug released.

Capsules↗

An assessment of the statistical procedures used in original papers published in the SAMJ during 1992.

OBJECTIVE: To assess the statistical procedures used in original papers published in the SAMJ. DESIGN: Descriptive study based on a random sample of 100 papers from the 153 papers with methodological content that were published in the SAMJ during 1992. RESULTS: This review showed that 34% (95% CI (25%; 43%)) of papers used no statistical procedure at all or used simple descriptive statistics only. In sampling methods, there was a predominance of the use of the period sampling method as opposed to probability sampling methods. Inappropriate statistical methods were used in 15% (6%; 24%) of papers, while in 16% (9%; 23%) statistical procedures and in 13% (6%; 20%) the sampling methods used could not be identified. Inaccurate graphical methods were used in 17% (6%; 28%) of papers. Confidence intervals and power calculations are used far too infrequently, in 33% (19%; 47%) and 11% (3%; 19%) of appropriate papers respectively. If the Journal's readers are at least familiar with simple descriptive statistics, contingency table analysis, simple epidemiological statistics, t-test procedure and confidence interval calculation and interpretation, they will have a complete understanding of the statistical content of 60% of original articles published in the Journal. CONCLUSION: Guidelines for the statistical treatment of reported data and the statistical review of articles before publication will assist substantially in improving the quality of statistical analysis. More intensive use of available biostatistical and epidemiological expertise at the study design and analysis stages is needed to shift the emphasis from descriptive research to analytical investigation.

Evaluation Studies as Topic↗

Hope and despair: the awakening of hope following acute spinal cord injury-an interpretative study.

The aim of this paper was to explore the patients' experiences of hope during the first months following acute spinal cord injury. This qualitative study has a descriptive and explorative design. Data were collected by personal interviews (N = 10) at a rehabilitation centre in Norway. A phenomenological-hermeneutic approach inspired by Ricoeur was used to extract the meaning content of the patients' experiences. The findings revealed one main interpretation; the awakening of hope, expressed by two themes: hope and despair, and uncertainty. Awakening hopes, even sometimes silent hopes, constituted a contextual background in the immediate aftermath of spinal cord injury.

Acute Disease↗

[The state of poisoning in Navarra].

We briefly comment on the state of clinical toxicology in Navarra and in the rest of Spain, with reference to the Toxicology Committee of Navarra and its aims. Epidemiological data from the Emergency Service of the Hospital of Navarra is presented, as well as where to find information on the subject; the epidemiological registration sheet designed by the SEMESTOX group is attached. A description is given of the characteristics of therapeutic drugs and drugs of abuse determination (type of sample, methodology and interpretation of results) carried out in the toxicological analytical unit of the Hospital of Navarra. Finally, reference is made to all of the antidotes available to the Pharmacy Service of the Hospital of Navarra, which is the reference center for the whole of the autonomous community of Navarra. A description is given for each medicine including its indications.

Humans↗