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At least 955 records · Page 53Linked to original sources

Application of an acoustic backscatter technique for characterizing the roughness of porous soil.

An acoustic backscatter technique proposed by Oelze et al. [J. Acoust. Soc. Am. 109, 1826-1832 (2001)] was used to characterize the roughness of porous soil surfaces. Roughness estimation errors are minimized when the effective flow resistivity of the porous soil is high, e.g., above 300,000 mks Rayls/m. Four soil plots were constructed by roughening soil with farming implements. Three plots were sealed using Saran powder dissolved in methyl ethyl ketone (MEK) and then covered to prevent further weathering. A fourth plot was left in the open and exposed to rainfall, which also acted to seal the surface and further change the roughness. In sealing the surface the effective flow resistivity of the surface was increased above 300,000 mks Rayls/m, which is typical for weathered agricultural surfaces. The roughness power spectra of the soil surfaces were measured by acoustic backscatter and alternatively by a laser profiler. Regression analysis was used to approximate each roughness power spectrum versus roughness wave number with a best-fit line. The best-fit line was used to calculate the rms height and the correlation length of the rough surface by integrating the approximate roughness power spectrum over a range of roughness wave number values. The range of roughness wave number values defines the roughness length scales used in the statistical calculations. High-roughness wave numbers correspond to smaller length scales of roughness and low-roughness wave numbers correspond to larger length scales of roughness. Over certain ranges of roughness wave number values the statistics from the acoustic backscatter and laser profiler measurements is in good agreement. However, as the low-cutoff roughness wave number is decreased and the high-cutoff roughness wave number is increased, agreement between the laser and acoustic techniques diminishes.

Journal Article↗

Iterative reconstruction algorithm for optoacoustic imaging.

Optoacoustic imaging is based on the generation of thermoelastic stress waves by heating an object in an optically heterogeneous medium with a short laser pulse. The stress waves contain information about the distribution of structures with preferential optical absorption. Detection of the waves with an array of broadband ultrasound detectors at the surface of the medium and applying a backprojection algorithm is used to create a map of absorbed energy inside the medium. With conventional reconstruction methods a large number of detector elements and filtering of the signals are necessary to reduce backprojection artifacts. As an alternative this study proposes an iterative procedure. The algorithm is designed to minimize the error between measured signals and signals calculated from the reconstructed image. In experiments using broadband optical ultrasound detectors and in simulations the algorithm was used to obtain three-dimensional images of multiple optoacoustic sources. With signals from a planar array of 3x3 detector elements a significant improvement was observed after about 10 iterations compared to the simple radial backprojection. Compared to conventional methods using filtered backprojection, the iterative method is computationally more intensive but requires less time and instrumentation for signal acquisition.

Journal Article↗

Errors in ultrasonic scatterer size estimates due to phase and amplitude aberration.

Current ultrasonic scatterer size estimation methods assume that acoustic propagation is free of distortion due to large-scale variations in medium attenuation and sound speed. However, it has been demonstrated that under certain conditions in medical applications, medium inhomogeneities can cause significant field aberrations that lead to B-mode image artifacts. These same aberrations may be responsible for errors in size estimates and parametric images of scatterer size. This work derives theoretical expressions for the error in backscatter coefficient and size estimates as a function of statistical parameters that quantify phase and amplitude aberration, assuming a Gaussian spatial autocorrelation function. Results exhibit agreement with simulations for the limited region of parameter space considered. For large values of aberration decorrelation lengths relative to aberration standard deviations, phase aberration errors appear to be minimal, while amplitude aberration errors remain significant. Implications of the results for accurate backscatter and size estimation are discussed. In particular, backscatter filters are suggested as a method for error correction. Limitations of the theory are also addressed. The approach, approximations, and assumptions used in the derivation are most appropriate when the aberrating structures are relatively large, and the region containing the inhomogeneities is offset from the insonifying transducer.

Acoustics↗

Noise suppression using the coherent onion peeler.

An innovative noise suppression algorithm, called the coherent onion peeler (COP) (patent detained) is derived by minimizing the error in the coherent subtraction of the data from a single plane wave model. The COP solution "collapses" for all beamforming algorithms to the same solution at the complex hydrophone FFT level. Thus, any beamformer can be applied to the residual FFTs after the COP has been applied. The COP is applied to the strongest interferer first and the residual FFTs represent the acoustic field with this interferer coherently "peeled back" like the outer skin of an onion. This procedure can be repeated any number of times to coherently suppress the noise from all interferers present. A new nonadaptive beamformer is developed that "blends" together the best beam pattern properties of conventional beamforming (CBF) near array design frequency and the generalized fourier integral method (GFIM) at very low frequencies (VLF). In between these frequency extremes, the GFIM-CBF Blend (patent pending) (G-C Blend) is a frequency-dependent weighted average of both individual beamformers. COP and G-C Blend are applied to the broadband noise emitted by the tow ship, which severely degrades the performance of the towed array; COP reduced this broadband noise by over 19 dB in a single pass.

Fourier Analysis↗

A pitch-synchronous analysis of hoarseness in running speech.

A method of pitch-synchronous acoustic analysis of hoarseness requiring a voice sample of only four fundamental periods is presented. This method calculates a noise-to-signal (N/S) ratio, which indicates the depth of valleys between harmonic peaks in the power spectrum. The spectrum is calculated pitch synchronously from a Fourier transform of the signal, windowed through a continuously variable Hanning window spanning exactly four fundamental periods. A two-stage procedure is used to determine the exact duration of the four fundamental periods. An initial estimate is obtained using autocorrelation in the time domain. A more precise estimate is obtained in the frequency domain by minimizing the errors between the preliminary calculated power spectrum and the predicted spectrum spread of a windowed harmonic signal. Analysis of synthesized voices showed that the N/S ratio is sensitive to additive noise, jitter, and shimmer, and is insensitive to slow (8 Hz) modulation in fundamental frequency and amplitude. An analysis of pre- and postoperative voices of six patients with benign laryngeal disease showed that the N/S ratio for vowel /u/ in running speech consistently improved after surgery for all subjects, in agreement with their successful therapeutic results.

Hoarseness↗

Human papillomavirus type 16 sequence variants: identification by E6 and L1 lineage-specific hybridization.

A catalog of human papillomavirus (HPV) type 16 (HPV-16) E6 and L1 signature nucleotides was used to develop PCR-based oligonucleotide probe systems capable of distinguishing HPV-16 class and subclass variants. Twenty-three E6-specific oligonucleotide probes targeting 13 variant nucleotide positions and 12 L1-specific oligonucleotide probes targeting 6 variant nucleotide positions were used to characterize HPV-16-containing cervicovaginal lavage specimens. Nucleotide positions that could be distinguished included E6 nucleotides 109, 131, 132, 143, 145, 178, 183, 286, 289, 335, 350, 403, and 532 and L1 nucleotides 6695, 6721, 6803, 6854, 6862, and 6994. Combined hybridization patterns were assigned on the basis of the predicted HPV-16 class, subclass, or minor class variants described previously (T. Yamada, C. M. Wheeler, A. L. Halpern, A.-C. M. Stewart, A. Hildesheim, and S.A. Jenison, J. Virol. 69:7743-7753, 1995). The major HPV-16 variant lineages detected included European prototype-like (E-P), Asian (As), Asian-American (AA), and African (Af1 and Af2) lineages. In addition, E-G131, an E-class variant, and AA-G183, an AA-class variant, were also identified. For each clinical specimen, DNA hybridization results were compared to nucleotide sequence determinations. Targeted L1 and E6 marker nucleotides covaried within all HPV-16 variant isolates examined. These hybridization-based methods result in minimal misclassification error, are amenable to targeting additional lineage-specific nucleotide positions, and should facilitate the large-scale, low-cost analysis of HPV-16 variants in epidemiologic investigations. Specifically, these methods will facilitate epidemiologic studies of HPV-16 transmission and natural history, as well as studies of associations between HPV variants, host immune responses, and cervical neoplasia.

DNA, Viral↗

Acute acquired comitant esotropia.

Acute acquired comitant esotropia has been used to describe a dramatic onset of a relatively large angle of esotropia with diplopia and minimal refractive error. We describe six children aged 5 to 11 years who developed an acute non-accommodative esotropia with diplopia. Neurological examination, including CT scan, in each of these children gave negative results. We suggest that this is an unusual presentation of esotropia of undetermined aetiology. The diagnosis, clinical characteristics, and management are discussed.

Acute Disease↗

A method to study cell proliferation kinetics in human gastric mucosa.

The purpose of this investigation was to study cell proliferation kinetics in human gastric mucosa. Biopsies were taken from the antral and fundic part of the stomach through a fibre-gastroscope and incubated in culture medium containing a DNA-precursor (3-H-thymidine). Autoradiographs were prepared by the dipping technique. The number of labelled cells and the total number of cells in all cross sections of foveolae containing one or more labelled cells were counted. The labelling index (LI), which is defined as the percentage of labelled cells in the progenitor cell region, was estimated. When only cross sections with labelled cells are taken into consideration, the labelling index will be a little overestimated. In order to reduce this error a formula for correction was worked out. Thirty-six patients with different gastric diseases were studied. The observer error was minimal, and the results were highly reproducible. It was not possible to demonstrate any correlation between the labelling indices in antral and fundic mucosa. A significantly increased epithelial proliferation was found in fundic mucosa from patients with gastric cancer and atrophic gastritis.

Adult↗

Direct measurement of the influx of sodium in frog skeletal muscle.

When a frog's sartorius is immersed in sodium-free lithium-substituted solution at 0 degree C, the tissue sodium content declines in two distinct phases. The rate of the slow phase has a temperature dependence expected for a process dependent on metabolism (Q10, ca. 3), and sodium content (51.5 mmol/kg dry weight) equal to that measured by others using electron microprobe microanalysis. The rate of the rapid phase has a temperature dependence (Q10, 0.3-1) expected for a passive process, and a sodium content equal to that in the sorbitol space. It was concluded that incubation of a muscle at 0 degree C for 45 min in sodium-free solution will wash out almost all of the sodium in the extracellular space but will leave almost all the sodium in the intracellular space. The unidirectional sodium influx was measured by incubating a muscle in 22Na-containing Ringer's solution for a timed interval at 23 degrees C, then in sodium-free lithium-substituted solution at 0 degree C for 45 min, before analysis for ion content and radioactivity. The ratio of the specific activity of sodium in the muscle to that in the radioactive bathing solution was calculated, and the time course of its rise was used to calculate an influx rate coefficient. The use of the specific activity minimizes the error due to the loss of intracellular sodium and radiosodium which occurs during the wash in cold solution. It was found that the rate of the radiosodium uptake varied as the uptake proceeded, in a manner similar to that previously shown for the rate of the radiosodium efflux and attributed to the existence of a diversity of cell size in this muscle.

Animals↗

A mixed integer linear programming (MILP) framework for inferring time delay in gene regulatory networks.

In this paper, an optimization based modeling and solution framework for inferring gene regulatory networks while accounting for time delay is described. The proposed framework uses the basic linear model of gene regulation. Boolean variables are used to capture the existence of discrete time delays between the various regulatory relationships. Subsequently, the time delay that best fits the expression profiles is inferred by minimizing the error between the predicted and experimental expression values. Computational experiments are conducted for both in numero and real expression data sets. The former reveal that if time delay is neglected in a system a priori known to be characterized with time delay then a significantly larger number of parameters are needed to describe the system dynamics. The real microarray data example reveals a considerable number of time delayed interactions suggesting that time delay is ubiquitous in gene regulation. Incorporation of time delay leads to inferred networks that are sparser. Analysis of the amount of variance in the data explained by the model and comparison with randomized data reveals that accounting for time delay explains more variance in real rather than randomized data.

Computational Biology↗

Artificial neural networks for blur identification and restoration of nonlinearly degraded images.

In this paper, an image restoration algorithm is proposed to identify noncausal blur function. Image degradation processes include both linear and nonlinear phenomena. A neural network model combining an adaptive auto-associative network with a random Gaussian process is proposed to restore the blurred image and blur function simultaneously. The noisy and blurred images are modeled as continuous associative networks, whereas auto-associative part determines the image model coefficients and the hetero-associative part determines the blur function of the system. The self-organization like structure provides the potential solution of the blind image restoration problem. The estimation and restoration are implemented by using an iterative gradient based algorithm to minimize the error function.

Algorithms↗

Analytical interpretation of feed-forward nets outputs after training.

The minimization quadratic error criterion which gives rise to the back-propagation algorithm is studied using functional analysis techniques. With them, we recover easily the well-known statistical result which states that the searched global minimum is a function which assigns, to each input pattern, the expected value of its corresponding output patterns. Its application to classification tasks shows that only certain output class representations can be used to obtain the optimal Bayesian decision rule. Finally, our method permits the study of other error criterions, finding out, for instance, that absolute value errors lead to medians instead of mean values.

Algorithms↗

A reliable method for locating electropermeable points on the skin surface.

A method employing solvent-activated tape electrode was adapted for locating electropermeable points, minimizing possible errors due to human and external factors. Measurements along two meridians on the forearm showed that these points were somewhat scattered about the conventional acupuncture loci and their observable occurrence was probably the result of localized thermal damage of the epidermis.

Acupuncture Therapy↗

Mean airway pressure and alveolar pressure during high-frequency ventilation.

Studies and applications of high-frequency ventilation (HFV) are often performed under conditions of controlled mean airway pressure (Paw). In the present study we tested the assumption that controlling Paw adequately controls lung volume during HFV by investigating the relationship between a reliably measured Paw and the mean alveolar pressure (Palv) of the lungs during HFV of healthy dogs. We minimized the errors of Paw measurement due to the Bernoulli effect and various technical factors by appropriate choice of transducers, amplifiers, and measurement site. Palv was estimated by clamping the ventilator tube during oscillation and measuring the equilibration pressure of the lung and airways. Paw and Palv were determined as functions of frequency (8-25 Hz), tidal volume (60-90 ml), Paw (-5 to 12 cmH2O), and position of the animal (supine vs. lateral). We found that Paw could significantly underestimate Palv and that the degree of underestimation increased at higher frequencies, larger tidal volumes, and lower Paw. Shifting the animal from the supine to the lateral position greatly accentuated this effect. The elevation of Palv above Paw was seen to be a function of mean flow and largely independent of the frequency-tidal volume combination which produced the flow. A possible explanation of this pressure difference is that it results from differences in inspiratory and expiratory airway impedances, which in turn depend on airway geometry, compliance, lung volume, and expiratory flow limitation.

Airway Resistance↗

Acute hemorrhage in dogs: construction and validation of models to quantify blood loss.

We examined the ability of commonly used clinical parameters to quantify acute hemorrhage in dogs. Eight animals were bled 40 ml/kg body wt over 100 min. Ten hemodynamic and 20 blood laboratory parameters were obtained every 10 min to construct, with use of linear regression analysis, models that quantify blood loss. During model construction, the best indicator of quantity of hemorrhage was arterial base deficit [ABD; coefficient of variation (CV) 35%]. This model was more accurate (P < 0.05) than 27 others (CV range 43 to 63%) and similar to systolic (CV 40%) and mean (CV 40%) arterial pressures. In validation studies in 10 additional animals, our best models based on ABD and systolic and mean arterial pressures each unexpectedly showed a significant (P < 0.05) decrease in accuracy (CV 86, 57, and 60%, respectively) attributable to large baseline (before hemorrhage) variability among animals. To eliminate this variability, models based on changes from baseline measurements were investigated. The best predictor of change in blood volume was change in ABD (CV 27%). This model was significantly (P < 0.05) more accurate than any of 27 others (CV range 36 to 65%) and similar to change in venous base deficit and venous pH (each CV 31%). When validated, acid-base models such as ABD, venous pH, and arterial bicarbonate were the best predictors of volume change (CV range 28 to 40%). With the use of multivariate analysis, pairwise combinations of single parameter models (n = 465) improved prediction errors only minimally. In summary, most commonly used hemodynamic and blood indexes could not be validated as accurate measurements in quantifying hemorrhage. In contrast, changes in acid-base parameters were validated as moderately accurate predictors of blood volume changes and therefore may have utility in the assessment of patients with ongoing hemorrhage.

Acid-Base Equilibrium↗

Phase-plane analysis of gaze stabilization to high acceleration head thrusts: a continuum across normal subjects and patients with loss of vestibular function.

We investigated the vestibulo-ocular reflex (VOR) during high-acceleration, yaw-axis, head rotations in 12 normals and 15 patients with vestibular loss [7 unilateral vestibular deficient (UVD) and 8 bilateral vestibular deficient (BVD)]. We analyzed gaze stabilization within a 200-ms window after head rotation began, using phase planes, which allowed simultaneous analysis of gaze velocity and gaze position. These "gaze planes" revealed critical dynamic information not easily gleaned from traditional gain measurements. We found linear relationships between peak gaze-velocity and peak gaze-position error when normalized to peak head speed and position, respectively. Values fell on a continuum, increasing from normals, to normals tested with very high acceleration (VHA = 10,000-20,000 degrees/s2), to UVD patients during rotations toward the intact side, to UVD patients during rotations toward the lesioned side, to BVD patients. We classified compensatory gaze corrections as gaze-position corrections (GPCs) or gaze-velocity error corrections (GVCs). We defined patients as better-compensated when the value of their end gaze position was low relative to peak gaze position. In the gaze plane this criterion corresponded to relatively stereotyped patterns over many rotations, and appearance of high velocity (100-400 degrees/s) GPCs in the gaze plane ending quadrant (150-200 ms after head movement onset). In less-compensated patients, and normals at VHA, more GVCs were generated, and GPCs were generated only after gaze-velocity error was minimized. These findings suggest that challenges to compensatory vestibular function can be from vestibular deficiency or novel stimuli not previously experienced. Similar patterns of challenge and compensation were observed in both patients with vestibular loss and normal subjects.

Acceleration↗

The complexity of linkage analysis with neural networks.

As the focus of genome-wide scans for disease loci have shifted from simple Mendelian traits to genetically complex traits, researchers have begun to consider new alternative ways to detect linkage that will consider more than the marginal effects of a single disease locus at a time. One interesting new method is to train a neural network on a genome-wide data set in order to search for the best non-linear relationship between identity-by-descent sharing among affected siblings at markers and their disease status. We investigate here the repeatability of the neural network results from run to run, and show that the results obtained by multiple runs of the neural network method may differ quite a bit. This is most likely due to the fact that training a neural network involves minimizing an error function with a multitude of local minima.

Diabetes Mellitus, Type 1↗