SEARCH · PubMed Health

Results for “Spectroscopy, Fourier Transform Infrared”

Explore indexed PubMed citations for clinical trials, systematic reviews and public health research. Read source abstracts and follow each citation to its original PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 955 records · Page 53Linked to original sources

PubMed1999

Structural changes of rabbit myosin subfragment 1 altered by malonaldehyde, a byproduct of lipid oxidation.

Rabbit myosin subfragment 1 was allowed to react with malonaldehyde, a byproduct of lipid oxidation in a model system containing the subfragment 1 and malonaldehyde. The modified subfragment 1 was compared to the control, with use of sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), circular dichorism (CD), Fourier transform infrared spectroscopy (FT-IR), and free amino group measurements. Both the modified and control samples were cleaved with cyanogen bromide (BrCN) treatment, and the BrCN fragments were analyzed by SDS-PAGE with tricine gel. Results from SDS-PAGE suggest that malonaldehyde causes cross-linking or polymerization of the protein during incubation. Malonaldehyde also reduced alpha-helix content (CD), increased random structure (FT-IR), and eliminated some beta-strand structure (FT-IR) in subfragment 1.

Animals↗

PubMed2004

Formation and characterization of glutamate dehydrogenase monolayers on silicon supports.

In this paper we have tested two different procedures (the "three-step" and the "four-step" procedures) for the covalent immobilization of glutamate dehydrogenase (GDH) onto silicon supports. Atomic force microscopy (AFM), Fourier-transform infrared spectroscopy (FT-IR), fluorescence spectroscopy and an enzymatic assay were used to probe the structure and activity of the immobilized enzyme. Our results demonstrate that coupling through the "three-step" procedure does not significantly affect either the fold pattern or the activity of the enzyme, suggesting that this method could be ideally suited to the development of high quality monolayers for use in enzyme-based planar biosensors.

Biosensing Techniques↗

PubMed2004

Conformation of the Z19 prolamin by FTIR, NMR, and SAXS.

The alpha zein, the maize storage prolamin, is a mixture of several homologous polypeptides that shows two bands in SDS-PAGE, called Z19 and Z22. The conformation studies carried out by several authors in this mixture are conflicting. To elucidate these inconsistencies, we analyzed the conformation of the Z19 fraction, extracted from BR451 maize variety by Fourier transform infrared spectroscopy, nuclear magnetic resonance, and small-angle X-ray scattering. The infrared results show that Z19 has 46% of alpha helix and 22% of beta sheet. The fast N-H to N-D exchange measured by (1)H NMR spectroscopy showed that Z19 is not a compact structure. The scattering measurements indicated an extended structure with 12 by 130 A. With these data, we have modeled the Z19 structure as a hairpin, composed of helical, sheet, turns, and secondary structures, folded back on itself.

Magnetic Resonance Spectroscopy↗

PubMed2006

pH dependence of copper geometry, reduction potential, and nitrite affinity in nitrite reductase.

Many properties of copper-containing nitrite reductase are pH-dependent, such as gene expression, enzyme activity, and substrate affinity. Here we use x-ray diffraction to investigate the structural basis for the pH dependence of activity and nitrite affinity by examining the type 2 copper site and its immediate surroundings in nitrite reductase from Rhodobacter sphaeroides 2.4.3. At active pH the geometry of the substrate-free oxidized type 2 copper site shows a near perfect tetrahedral geometry as defined by the positions of its ligands. At higher pH values the most favorable copper site geometry is altered toward a more distorted tetrahedral geometry whereby the solvent ligand adopts a position opposite to that of the His-131 ligand. This pH-dependent variation in type 2 copper site geometry is discussed in light of recent computational results. When co-crystallized with substrate, nitrite is seen to bind in a bidentate fashion with its two oxygen atoms ligating the type 2 copper, overlapping with the positions occupied by the solvent ligand in the high and low pH structures. Fourier transformation infrared spectroscopy is used to assign the pH dependence of the binding of nitrite to the active site, and EPR spectroscopy is used to characterize the pH dependence of the reduction potential of the type 2 copper site. Taken together, these spectroscopic and structural observations help to explain the pH dependence of nitrite reductase, highlighting the subtle relationship between copper site geometry, nitrite affinity, and enzyme activity.

Binding Sites↗

PubMed2005

Biomimetic mineralization of partially bioresorbable glass fiber reinforced composite.

The aim of this study was to investigate the biomimetic mineralization on the surface of a glass fiber reinforced composite with partially resorbable biopolymer matrix. The E-glass fibers were preimpregnated with a novel biopolymer of poly(hydroxyproline) amide, and further impregnated in the monomer system of bis-phenyl glycidyl dimethacrylate (Bis-GMA)--triethylene glycol dimethacrylate (TEGDMA), which formed interpenetrating polymer networks (IPN) with the preimpregnation polymer. After light-initiated polymerization of the monomer system, the rhombic test specimens (n = 6) were immersed in the simulated body fluid (SBF) with the bioactive glass for 24 h, and then the apatite nuclei were allowed to grow for 1, 3, 5 and 7 days in the SBF. The control test specimens (n = 3) were immersed in SBF without the bioactive glass. According to the scanning electron microscope (SEM), a mineral layer was formed on the surface of all the specimens, which were immersed with bioactive glass. The layer was thickened by the prolonged immersion time to a uniform layer. The Ca/P atomic ratio of the mineral varied between 1.30 and 1.54 as analyzed by the energy dispersive X-ray analysis (EDXA). The Fourier transform infrared spectroscopy (FT-IR) spectra gave signals for the mineral, which are characteristic of both bone-like apatite and orthocalciumphosphate. In conclusion, the mineral layer was formed on the surfaces of the specimens by biomimetic mineralization, the mineral being a mixture of bone-like apatite, orthocalciumphosphate and other calcium phosphates.

Apatites↗

PubMed2002

Alpha-helix structure in Alzheimer's disease aggregates of tau-protein.

The discovery of beta-sheet structure in Alzheimer's amyloid fibrils, and then in many other disease-related protein fibrils, has led to the widely believed view that beta-sheet formation is the general mechanism of aberrant protein aggregation leading to disease. This notion is further reinforced by recent findings, which indicate that normal proteins can be induced to form beta-sheet fibrils in vitro. Alzheimer's disease, a paradigm proteopathy, is accompanied by the formation of two distinct aggregates, amyloid fibrils and paired helical filaments (PHFs). Electron microscope images of PHFs show pairs of twisted ribbons with 80 nm periodicity. However, there is little information of the molecular structure of PHFs, as previous studies have failed to identify signs of regular structure. Using far-UV circular dichroism and Fourier-transformed infrared spectroscopy, we find that PHFs are comprised of alpha-helices. This is remarkable as tau-protein, PHF's primary constituent, has a high abundance of helix-breaking amino acids and is unstructured in solution. We also find that PHFs are very stable, as judged by their high melting temperature and resistance to protease digestion. PHFs are the first example of pathological aggregation associated to the formation of alpha-helix.

Alzheimer Disease↗

PubMed2006

Low amounts of sucrose are sufficient to depress the phase transition temperature of dry phosphatidylcholine, but not for lyoprotection of liposomes.

Disaccharides such as sucrose and trehalose play an important role in stabilizing cellular structures during dehydration. In fact, most organisms that are able to survive desiccation accumulate high concentrations of sugars in their cells. The mechanisms involved in the stabilization of cellular membranes in the dry state have been investigated using model membranes, such as phosphatidylcholine liposomes. It has been proposed that the lyoprotection of liposomes depends on the depression of the gel to liquid-crystalline phase transition temperature (T(m)) of the dry membranes below ambient and on the prevention of membrane fusion by sugar glass formation, because both lead to leakage of soluble content from the liposomes. Since fusion is prevented at lower sugar/lipid mass ratios than leakage, it has been assumed that more sugar is needed to depress T(m) than to prevent fusion. Here, we show that this is not the case. In air-dried egg phosphatidylcholine liposomes, T(m) is depressed by >60 degrees C at sucrose/lipid mass ratios 10-fold lower than those needed to depress fusion to below 20%. In fact, T(m) is significantly reduced at mass ratios where no bulk sugar glass phase is detectable by Fourier transform infrared spectroscopy or differential scanning calorimetry. A detailed analysis of the interactions of sucrose with the P=O, C=O, and choline groups of the lipid and a comparison to published data on water binding to phospholipids suggests that T(m) is reduced by sucrose through a "water replacement" mechanism. However, the sucrose/lipid mass ratios necessary to prevent leakage exceed those necessary to prevent both phase transitions and membrane fusion. We hypothesize that kinetic phenomena during dehydration and rehydration may be responsible for this discrepancy.

Calorimetry, Differential Scanning↗

PubMed2003

Apatite formation on dental ceramics modified by a bioactive glass.

Restorative dental materials are considered biocompatible without exhibiting any bioactive behaviour. The aim of this study was the investigation of surface structure changes on conventional dental ceramics used in metal-ceramic restorations modified by a bioactive glass, after immersion in SBF for various time periods. Bioactive glass powder was mixed with porcelain powder with three different weight ratios: 1:1, 1:2, and 2:1. The two powders were mixed with porcelain modelling liquid and the mixture was transferred and spread on the surface of pre-fabricated ceramic disks. Coated ceramic specimens after being exposed to a specific thermal cycle as it is recommended for dental ceramics were soaked in Simulated Body Fluid (SBF) at 37 degrees C for various periods of time. After soaking, specimens were studied using Fourier Transform Infrared Spectroscopy (FTIR), Scanning Electron Microscopy (SEM) and Energy Dispersive Spectroscopy (EDS). Results revealed the development of a non-stoichiometric, biological apatite layer on their surface after exposure in SBF for several time periods. The onset of apatite-layer formation is directly dependent on the amount of bioglass in the coating and its thickness reduces within the specimens of the same bioactive glass-porcelain proportion with time, reaching an average thickness of 15 microm at the longest immersion time, for all the specimens.

Apatites↗

PubMed2004

Combination of ion beam stabilisation, plasma etching and plasma deposition for the development of tissue engineering micropatterned supports.

The performance of biomedical assays at both molecular and cellular level depends greatly on the ability to design new polymer surfaces. Patterns can be created by using materials with contrasted surface properties. In this work we describe in detail the preparation of micropatterned surfaces to be used as tissue engineering supports. Poly(ethylene glycol) (PEG) was used as the 'anti-fouling' polymer in opposition to functional regions covered by acrylic acid (AAc). Since spin-casted PEG films are unstable, ion beam stabilization (IBS) treatment was applied in order to render it insoluble. On the other hand, AAc films were deposited by low-power plasma chemical vapour deposition. Chemical properties of both polymers were monitored by Fourier transform infrared spectroscopy and X-ray photoelectron spectroscopy while topographic features were followed by atomic force microscopy. Finally, a micropattern was produced by using a mask, which isolated the IBS-PEG from the AAc-deposited regions. Endothelial cells cultured on the surface were observed to follow the micropatterns. In fact, for a certain surface density it was observed that the cells present tensile or compressive stresses when forced to remain in the anti-fouling or the functionalised regions, respectively.

Acrylates↗

PubMedDate not supplied

Surface analysis of clinically used expanded PTFE endoscopic tubing treated by the STERIS PROCESS.

The repeated use of semicritical and critical medical instruments in clinical procedures carries an inherent risk of subsequent patient infection, necessitating "high-level" disinfection or sterilization. However, residual bio-organic contamination may hinder the ability of such processes to efficiently destroy infectious microbes. In this study, the inner surfaces of three clinically used expanded polytetrafluoroethylene endoscope tubes treated with glutaraldehyde disinfectant solutions were analyzed to quantify the efficacy of a buffered peracetic acid sterilization procedure, the STERIS PROCESS, in removing this contamination. Samples of the flexible distal biopsy channel of colonoscope tubes were examined before and after a variable number of STERIS processing cycles by three complementary surface characterization techniques: Fourier transform infrared spectroscopy (FTIR), electron spectroscopy for chemical analysis (ESCA), and atomic force microscopy (AFM). Glutaraldehyde fixed protein deposits identified on the tubing surface decreased with increased STERIS cycles. After 20 STERIS cycles, FTIR data indicated that approximately 30% of the contamination was removed, whereas ESCA indicated that 50% of the contamination was removed. AFM images showed considerable variation between control and processed samples, including evidence for cracks in the residual contamination layer. Clinical glutaraldehyde treatment and subsequent device drying are suggested to be two majors factors that limit effective cleaning of endoscopic tubing.

Biocompatible Materials↗

PubMed1993

The backbone structure of the major cold-shock protein CS7.4 of Escherichia coli in solution includes extensive beta-sheet structure.

CS7.4 is the major cold-shock protein specifically expressed to a level as high as 13% of the total cellular protein within the first hour when Escherichia coli cell culture is shifted from 37 to 15 degrees C [Goldstein et al. (1990) Proc. Natl. Acad. Sci. USA 87, 283-287]. It consists of 70 amino acid residues with a very high content of aromatic residues. CS7.4 was overproduced and purified to homogeneity. Its secondary structure was analyzed by examining circular dichroism at both the far and near-UV regions; the results suggest that the protein is largely beta-sheet in conformation. The predominance of beta-sheet structure in the protein was confirmed by using Fourier-transform infrared spectroscopy. A folded compact conformation was also verified by fluorescence emission spectroscopy. We evaluated Tm, delta H, and delta S from the thermal denaturation profile of the protein. Unusual spectral features observed in the far-UV region are attributed to the high content of aromatic residues. The protein is relatively small and contains no disulfide bonds. However, it is surprisingly stable to heat denaturation.

Bacterial Proteins↗

PubMed2006

Intraperitoneal stability of alginate-polyornithine microcapsules in rats: an FTIR and SEM analysis.

Alginate-polycation microcapsule systems have been used over decades as delivery vehicles for cell and protein therapy. These systems have been unpredictable across a range of indications with questions resulting around the inherent stability of the alginate polysaccharide and failure mode of the delivery system. The current study focuses on such a system using 5 different alginates, 2 of which are commercially purified, which are crosslinked by polyornithine. Capsules formed by frequency-generated droplet formation were studied in the peritoneal cavity of Long-Evans rats over the course of 3 months by morphometry, Fourier-transform infrared spectroscopy (FTIR), and scanning electron microscopy of the surface. Individual capsule components were also investigated on FTIR and a relative stability index was generated by titration for comparison to explanted samples over time. Using these techniques, a distinct degradation pattern was noted and is compared between the 5 alginate sources.

Alginates↗

PubMed2004

Formation and characterization of inclusion complexes of poly(butylene succinate) with alpha- and gamma-cyclodextrins.

The inclusion complexes (ICs) of alpha- and gamma-cyclodextrins (CDs) with high-molecular-weight poly(butylene succinate) (PBS) were prepared and characterized by differential scanning calorimetry, Fourier-transform infrared spectroscopy (FT-IR), wide-angle X-ray diffraction, solid-state 13C nuclear magnetic resonance (NMR) spectroscopy, and solution 1H NMR spectroscopy. The resultant ICs were found to have channel structures. FT-IR data suggested that the ICs were stabilized by hydrogen bonds between the host CD molecules and the guest PBS chains. Through the formation of ICs, the PBS chain possibly adopts the kink conformation in the included state, as indicated by NMR analysis.

Butylene Glycols↗

PubMed2004

Novel polymer-synthesized ceramic composite-based system for bone repair: an in vitro evaluation.

The emergence of synthetic bone repair scaffolds has been necessitated by the limitations of both autografts and allografts. Several candidate materials are available including degradable polymers and ceramics. However, these materials possess their own limitations that at least in part may be overcome by combining the two materials into a composite. Toward that end, a novel approach to forming a polymer/ceramic composite has been developed that combines degradable poly(lactide-co-glycolide) microspheres and a poorly crystalline calcium phosphate that is synthesized within the microspheres, which are then fused together to form a porous three-dimensional scaffold for bone repair. The design, fabrication, and characterization of the composite microspheres, the calcium phosphate formed within these microspheres, and the formation of scaffolds were studied. The calcium phosphate formed was analyzed by x-ray diffraction, Fourier transform infrared spectroscopy, and energy dispersive spectroscopy, and was shown to be similar to native bone in both composition and crystallinity by controlling certain processing parameters such as mixing time, solution pH, and mixing temperature. Scaffolds with porous interconnected structures and mechanical properties in the range of trabecular bone were fabricated via precise control of polymer/ceramic ratios within the microspheres and scaffold heating times. This composite scaffold represents a new and important vehicle for bone-tissue engineering.

Bone Substitutes↗

PubMed2005

Direct micro-patterning of biodegradable polymers using ultraviolet and femtosecond lasers.

Thin films of biodegradable polymeric materials, poly(epsilon-caprolactone) (PCL) and poly(glycolic acid) (PGA) were micro-patterned using a Ti-sapphire femtosecond pulsed laser and ArF excimer UV laser in ambient conditions. The laser-patterned polymers were characterized using a scanning electron microscope (SEM), Fourier transform infrared spectroscopy in attenuated total reflectance mode (FTIR-ATR) and X-ray photoelectron spectroscopy (XPS). In-vitro degradation tests were performed and the laser-patterned samples showed to be within one standard deviation of the control samples. Our results demonstrate that both lasers are excellent tools for micro-patterning biodegradable polymers since the bulk properties of the material can remain intact and because the direct-write method is rapid, flexible, and a chemical-free process.

Aluminum Oxide↗

PubMed2006

Purification and structural characterization of human ERp29.

ERp29 is a major resident of the endoplasmic reticulum (ER) and is postulated to play an important molecular chaperone role in most animal cells. Human ERp29 was isolated to homogeneity in high yield by using a bacterial expression system. Its secondary structure was studied by circular dichroism (CD), Fourier transformed infrared spectroscopy (FTIR) and Raman spectroscopy and it was found that human ERp29 comprises significant alpha-helical structure. The details of its temperature-induced conformational changes was studied by CD and FTIR for the first time, revealing that the protein is stable below 50 degrees C and has two distinct structural transitions between 50 degrees C and 70 degrees C. This may shed light on ERp29's inability to protect substrate proteins against thermal aggregation.

Amino Acid Sequence↗

PubMed2004

Characterization of collagen/chitosan films for skin regenerating scaffold.

Various proportions of chitosan/collagen films (70/30% to 95/05%) w/w were prepared and evaluated for its suitability as skin regenerating scaffold. Interactions between chitosan and collagen were studied using Fourier Transform Infrared spectroscopy (FTIR) and Differential Scanning Colorimetry (DSC). Scanning Electron Microscope (SEM) was used to investigate the morphology of the blend. Mechanical properties were evaluated using a Universal Testing Machine (UTM). The chitosan/collagen films were found to swell proportionally with time until it reaches equilibrium. FTIR spectroscopy indicated no chemical interaction between the components of the blends. DSC data indicated only one peak proving that these two materials are compatible at all proportions investigated. SEM micrographs also indicated good homogeneity between these two materials.

Biocompatible Materials↗

PubMed2005

Characterization of enamel with variable caries risk.

Small angle X-ray scattering (SAXS), X-ray diffraction (XRD), and Fourier transform infrared spectroscopy (FTIR) have been used to look at enamel from nine premolars, three each from individuals in low, medium and high risk caries groups. Only SAXS was able to detect consistent differences between any of the groups. In enamel from the high caries risk group, the micropores between the hydroxyapatite crystals were laminar. In enamel from the low caries risk group, the micropores were cylindrical. Other parameters varied between teeth but were not correlated with caries risk.

Adolescent↗