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Microbial impacts to the near-field environment geochemistry: a model for estimating microbial communities in repository drifts at Yucca Mountain.

Geochemical and microbiological modeling was performed to evaluate the potential quantities and impact of microorganisms on the geochemistry of the area adjacent to and within nuclear waste packages in the proposed repository drifts at Yucca Mountain, Nevada. The microbial growth results from the introduction of water, ground support, and waste package materials into the deep unsaturated rock. The simulations, which spanned 1 million years, were accomplished using a newly developed computer code, Microbial Impacts to the Near-Field Environment Geochemistry (MING). MING uses environmental thresholds for limiting microbial growth to temperatures below 120 degrees C and above relative humidities of 90% in repository drifts. Once these thresholds are met, MING expands upon a mass balance and thermodynamic approach proposed by McKinley et al. [FEMS Microbiol. Rev. 20 (1997) 545] by using kinetic rates to supply constituents from design materials and constituent fluxes including solubilized rock components into the drift to perform two separate mass balance calculations as a function of time. The first (nutrient limit) assesses the available nutrients (C, N, P and S) and calculates how many microorganisms can be produced based on a microorganism stoichiometry of C(160)(H(280)O(80))N(30)P(2)S. The second (energy limit) calculates the energy available from optimally combined redox couples for the temperature and pH at that time. This optimization maximizes those reactions that produce >15 kJ/mol (limit on useable energy) using an iterative linear optimization technique. The final available energy value is converted to microbial mass at a rate of 1 kg of biomass (dry weight) for every 64 MJ of energy. These two values (nutrient limit and energy limit) are then compared and the smaller value represents the number of microorganisms that can be produced over a specified time. MING can also be adapted to investigate other problems of interest as the model can be used in saturated and unsaturated environments and in laboratory situations to establish microbial growth limitations. Other projected uses include investigations of contaminated locations where monitored natural attenuation or engineered bioremediation could be employed.

Carbon↗

Modeling thermal-hydrological response of the unsaturated zone at Yucca Mountain, Nevada, to thermal load at a potential repository.

This paper presents a numerical study on the response of the unsaturated zone (UZ) system of Yucca Mountain to heat generated from decaying radioactive wastes emplaced at the proposed repository. The modeling study is based on the current thermal-hydrological (TH) mountain-scale model, which uses a locally refined 2D north-south cross-section and dual-permeability numerical approach. The model provides a prediction of the mountain-scale TH response under the thermal-load scenario of 1.45 kW/m, while accounting for future climatic changes and the effects of drift ventilation. The TH simulation results show that ventilation of the repository drifts has a large impact on thermal-hydrologic regimes and moisture-flow conditions at the repository. In both cases, with and without ventilation, the TH model predicts dry or reduced liquid saturation near the drifts for over 1000 years, during which liquid flux through the drifts is reduced to either zero or less than the ambient flux. Without ventilation, the model predicts higher temperatures at the repository, but no major moisture redistribution in the UZ except in the areas very near the heated drifts.

Air Movements↗

Modeling dispersion in three-dimensional heterogeneous fractured media at Yucca Mountain.

Highly resolved numerical simulations are conducted to evaluate the longitudinal and transverse dispersivities proposed for use in the larger-scale Yucca Mountain saturated zone (SZ) site-scale model. Two different stochastic continuum models (SCM) that define the spatial variability of permeability are inferred from the observed fracture characteristics and the measured permeabilities. These models are created with a combination of indicator geostatistics and boolean simulation that allow for modeling different correlation lengths and anisotropy ratios at different permeability thresholds as well as the inclusion of large, high-permeability features. Longitudinal and transverse (horizontal and vertical) dispersion through the permeability realizations is evaluated for both distributed and focused source geometries using groundwater flow and streamline particle tracking. These numerical results are compared to behavior predicted by an analytical solution and to dispersivities estimated by an expert panel. Early time transport results are significantly non-Gaussian due to the strong heterogeneity of the fractured medium. At late times, travel distances of 23 correlation lengths, the longitudinal and transverse horizontal dispersivity results are well approximated by the analytical solution and the expert elicitation estimates. The calculated transverse vertical dispersivity values are smaller than those estimated from the analytical solution. Inclusion of high-permeability features of the same size as the model domain with a distributed planar source creates extreme values of the longitudinal and transverse horizontal dispersivity.

Forecasting↗

Resveratrol and other phenolics from the bark of Yucca schidigera roezl.

Five phenolic constituents have been identified in Yucca schidigera bark, and their structures were established by spectral (FABMS and NMR) experiments. These included two known stilbenes, trans-3,4',5-trihydroxystilbene (resveratrol) and trans-3,3',5,5'-tetrahydroxy-4'-methoxystilbene, as well as three novel compounds, yuccaols A, B, and C, with spiro-structures rarely occurring in the plant kingdom. It is suggested that yuccaols A-C are biosynthethized via attachment of a stilbenic derivative to the carbocationic intermediate of the oxidative flavanone-flavonol conversion.

Flavonoids↗

Effects of dietary supplementation with Yucca schidigera Roezl ex Ortgies and its saponin and non-saponin fractions on rat metabolism.

Yucca schidigera Roezl ex Ortgies, family Lillaceae, was fractionated with butan-1-ol to yield a butanol extractable fraction (BE; saponin fraction) and a non-butanol fraction (NBE; non-saponin fraction). Four groups of eight male rats were allowed ad libitum access to diets supplemented with water (control) or 200 mg x kg(-1) total Y. schidigera (TOT) or 200 mg x kg(-1) of each of the fractions (NBE or BE). The effects of dietary supplementation with the fractions and their interactions in TOT were analyzed according to the factorial experimental design by two-way analysis of variance. All three supplementation groups displayed significantly reduced serum urea levels (P < 0.05). The TOT and NBE fractions were found to significantly increase serum insulin levels (P < 0.01) in the absence of any fluctuations in serum glucose levels. Urea cycle enzyme activities, namely, arginase (EC 3.5.3.1) and argininosuccinate lyase (EC 4.3.2.1), were significantly decreased (P < 0.05) in vivo, although no effect was observed in vitro. Both fractions displayed effects, indicating that the active constituents are present in both fractions.

Animal Feed↗

Steroidal saponins of Yucca schidigera Roezl.

Eight steroidal saponins have been isolated from Yucca schidigera Roezl. trunk, and their structures were established by spectral (MS and NMR) techniques. These included three novel furostanol glycosides including 3-O-beta-D-glucopyranosyl-(1-->2)-[beta-D-xylopyranosyl-(1-->3)]-beta-D-glucopyranosyl-5 beta(25R)-furostan-3 beta,22 alpha,26-triol 26-O-beta-D-glucopyranoside, 3-O-beta-D-glcopyranosyl-(1-->2)-[beta-D-xylopyranosyl-(1-->3)]-beta-D-glucopyranosyl-5 beta(25R)-furost-20(22)-en-3 beta,26-diol-12-one 26-O-beta-D-glucopyranoside, 3-O-beta-D-glcopyranosyl-(1-->2)-beta-D-glucopyranosyl-5 beta(25R)-furostan-3 beta,22 alpha,26-triol 26-O-beta-D-glucopyranoside, and five known spirostanol glycosides. On the basis of the extraction efficiency, furostanol glycosides made up only 6.8% of total saponins isolated.

Liliaceae↗

Effect of steroidal saponin from Yucca schidigera extract on ruminal microbes.

The effects of steroidal saponins (SAP) isolated from Yucca schidigera extract on ruminal bacteria and fungi were investigated in pure culture studies. Prevotella bryantii, Ruminobacter amylophilus, Selenomonas ruminantium and Streptococcus bovis were cultured through ten 24-h transfers in ruminal fluid medium containing 0 or 25 microg SAP ml-1 (measured as smilagenin equivalents). The four strains, each non-exposed or pre-exposed to SAP, were then inoculated into medium containing 0 or 250 microgram smilagenin equivalents ml-1 and 24-h growth curves were determined. The cellulolytic ruminal bacteria Ruminococcus flavefaciens, Fibrobacter succinogenes and Rc. albus were cultured for 72 h on Whatman no. 1 filter paper in medium containing 0, 9, 90 or 180 microgram SAP ml-1 for the determination of filter paper digestion and endoglucanase activity. The ruminal bacteria differed in their responses to SAP. Steroidal saponins in the medium reduced the growth of Strep. bovis (P < 0.01 at 2, 3, 4, 5, 6 and 8 h), P. bryantii (P < 0.05 at 4, 5, 6, 8, 10 and 24 h) and Rb. amylophilus (P < 0.05 at 14 and 24 h), but the growth of S. ruminantium was enhanced (P < 0.05) at 10, 14 and 24 h. The growth curves of all four non-cellulolytic species were similar (P > 0.05) between pre-exposed and non-exposed cultures and the concentrations of total SAP and soluble (deglycosylated) SAP in the liquid fraction were unchanged (P > 0.05) over time. Steroidal saponins inhibited the digestion of filter paper by all three cellulolytic bacteria, but F. succinogenes was less (P < 0.05) sensitive to SAP and more (P < 0. 05) effective at deglycosylating SAP than were Rc. flavefaciens or Rc. albus. Transmission electron microscopy revealed that SAP altered the cell walls of the SAP-inhibited non-cellulolytic bacteria. The ruminal fungi, Neocallimastix frontalis and Piromyces rhizinflata, were cultured on filter paper in medium containing 0, 0. 45, 2.25 or 4.5 microgram SAP ml-1. Filter paper digestion by both fungi was completely inhibited by 2.25 microgram SAP ml-1. Steroidal saponins from Y. schidigera inhibit cellulolytic ruminal bacteria and fungi, but their effects on amylolytic bacteria are species dependent and similar to the effects of ionophores. As such, SAP may be useful in nutritional applications targeting starch-digesting ruminal micro-organisms.

Amyloid↗

Limitations on upper bound dose to adults due to intake of 129I in drinking water and a total diet-implications relative to the proposed Yucca Mountain high level radioactive waste repository.

The purpose of this report is to comment on the potential annual doses due to the intake by adults of I, an important radionuclide in the proposed high-level radioactive waste repository at Yucca Mountain. An often overlooked, but significant, factor is that, in this case, the ground water, which would be the primary transport vehicle for any releases, contains relatively high concentrations of stable iodine (127I); in fact, the median concentration in the ground water in the vicinity of the proposed repository is 5.0 microg L-1. In comparison, the maximum concentration of 129I in the ground water, due to potential releases of 129I during the first 10,000 y following closure of the repository, is estimated to be approximately 3.7 x 10(-7) Bq L-1 (approximately 10(-5) pCi L-1). This would result in a 127I to 129I ratio in the water of almost 90 million to one. Assuming no other sources of these two isotopes were being consumed, this would place an upper bound on the annual committed thyroid dose of 1.2 x 10(-1) mSv (1.2 x 10(-1) mrem), less than one thousandth of the Ground Water Protection Standard of 4 mrem y-1. When the additional intake of stable and radioactive iodine in other components of the diet is considered, the overall ratio of 127I to 129I would be more than 2 billion to one. The would place an upper bound on the annual committed effective dose of approximately 2.5 x 10(-8) mSv (approximately 2.5 x 10(-6) mrem), less than one millionth of the Individual Protection Standard of 0.15 mSv (15 mrem).

Adult↗

Sensitivity analyses of the standards for the proposed Yucca Mountain repository--a review, evaluation, and commentary.

The standards and regulations for the proposed Yucca Mountain high level radioactive waste repository, which were developed and promulgated by the U.S. Environmental Protection Agency and the U.S. Nuclear Regulatory Commission, respectively, are complex and challenging. A major reason is that they are divided into three parts, an Individual Protection Standard, a Human Intrusion Standard, and multiple Ground Water Protection Standards. Because the individual parts are not fully integrated, the one that controls under a specific set of circumstances depends on the radionuclide being evaluated, its mechanisms of transport, its avenues of intake, and differences in the specified limits. Although the coefficients in Federal Guidance Report (FGR) No. 11 are being used to estimate the doses, other sources (for example, Title 10, CFR, Part 20, and/or FGR No. 13) may deserve consideration. Since the regulations specify that the reasonably maximally exposed individual is an adult, this leaves unanswered the estimated doses to other age groups, such as infants and adolescents. Summarized in this paper are comparisons of the dose coefficients for different age groups, as well as evaluations of the sensitivity of effective and organ dose estimates for adults, depending on the source of the coefficients. All the latter analyses were based only on the consumption of ground water. While the dose estimates are different, depending on the sources of the coefficients, this was not unexpected. What these evaluations demonstrate is the caution that must be exercised to ensure that a full range of considerations is taken into account in interpreting the outcome of the dose assessments being made with respect to the proposed repository.

Body Burden↗

Interaction of auxin and ERECTA in elaborating Arabidopsis inflorescence architecture revealed by the activation tagging of a new member of the YUCCA family putative flavin monooxygenases.

The aboveground body of higher plants has a modular structure of repeating units, or phytomers. As such, the position, size, and shape of the individual phytomer dictate the plant architecture. The Arabidopsis (Arabidopsis thaliana) ERECTA (ER) gene regulates the inflorescence architecture by affecting elongation of the internode and pedicels, as well as the shape of lateral organs. A large-scale activation-tagging genetic screen was conducted in Arabidopsis to identify novel genes and pathways that interact with the ER locus. A dominant mutant, super1-D, was isolated as a nearly complete suppressor of a partial loss-of-function allele er-103. We found that SUPER1 encodes YUCCA5, a novel member of the YUCCA family of flavin monooxygenases. The activation tagging of YUCCA5 conferred increased levels of free indole acetic acid, increased auxin response, and mild phenotypic characteristics of auxin overproducers, such as elongated hypocotyls, epinastic cotyledons, and narrow leaves. Both genetic and cellular analyses indicate that auxin and the ER pathway regulate cell division and cell expansion in a largely independent but overlapping manner during elaboration of inflorescence architecture.

Amino Acid Sequence↗

Auxin biosynthesis by the YUCCA genes in rice.

Although indole-3-acetic acid (IAA), the predominant auxin in plants, plays a critical role in various plant growth and developmental processes, its biosynthesis and regulation have not been clearly elucidated. To investigate the molecular mechanisms of IAA synthesis in rice (Oryza sativa), we identified seven YUCCA-like genes (named OsYUCCA1-7) in the rice genome. Plants overexpressing OsYUCCA1 exhibited increased IAA levels and characteristic auxin overproduction phenotypes, whereas plants expressing antisense OsYUCCA1 cDNA displayed defects that are similar to those of rice auxin-insensitive mutants. OsYUCCA1 was expressed in almost all of the organs tested, but its expression was restricted to discrete areas, including the tips of leaves, roots, and vascular tissues, where it overlapped with expression of a beta-glucuronidase reporter gene controlled by the auxin-responsive DR5 promoter. These observations are consistent with an important role for the rice enzyme OsYUCCA1 in IAA biosynthesis via the tryptophan-dependent pathway.

Cloning, Molecular↗

Examining genetic structure in a bogus yucca moth: a sequential approach to phylogeography.

Understanding the phylogeography of a species requires not only elucidating patterns of genetic structure among populations, but also identifying the possible evolutionary events creating that structure. The use of a single phylogeographic test or analysis, however, usually provides a picture of genetic structure without revealing the possible underlying evolutionary causes. We used current analytical techniques in a sequential approach to examine genetic structure and its underlying causes in the bogus yucca moth Prodoxus decipiens (Lepidoptera: Prodoxidae). Both historical biogeography and recent human transplantations of the moth's host plants provided a priori expectations of the pattern of genetic structure and its underlying causes. We evaluated these expectations by using a progression of phylogenetic, demographic, and population genetic analyses of mtDNA sequence data from 476 individuals distributed across 25 populations that encompassed the range of P. decipiens. The combination of these analyses revealed that much of the genetic structure has evolved more recently than suggested by historical biogeography, has been influenced by changes in demography, and can be best explained by long distance dispersal and isolation by distance. We suggest that performing a suite of analyses that focus on different temporal scales may be an effective approach to investigating the patterns and causes of genetic structure within species.

Animals↗

Waste package performance evaluations for the proposed high-level nuclear waste repository at Yucca Mountain.

The evaluation studies of the proposed repository for long-term storage of spent nuclear fuel and high-level nuclear waste at Yucca Mountain, Nevada, are underway. Fulfillment of the requirements for limiting dose to the public, which includes containment of the radioactive waste emplaced in the proposed repository and subsequent slow release of radionuclides from the Engineered Barrier System (EBS) into the geosphere, will rely on a robust waste container design, among other EBS components. Part of the evaluation process involves sensitivity studies aimed at elucidating which model parameters contribute most to the waste package and overlying drip shield degradation characteristics. The model parameters identified for this study include (1) general corrosion rate parameters and (2) stress corrosion cracking (SCC) parameters. Temperature dependence and parameter uncertainty are evaluated for the general corrosion rate model parameters while for the SCC model parameters, uncertainty treatment of stress intensity factor, crack initiation threshold, and manufacturing flaw orientations are evaluated. Based on these evaluations new uncertainty distributions are generated and recommended for future analyses. Also, early waste package failures due to improper heat treatment were added to the waste package degradation model. The results of these investigations indicate that the waste package failure profiles are governed by the manufacturing flaw orientation model parameters.

Journal Article↗

Ramifications of risk measures in implementing quantitative performance assessment for the proposed radioactive waste repository at Yucca Mountain, Nevada, USA.

As part of its preparation to review a potential license application from the U.S. Department of Energy (DOE), the U.S. Nuclear Regulatory Commission (NRC) is examining the performance of the proposed Yucca Mountain nuclear waste repository. In this regard, we evaluated postclosure repository performance using Monte Carlo analyses with an NRC-developed system model that has 950 input parameters, of which 330 are sampled to represent system uncertainties. The quantitative compliance criterion for dose was established by NRC to protect inhabitants who might be exposed to any releases from the repository. The NRC criterion limits the peak-of-the-mean dose, which in our analysis is estimated by averaging the potential exposure at any instant in time for all Monte Carlo realizations, and then determining the maximum value of the mean curve within 10000 years, the compliance period. This procedure contrasts in important ways with a more common measure of risk based on the mean of the ensemble of peaks from each Monte Carlo realization. The NRC chose the former (peak-of-the-mean) because it more correctly represents the risk to an exposed individual. Procedures for calculating risk in the expected case of slow repository degradation differ from those for low-probability cases of disruption by external forces such as volcanism. We also explored the possibility of risk dilution (i.e., lower calculated risk) that could result from arbitrarily defining wide probability distributions for certain parameters. Finally, our sensitivity analyses to identify influential parameters used two approaches: (1). the ensemble of doses from each Monte Carlo realization at the time of the peak risk (i.e., peak-of-the-mean) and (2). the ensemble of peak doses calculated from each realization within 10000 years. The latter measure appears to have more discriminatory power than the former for many parameters (based on the greater magnitude of the sensitivity coefficient), but can yield different rankings, especially for parameters that influence the timing of releases.

Journal Article↗

The vulnerability of the Nevada visitor economy to a repository at Yucca Mountain.

This article reviews the studies commissioned by the Nevada Nuclear Waste Project Office to estimate the economic impact of a high-level nuclear waste repository at Yucca Mountain. Case studies found that visitor impacts occur for some analogous facilities, but not for others. Assessments of behavioral intent indicate that at least some economic agents would avoid visiting Nevada under repository scenarios. A third set of studies tested the risk-aversion and negative-imagery models of visitor decision making; people avoid visiting places associated with either a significant health risk or negative imagery, but it has yet to be shown that a repository would induce these perceptions in nearby places. In sum, the NWPO-sponsored studies suggest the potential for visitor impacts, but do confirm that these effects will occur.

Humans↗

Using temperature to test models of flow near Yucca Mountain, Nevada.

Ground water temperatures in the fractured volcanic aquifer near Yucca Mountain, Nevada, have previously been shown to have significant spatial variability with regions of elevated temperatures coinciding roughly with near-vertical north-south trending faults. Using insights gained from one-dimensional models, previous investigators have suggested upwelling along faults from an underlying aquifer as a likely explanation for this ground water temperature pattern. Using a three-dimensional coupled flow and heat-transport model, we show that the thermal high coinciding with the Paintbrush fault zone can be explained without significant upwelling from the underlying aquifer. Instead, the thermal anomaly is consistent with thermal conduction enhanced slightly by vertical ground water movement within the volcanic aquifer sequence. If more than approximately 400 m3/day of water enters the volcanic aquifer from below along a 10 km fault zone, the calculated temperatures at the water table are significantly greater than the measured temperatures. These results illustrate the potential limitations in using one-dimensional models to interpret ground water temperature data, and underscore the value in combining temperature data with fully coupled three-dimensional simulations.

Environmental Monitoring↗

Anomalous strain accumulation in the yucca mountain area, nevada

Global Positioning System (GPS) surveys from 1991 to 1997 near Yucca Mountain, Nevada, indicate west-northwest crustal elongation at a rate of 1.7 +/- 0.3 millimeters per year (1final sigma) over 34 kilometers, or 50 +/- 9 nanostrain per year. Global Positioning System and trilateration surveys from 1983 to 1997 on a 14-kilometer baseline across the proposed repository site for high-level radioactive waste indicate that the crust extended by 0.7 to 0.9 +/- 0.2 millimeter per year (50 to 64 +/- 14 nanostrain per year), depending on the coseismic effect of the Ms 5.4 1992 Little Skull Mountain earthquake. These strain rates are at least an order of magnitude higher than would be predicted from the Quaternary volcanic and tectonic history of the area.

Journal Article↗

Influence of Yucca shidigera extract on ruminal ammonia concentrations and ruminal microorganisms.

An extract of the desert plant Yucca shidigera was assessed for its possible benefit in ruminal fermentation. The extract bound ammonia in aqueous solution when concentrations of ammonia were low (up to 0.4 mM) and when the extract was added at a high concentration to the sample (20%, vol/vol). The apparent ammonia-binding capability was retained after autoclaving and was decreased slightly following dialysis. Acid-precipitated extract was inactive. No evidence of substantial ammonia binding was found at higher ammonia concentrations (up to 30 mM). When Y. shidigera extract (1%, vol/vol) was added to strained rumen fluid in vitro, a small (6%) but significant (P < 0.05) decrease in ammonia concentration occurred, apparently because of decreased proteolysis. Inclusion of Y. shidigera extract (1%, vol/vol) in the growth medium of the rumen bacterium Streptococcus bovis ES1 extended its lag phase, while growth of Butyrivibrio fibrisolvens SH13 was abolished. The growth of Prevotella (Bacteroides) ruminicola B(1)4 was stimulated, and that of Selenomonas ruminantium Z108 was unaffected. Protozoal activity, as measured by the breakdown of 14C-leucine-labelled S. ruminantium in rumen fluid incubated in vitro, was abolished by the addition of 1% extract. The antimicrobial activities were unaffected by precipitating tannins with polyvinylpyrrolidone, but a butanol extract, containing the saponin fraction, retained its antibacterial and antiprotozoal effects. Saponins from other sources were less effective against protozoa than Y. shidigera saponins. Y. shidigera extract, therefore, appears unlikely to influence ammonia concentration in the rumen directly, but its saponins have antimicrobial properties, particularly in suppressing ciliate protozoa, which may prove beneficial to ruminal fermentation and may lead indirectly to lower ruminal ammonia concentrations.

Ammonia↗