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PubMed2005

Frequency and category factors in the reduction and assimilation of function words: EPG and acoustic measures.

Many studies have observed phonetic and phonological differences between function words and content words. However, as many of the most commonly cited function words are also very high in frequency, it is unclear whether these differences are the result of syntactic category or word frequency. This study attempts to determine whether syntactically defined function words are indeed phonologically and phonetically reduced or assimilated when word frequency is balanced. Three experiments were designed to distinguish the relative contributions of the factors of category and frequency on phonetic and phonological reduction and assimilation. Overall results suggest that syntactic category and word frequency interact with phonetic and phonological processes in a more complex way than previously believed. Experiment 1 measured final t/d dropping, a reduction process, using electropalatography (EPG). Experiment 2 examined vowel reduction using acoustic measures. In Experiment 3, palatalization, an assimilation process, was examined using EPG. Results showed that t/d dropping responds to the factor of syntactic category, whereas palatalization is affected by word frequency; vowel reduction responded to both factors, with a dominant syntactic category effect and a secondary within-category frequency effect. The implications of these findings for models of lexical representation and theories of language acquisition are discussed.

Electromyography↗

PubMed1989

Gastric vagal-splanchnic interactions in the brainstem of the cat.

Brainstem unitary responses to gastric vagal-splanchnic nerve interactions were evaluated in anesthetized cats during electrical stimulation of the nerves. The gastric branches of the dorsal and ventral vagal trunks which serve the proximal stomach were electrically stimulated while recording in nucleus solitarius in the brainstem to identify evoked unitary responses. The vagally evoked brainstem responses were orthodromic in nature as evidenced by a slight variability in latency, reduction in the number of spikes upon decreasing stimulus strength and failure to follow higher stimulus frequencies. Interactions between gastric vagal input from the proximal stomach and left greater splanchnic nerve were evaluated by simultaneously stimulating the nerves electrically. Forty-three (16%) of the 265 gastric vagally evoked brainstem responses recorded were inhibited by simultaneously activating the left greater splanchnic nerve. The gastric vagally evoked responses inhibited by splanchnic input were nearly equally divided between the dorsal and ventral vagal trunks. Eighty-eight percent of those vagally evoked brainstem units inhibited by splanchnic input showed complete inhibition suggesting secure synaptic coupling. In addition, 3 gastric vagally activated brainstem units were identified which were also activated by greater splanchnic input. The latency of the splanchnic evoked brainstem response in these 3 units ranged from 55 to 89 ms compared to a mean latency of 290 ms (S.D. +/- 50 ms) for the vagally evoked brainstem response. Splanchnic electrical stimulation usually produced an inhibitory effect upon the vagally evoked brainstem response which persisted for approximately 30 s following termination of splanchnic stimulation.(ABSTRACT TRUNCATED AT 250 WORDS)

Action Potentials↗

PubMed2007

Habitat modification alters the structure of tropical host-parasitoid food webs.

Global conversion of natural habitats to agriculture has led to marked changes in species diversity and composition. However, it is less clear how habitat modification affects interactions among species. Networks of feeding interactions (food webs) describe the underlying structure of ecological communities, and might be crucially linked to their stability and function. Here, we analyse 48 quantitative food webs for cavity-nesting bees, wasps and their parasitoids across five tropical habitat types. We found marked changes in food-web structure across the modification gradient, despite little variation in species richness. The evenness of interaction frequencies declined with habitat modification, with most energy flowing along one or a few pathways in intensively managed agricultural habitats. In modified habitats there was a higher ratio of parasitoid to host species and increased parasitism rates, with implications for the important ecosystem services, such as pollination and biological control, that are performed by host bees and wasps. The most abundant parasitoid species was more specialized in modified habitats, with reduced attack rates on alternative hosts. Conventional community descriptors failed to discriminate adequately among habitats, indicating that perturbation of the structure and function of ecological communities might be overlooked in studies that do not document and quantify species interactions. Altered interaction structure therefore represents an insidious and functionally important hidden effect of habitat modification by humans.

Agriculture↗

PubMed2001

The kissing hairpin sequence promotes recombination within the HIV-I 5' leader region.

The role of RNA-RNA template interactions in facilitating recombination during reverse transcription of minus strand DNA has been examined. The tested hypothesis is that template switching by reverse transcriptase is promoted at sites where homologous regions of two RNAs are brought in close proximity via stable intertemplate interactions. Frequency and distribution of template switching between homologous donor and acceptor RNAs were examined within the human immunodeficiency virus type I (HIV-I) 5'-untranslated region (UTR) containing the dimer initiation sequence (DIS). Results were compared with control nondimerizing templates from the pol region. The dimerizing UTR templates displayed a 4-fold higher transfer efficiency than the control. A striking 53% of transfers in the UTR mapped near the DIS, of which two-thirds occurred immediately 5' to this sequence. In the UTR template, deletion of the DIS hairpin disrupted template dimerization and caused a 4-fold drop in transfer efficiency. Insertion of the DIS within the pol template increased both dimerization and transfer efficiency. Transfer distributions revealed that in both sets of templates, DIS-induced dimerization increased the efficiency of transfers across the whole template, with the transfers peaking around the dimerization site. Overall, these results suggest that template dimerization facilitated by the unique geometry of the DIS-promoted kissing interactions effectively promotes recombination within the HIV-I 5'-UTR.

5' Untranslated Regions↗

PubMed1998

Standards of laboratory practice: analgesic drug monitoring. National Academy of Clinical Biochemistry.

Analgesics are the most commonly consumed over-the-counter preparations in the United States. They are used in the treatment of various pain syndromes and other medical conditions. Although analgesics are generally perceived to be safe agents, serious toxicity may occur in the setting of acute overdose, chronic abuse, or overuse. The indications for therapeutic drug monitoring in patients using these medications appropriately is as yet not well defined. The emphasis of this discussion, therefore, is on recommendations for monitoring in situations where toxicity is suspected. Preanalytical, analytical, and practice issues including drug interactions, frequency of monitoring, pertinent ancillary tests, reporting, and special patient groups at risk for toxicity are reviewed. Recent information from a major manufacturer of evacuated tubes arguing against the use of gel tubes for blood collection for drug monitoring is included. Colorimetric/enzymatic/immunoassays for the routine/stat monitoring of acetaminophen and salicylate and diflunisal cross-reactivity with most of the currently used salicylate assays are presented. Achiral and chiral chromatographic assays and newly introduced columns such as restricted access media and/or automated chromatographic systems are reviewed for the analysis of ibuprofen, naproxen, and the recently introduced tramadol. Finally, concepts regarding future directions including drug chirality and chiral analysis are presented.

Alcoholism↗

PubMed2002

The interaction of ambient frequency and feature complexity in the diphthong errors of children with phonological disorders.

This study examined the interaction of ambient frequency and feature complexity in the diphthong errors produced by Cantonese-speaking children with phonological disorders. A total of 611 diphthongs produced by 13 Cantonese-speaking children with speech disorders were subjected to perceptual analysis. The percentage accuracy of production and error patterns was examined. Perceptual analysis showed that /(see text)i/ and /ui/ were most frequently in error, whereas /ei/, /ou/, and /(see text)u/ were least frequently in error. Diphthong errors (usually diphthong reduction) arise as a function of both ambient frequency and feature complexity. The combination of ambient frequency and feature complexity yields a complexity metric reflecting accuracy of production. Treatment guidelines include consideration of three basic factors: ambient frequency, feature complexity, and error patterns.

Child↗

PubMed1995

Laminar organization of frequency-defined local axons within and between the inferior colliculi of the guinea pig.

We present a comprehensive description of the local (intrinsic and commissural) connections in the central nucleus of the inferior colliculi (CNICs) in guinea pig. Focal injections of the anterograde tracer biocytin were made into physiologically identified loci of the CNIC and the spatial organisation of the labeled fibres was revealed with computer-assisted three-dimensional (3-D) reconstruction. The intrinsic fibres form a series of V-shaped laminar plexuses composed of fibres bearing both terminal and en passant boutons. Each laminar plexus has a central wing located in the CNIC that extends into the dorsal cortex and an external wing located in the external cortex. The edge where the two wings intersect delimits the lateral border of the central nucleus with the external cortex. The density of labeled terminals was consistently lower in the cortices than in the CNIC. The laminar plexus connects points of similar frequency within the CNIC. Seen in 3-D, the location, orientation, shape, and area of the laminar plexus vary as a function of best frequency. The commissural fibres ending in the contralateral IC to the injection also form a laminar plexus which is symmetrical to the ipsilateral plexus. Electrolytic lesions placed in the contralateral IC at sites with best frequencies corresponding to those of the injection coincided with the terminals of the commissural fibres in most instances. Possible patterns for the organisation of these connections (point-to-point and diverging) are discussed. Three systems of peripheral axons to the laminar plexus are described: parallel, oblique, and perpendicular to the central wing. The novel parallel system has terminals in both ICs that run parallel to the central wing. It might constitute the anatomical basis for across-frequency interactions. The oblique and perpendicular systems are fibres of passage projecting to the commissure and brachium of the IC, respectively.

Acoustic Stimulation↗

PubMed1988

The understanding and use of interpersonal gestures by autistic and Down's syndrome children.

Autistic adolescents with mild, moderate, and severe degrees of mental retardation, Down's syndrome adolescents, and clinically normal 4-, 5-, and 6-year-old children were compared in their ability to understand a set of simple instrumental gestures. Almost all gestures were perfectly understood, that is, correctly responded to, by normal children from age 5 onwards, and by all the handicapped groups, regardless of diagnosis or degree of retardation. However, the ability to initiate such gestures on verbal request was generally less good, especially in the less able autistic groups. The same subjects were unobtrusively observed in the playground and during mealtime at their schools. Peer interactions were least frequent in the autistic subjects, regardless of degree of mental retardation. However, relative to interaction frequency, the autistic group used nonverbal instrumental gestures as a means of communication to the same extent as the other groups. Unlike Down's syndrome adolescents, or normal preschool children, no autistic adolescent ever used expressive gestures.

Adolescent↗

PubMed1991

Frequency- and length-dependent tension development in rat heart muscles exposed to isoflurane and halothane.

Using 22 isolated rat ventricular muscle preparations, we investigated whether or not the increase in preload and/or contraction frequency may counteract the negative inotropy of both isoflurane (2.0%) and halothane (1.0%). Increases in preload from 94% of Lmax (the length where muscles produce the maximal tension) to Lmax did not alter significantly the percent decrements in tension development caused by either isoflurane or halothane. The increases in contraction frequency from 0.1 to 0.6 Hz augmented the depressant effect of isoflurane significantly ( P < 0.001), while the depressant effect of halothane was not altered at these contraction frequencies. Small but significant counteraction occurred in the depressant effects of halothane at 0.8 and 1.6 Hz ( P = 0.002). These changes in intracellular mechanism(s), resulted from the increase in contraction frequency, interacted with the two anesthetics on tension development, while these may not be the case for the increase in preload.

Journal Article↗

PubMed2026

Integrated single-cell and spatial transcriptomic analyses reveal malignant epithelial glycolytic heterogeneity and spatial niche remodeling during colorectal cancer progression.

Colorectal cancer (CRC) progression is shaped by metabolic reprogramming and complex interactions within the tumor microenvironment. However, the cellular heterogeneity, spatial organization, and clinical relevance of glycolytic activity in CRC remain incompletely understood. In this study, we integrated single-cell RNA sequencing, bulk transcriptomics, and spatial transcriptomics data to systematically characterize glycolytic heterogeneity in CRC. Glycolytic activity was quantified using five independent scoring methods, consistently showing that epithelial cells exhibited the highest glycolytic activity across the two single-cell cohorts. Stratification of CopyKAT-verified aneuploid malignant epithelial cells into high-glycolysis (HG) and low-glycolysis (LG) subgroups by glycolysis scores revealed that HG cells exhibited higher stemness scores and chromosomal copy number variations. Cell-cell communication analysis revealed that, compared with LG cells, HG cells exhibited increased interaction frequency and strength with immune and stromal populations, indicating enhanced malignant epithelial-microenvironment crosstalk. Spatial transcriptomics analyses further revealed that glycolytic activity varied across normal colorectal tissue, primary CRC, and colorectal liver metastases, accompanied by progressive remodeling of epithelial-associated spatial niches and MIF-mediated intercellular communication. Bulk transcriptomic analysis identified a glycolysis-related prognostic signature with robust predictive performance, which served as an independent prognostic factor for overall survival in CRC cohorts. Collectively, these findings indicate that glycolytic heterogeneity is a key feature of CRC malignant epithelial cells and is closely associated with tumor progression, microenvironmental remodeling, and clinical outcomes.

Humans↗

PubMed1984

Perturbed gamma-gamma angular correlation studies of 111In bound to double and single stranded DNA.

Using 111In as a probe, the dynamics of double and single stranded DNA have been studied by performing time-differential gamma-gamma angular correlation measurements on the 173-247 keV transitions in 111Cd. Binding of indium to DNA was investigated by analysis of sedimentation profiles, thermal transition spectrophotometry and electrochromatography. Rotational correlation times tau c greater than or equal to 400 ns and tau c = 27 +/- 7 ns were obtained respectively for double stranded (native) and single stranded (denatured) DNA. The corresponding quadrupole interaction frequencies were omega 0 = 711 +/- 15 Mrad/s and omega 0 = 151 +/- 13 Mrad/s.

DNA↗

PubMed2005

Response to temporal parameter fluctuations in biochemical networks.

Metabolic response coefficients describe how variables in metabolic systems, like steady state concentrations, respond to small changes of kinetic parameters. To extend this concept to temporal parameter fluctuations, we define spectral response coefficients that relate Fourier components of concentrations and fluxes to Fourier components of the underlying parameters. It is also straightforward to generalize other concepts from metabolic control theory, such as control coefficients with their summation and connectivity theorems. The first-order response coefficients describe forced oscillations caused by small harmonic oscillations of single parameters: they depend on the driving frequency and comprise the phases and amplitudes of the concentrations and fluxes. Close to a Hopf bifurcation, resonance can occur: as an example, we study the spectral densities of concentration fluctuations arising from the stochastic nature of chemical reactions. Second-order response coefficients describe how perturbations of different frequencies interact by mode coupling, yielding higher harmonics in the metabolic response. The temporal response to small parameter fluctuations can be computed by Fourier synthesis. For a model of glycolysis, this approximation remains fairly accurate even for large relative fluctuations of the parameters.

Animals↗

PubMed1996

Effects of lutein and cholesterol on alkyl chain bending in lipid bilayers: a pulse electron spin resonance spin labeling study.

A short pulse saturation recovery electron spin resonance technique has been used to study the effects of polar carotenoid-lutein and cholesterol on interactions of 14N:15N stearic acid spin-label pairs in fluid-phase phosphatidylcholine (PC) membranes. Bimolecular collisions for pairs consisting of various combinations of [14N]-16-, [14N]-10-, [14N]-7-, or [14N]-5-doxylstearate and [15N]-16-doxylstearate in dimyristoyl-PC (DMPC) or egg yolk PC (EYPC) membranes were measured at 27 degrees C. In the absence and presence of lutein or cholesterol for both lipid systems, the collision rates were ordered as 16:5 < 16:7 < 16:10 < 16:16. For all spin-label pairs studied, interaction frequencies were greater in DMPC than in EYPC. Polar carotenoid-lutein reduces the collision frequency for all spin-label pairs, whereas cholesterol reduces the collision frequency for 16:5 and 16:7 pairs and increases the collision frequency in the membrane center for 16:10 and 16:16 pairs. The presence of unsaturated alkyl chains greatly reduces the effect of lutein but magnifies the effect of cholesterol in the membrane center. The observed differences in the effects of these modifiers on alkyl chain bending result from differences in the structure of cholesterol and polar carotenoid and from their different localization within the lipid bilayer membrane. These studies further confirm the occurrence of vertical fluctuations of alkyl chain ends toward the bilayer surface.

Cholesterol↗

PubMed1997

Across-frequency nonlinear inhibition by GABA in processing of interaural time difference.

The barn owl uses the interaural time difference (ITD) to determine the azimuth of a sound source. Narrowband ITD-sensitive neurons cannot distinguish a given ITD from those that produce the same interaural phase difference (phase ambiguity). Neurons in the external nucleus of the inferior colliculus (ICx) resolve the ambiguity by gathering ITD information across many frequencies, thereby suppressing false responses (side peaks, SP) relative to the true ITD (the main peak, MP) in a response versus ITD curve. This process was quantitatively studied by comparing the ITD curve for a pair of tones presented simultaneously (two-tone curve) to the simple sum (predicted curve) of the individual ITD curves for the same tones presented separately. Sixteen of the 39 neurons tested did not show a significant difference in MP and SP responses between these curves (category I); 14 neurons showed significant SP suppression (category II). During iontophoretic application of bicuculline methiodide, a GABA(A) antagonist, most (n = 7/8) category II neurons lost nonlinear SP suppression and became linear, whereas category I neurons retained linear summation (n = 3/3). Thus, the nonlinear cross-frequency interaction of ITD responses in ICx neurons was mediated mostly by GABAergic inhibition, which enhanced SP suppression, and helped resolve phase ambiguity.

Acoustic Stimulation↗

PubMed2001

Study of nuclear quadrupole interactions in different environments of decaying atoms of 75Se by sum peak method.

The sum peak intensity I400 (279 + 121 keV) relative to its singles peak intensity I279 or I121 has been determined in various environments of 75Se by gamma-gamma summing technique in a single HPGe detector. The change in intensity has been used to determine nuclear quadrupole interaction frequencies and electric field gradient components in different environments, e.g. Se-glycerol, Se-hydrochloric acid (HCl), Se-perchloric acid (HClO4), Se-blood samples with and without anti-coagulant, Se-alanine and Se-cysteine at different pH values. The electric field gradient is found to vary with chemical complex formation.

Journal Article↗

PubMed1993

Visual word recognition: a multistage activation model.

Although many models of word recognition have postulated loci for the simple effects of Context, Stimulus Quality, and Word Frequency, most of them are problematic in that they do not account for the pattern of joint effects among these factors. The experiments reported here show that, among other things, Word Frequency interacts with Context but is additive with Stimulus Quality in the context of a lexical decision experiment that also produces an interaction between Stimulus Quality and Context. The pattern of joint effects among these factors is accommodated by a multistage activation model that is based on the framework proposed by Besner and Smith (1992a).

Adult↗

PubMed2006

Single- versus dual-process models of lexical decision performance: insights from response time distributional analysis.

This article evaluates 2 competing models that address the decision-making processes mediating word recognition and lexical decision performance: a hybrid 2-stage model of lexical decision performance and a random-walk model. In 2 experiments, nonword type and word frequency were manipulated across 2 contrasts (pseudohomophone-legal nonword and legal-illegal nonword). When nonwords became more wordlike (i.e., BRNTA vs. BRANT vs. BRANE), response latencies to nonwords were slowed and the word frequency effect increased. More important, distributional analyses revealed that the Nonword Type = Word Frequency interaction was modulated by different components of the response time distribution, depending on the specific nonword contrast. A single-process random-walk model was able to account for this particular set of findings more successfully than the hybrid 2-stage model.

Adult↗

PubMed1985

Contrast and spatial frequency components in visual preferences of newborns.

A preferential-looking procedure was used to investigate newborns' responses to square-wave gratings varying in spatial frequency and contrast. A preliminary study confirmed that the gratings used in the experiment were suprathreshold. In the experiment newborns' preference for a grating of 0.1 cycle deg-1 within the peak contrast sensitivity range was examined. Reduction in the contrast of this grating led to a transfer of the preference to a high-contrast grating of the same space-averaged luminance with a spatial frequency outside this range (0.42 cycle deg-1). The findings are discussed with reference to the role of the contrast sensitivity function in pattern preferences of newborns: it is suggested that contrast and spatial frequency interact in determining pattern preferences.

Female↗