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PubMedDate not supplied

Evaluations of magnetic resonance imaging parameters with simple phantoms.

Imaging parameters associated with a clinical magnetic resonance imaging (MRI) system, evaluated with the use of simple and inexpensive phantoms, are described in evaluation of a clinical MRI system. Images, obtained with a Diasonics 0.35-T MRI system using an elliptical whole-body radio frequency coil, are presented which demonstrate geometric distortion, inaccuracy of image dimensions, and artifacts. Measurements of reproducibility and uniformity of both signal intensity and spin-lattice relaxation times are presented for uniform phantoms. Replicate measurements are analyzed by two-way analyses of variance to determine the significance of variations as a function of position and slice. Apparent T1's are not significantly different among the slices for the images analyzed, but there is a significant effect due to position in the field. Direct measurement of the radio frequency field for the center slice follows a pattern which is similar. Spin-lattice relaxation times are compared among two-point calculations and nonlinear four-point calculations, and the effects of pooling data are found to increase the precision of T1 measurements.

Humans↗

PubMed1993

Composite microtubules of the axon: quantitative analysis of tyrosinated and acetylated tubulin along individual axonal microtubules.

We have shown previously, using immunoelectron microscopy, that axonal microtubules (MTs) are composite, consisting of distinct domains that differ in their content of tyrosinated alpha-tubulin (tyr-tubulin). Here, we extend these studies using a novel preparation that permits visualization of individual axonal MTs over distances of several tens of micrometers using conventional immunofluorescence procedures. Neurons are cultured on a substratum of poly-lysine and laminin and then extracted with a MT stabilizing solution containing Triton X-100 and NaCl. These extraction conditions cause a loosening of the axonal MT array so that individual MTs separate from each other for variable distances along their length. We call this phenomenon fraying. Within the axon shaft, individual MTs can often be traced for several tens of micrometers, but fraying is most extensive in the distal 100-200 microns of the axon, where individual MTs can frequently be traced for distances of 50 to 100 microns or more to their plus ends. In some cases MTs separate completely from the axon, permitting visualization of both of their ends. Double-staining of frayed preparations with various combinations of antibodies against tyr-tubulin, acetylated alpha-tubulin (Ac-tubulin) or beta-tubulin, clearly revealed the composite nature of axonal MTs. Composite MTs consisted of two distinct domains, one that was relatively rich in tyr-tubulin and poor in Ac-tubulin, and the other that was relatively poor in tyr-tubulin and rich in Ac-tubulin. The transition between these domains was relatively abrupt, with the tyr-tubulin-rich domain extending from the transition to the plus-end of the MT. Quantitative analyses of fluorescence intensity along individual MTs using digital image processing revealed that the relative amount of tyr-tubulin increased by approximately 800% across the transition, whereas the relative amount of Ac-tubulin decreased by approximately 60%. Within the tyr-tubulin-rich domains, the relative amount of tyr-tubulin was generally not constant, but increased from the transition to the plus-end of the MT in a nonlinear manner. We propose that the specific pattern of variation in the extent of post-translational modification along an individual MT represents a snapshot of that polymer's growth history.

Acetylation↗

PubMed1985

Alcohol consumption and blood pressure.

The relationship between alcohol consumption and systolic and diastolic blood pressure was examined in a representative population sample of 1,429 men and women aged 35-64 years in Auckland, New Zealand during 1982. Univariate plots demonstrated a U-shaped relationship between alcohol consumption and systolic and diastolic blood pressures in men and in women aged 50 years and older, with light and moderate drinkers (less than 0-34 g alcohol/day) having lower blood pressure levels than either nondrinkers or heavy drinkers. No clear relationship was seen in younger women. The U-shaped relationship in men, particularly for systolic blood pressure, remained after controlling for potential confounders, whereas in women aged 50 years and older, there appeared to be a threshold level of approximately four drinks per day, below which drinkers had similar blood pressure levels to nondrinkers. In the multivariate analyses, it was calculated that among men, light and moderate drinkers had systolic levels 4.8 mmHg lower and diastolic levels 1.7 mmHg lower than nondrinkers and heavy drinkers, while among women aged 50-64 years, nondrinkers, light drinkers, or moderate drinkers had systolic levels 10.2 mmHg lower and diastolic levels 4.5 mmHg lower than heavy drinkers. These findings suggest that in men and in women aged 50 years and older, there is a nonlinear relationship between blood pressure and alcohol consumption, and that there is a level of alcohol consumption, of approximately four drinks per day, below which drinkers have either similar or lower blood pressure levels compared to nondrinkers.

Adult↗

PubMed2026

A Deep Model Framework for Morphological Trait Imputation Across Taxonomic Groups.

Incomplete morphological trait data pose major hurdles for trait-based analyses, particularly when missing values, multicollinearity, and sparse sampling constrain inference. These issues limit our ability to quantify trait variation and explore broad patterns of functional differentiation across taxa. Here, we introduce FS-DeepRBFNet, which overcomes these pitfalls through integrating correlation-based feature selection with a dual-layer adaptive radial basis function (RBF) network. This end-to-end approach effectively reduces noise and captures both linear allometric trends and nonlinear morphological relationships. We tested the framework on a large species-level morphological trait dataset of Chinese birds and further validated its cross-taxon transferability using the Amphibian Database (Caudata). FS-DeepRBFNet consistently outperformed conventional methods such as KNN, Random Forest, and XGBoost, demonstrating superior predictive accuracy across multiple traits. Beyond improvements, the model revealed biologically interpretable trait associations and stable cross-taxon generalization. These results demonstrate that FS-DeepRBFNet provides a robust and biologically grounded solution for morphological trait prediction, enabling reliable imputation for comparative phylogenetics, functional ecology, and biodiversity forecasting in data-limited situations.

cross‐taxon transferability↗

PubMed2005

Smoking reduction and the rate of decline in FEV(1): results from the Lung Health Study.

Previous findings from the Lung Health Study have shown that smoking cessation and sustained abstinence substantially reduce the rate of decline in forced expiratory volume (FEV(1)) among smokers with early chronic obstructive pulmonary disease (COPD) when compared with continuing smoking. Intermittent quitters demonstrated rates of FEV(1) decline intermediate between those of sustained quitters and continuing smokers. In this study, data from 1,980 participants were analysed from 10 centres of the Lung Health Study in the USA and Canada. All participants were smokers with mild-to-moderate COPD who were unable to quit smoking at any time during the 1st yr of the study. No linear relationship was found between reduction in cigarettes per day and changes in FEV(1) during the 1st yr of the study. However, examination of the data revealed that this relationship was nonlinear. Further analysis found that smokers who reduced their cigarettes per day to very low amounts had smaller declines in FEV(1) than those who did not. Reduction in cigarettes per day was associated with only minimal changes in the presence of chronic respiratory symptoms. In conclusion, compensatory changes in smoking behaviour may account for the limited and unpredictable impact of smoking reduction on lung function decline and symptom prevalence when compared with smoking cessation.

Administration, Inhalation↗

PubMed1977

Electrocutaneous input-output functions: magnitude estimation and reaction time.

An experiment was conducted on the effect of electrocutaneous stimuli on the generation of two types of input-output functions, and their relationship to each other. The data indicate that increasing electrocutaneous stimulus intensity results in a monotonic growth of magnitude estimation and a negatively decelerating decrease in reaction time. Reaction time approaches an asymptote at high intensities. The dynamic range of reaction time (RT), i.e., the RT which decreases as a function of increases in intensity was subtracted from the asymptotic reaction time (RTmin) for the subsequent analyses. The two-parameter power function provides a better fit for magnitude estimation as well as for RT--RTmin as a function of stimulus intensity than either a two-parameter linear or log-linear equation. When RT--RTmin is plotted as a function of magnitude estimation on a log-log scale, the data are within 4% of the predicted linear equation with a slope of --1, with no significant nonlinear components. If these data are plotted on a linear-linear scale, the linear coefficient is 31% steeper than --1, and a significant nonlinear component is present.

Electric Stimulation↗

PubMed2002

Effect of ethanol on human sleep EEG using correlation dimension analysis.

Our study was designed to investigate the influence of alcohol on sleep using the correlation dimension (D2) analysis. Polysomnography (PSG) was performed in 10 adult human males during a baseline night (BL-N) and an ethanol (0.8 g/kg body weight) night (Et-N). The mean D2 values during the Et-N and BL-N decreased significantly from wakefulness to stages 1, 2, and 3+4 of nonrapid eye movement (non-REM) sleep, and increased during REM sleep. The mean D2 of the sleep electroencephalogram (EEG) during stage 2 during the Et-N was significantly higher than during BL-N. In addition, the mean D2 values of the sleep EEG for the second, third and fourth sleep cycles during the Et-N were significantly higher than during the BL-N. These significant differences between BL-N and Et-N were not recognized by spectral and visual analyses. Our results suggest that D2 is a potentially useful parameter for quantitative analysis of the effect of ethanol on sleep EEGs throughout the entire night.

Adult↗

PubMed2006

Evaluation of absolute quantitation by nonlinear regression in probe-based real-time PCR.

BACKGROUND: In real-time PCR data analysis, the cycle threshold (CT) method is currently the gold standard. This method is based on an assumption of equal PCR efficiency in all reactions, and precision may suffer if this condition is not met. Nonlinear regression analysis (NLR) or curve fitting has therefore been suggested as an alternative to the cycle threshold method for absolute quantitation. The advantages of NLR are that the individual sample efficiency is simulated by the model and that absolute quantitation is possible without a standard curve, releasing reaction wells for unknown samples. However, the calculation method has not been evaluated systematically and has not previously been applied to a TaqMan platform. AIM: To develop and evaluate an automated NLR algorithm capable of generating batch production regression analysis. RESULTS: Total RNA samples extracted from human gastric mucosa were reverse transcribed and analysed for TNFA, IL18 and ACTB by TaqMan real-time PCR. Fluorescence data were analysed by the regular CT method with a standard curve, and by NLR with a positive control for conversion of fluorescence intensity to copy number, and for this purpose an automated algorithm was written in SPSS syntax. Eleven separate regression models were tested, and the output data was subjected to Altman-Bland analysis. The Altman-Bland analysis showed that the best regression model yielded quantitative data with an intra-assay variation of 58% vs. 24% for the CT derived copy numbers, and with a mean inter-method deviation of x 0.8. CONCLUSION: NLR can be automated for batch production analysis, but the CT method is more precise for absolute quantitation in the present setting. The observed inter-method deviation is an indication that assessment of the fluorescence conversion factor used in the regression method can be improved. However, the versatility depends on the level of precision required, and in some settings the increased cost effectiveness of NLR may justify the lower precision.

Computer Systems↗

PubMed1989

Mechanics of the respiratory system during passive exhalation in preterm lambs.

Previous studies have shown large inhomogeneities in the distributions of ventilation and perfusion of newborn infants with hyaline membrane disease. The purpose of this study was to show that measurements of lung mechanics also show evidence of lung inhomogeneities and that a multiple compartment analysis of mechanics gives a more accurate representation of passive exhalation flow and volume than single valued mechanics. We studied 10 sedated preterm lambs (130 d gestation) weighing 2.2 +/- 0.3 kg at 4 h postnatal age. Passive exhalation lung mechanics of the respiratory system were measured by obstructing gas flow near end inhalation then, after pressures within the lung reached equilibrium, allowing the animals to exhale to the atmosphere. Airway pressure and flow signals were monitored by a computer then analyzed using single and multiple compartment analyses. Single compartment analysis of time constant (tau) in s, respiratory system resistance (R) in cm H2O/L/s and quasistatic compliance (C) in mL/cm H2O yielded tau = 0.16 +/- 0.07, R = 92 +/- 17, and C = 1.8 +/- 1.1 (mean +/- SD). Multiple compartment analysis yielded "fast compartment" tau 1 = 0.10 +/- 0.04, R1 = 90 +/- 28, and C1 = 1.1 +/- 0.5 and "slow compartment" tau 2 = 0.25 +/- 0.12, R2 = 503 +/- 288, and C2 = 0.7 +/- 0.6. All of the animals studied exhibited nonlinearity in their flow-volume plots. Calculated flow-volume plots were much more accurately portrayed by the two-compartment analysis than by single valued mechanics. Multiple compartment analysis of lung mechanics may provide useful insight into the pathophysiology of the preterm lab with hyaline membrane disease.

Animals↗

PubMed2002

Comparative longitudinal structural analyses of the growth and decline of multiple intellectual abilities over the life span.

Latent growth curve techniques and longitudinal data are used to examine predictions from the theory of fluid and crystallized intelligence (Gf-Gc theory; J. L. Horn & R. B. Cattell, 1966, 1967). The data examined are from a sample (N approximately 1,200) measured on the Woodcock-Johnson Psycho-Educational Battery-Revised (WJ-R). The longitudinal structural equation models used are based on latent growth models of age using two-occasion "accelerated" data (e.g., J. J. McArdle & R. Q. Bell, 2000; J. J. McArdle & R. W. Woodcock, 1997). Nonlinear mixed-effects growth models based on a dual exponential rate yield a reasonable fit to all life span cognitive data. These results suggest that most broad cognitive functions fit a generalized curve that rises and falls. Novel multilevel models directly comparing growth curves show that broad fluid reasoning (Gf) and acculturated crystallized knowledge (Gc) have different growth patterns. In all comparisons, any model of cognitive age changes with only a single g factor yields an overly simplistic view of growth and change over age.

Adult↗

PubMed1996

The use of system identification techniques in the analysis of oculomotor burst neuron spike train dynamics.

The objective of system identification methods is to construct a mathematical model of a dynamical system in order to describe adequately the input-output relationship observed in that system. Over the past several decades, mathematical models have been employed frequently in the oculomotor field, and their use has contributed greatly to our understanding of how information flows through the implicated brain regions. However, the existing analyses of oculomotor neural discharges have not taken advantage of the power of optimization algorithms that have been developed for system identification purposes. In this article, we employ these techniques to specifically investigate the "burst generator" in the brainstem that drives saccadic eye movements. The discharge characteristics of a specific class of neurons, inhibitory burst neurons (IBNs) that project monosynaptically to ocular motoneurons, are examined. The discharges of IBNs are analyzed using different linear and nonlinear equations that express a neuron's firing frequency and history (i.e., the derivative of frequency), in terms of quantities that describe a saccade trajectory, such as eye position, velocity, and acceleration. The variance accounted for by each equation can be compared to choose the optimal model. The methods we present allow optimization across multiple saccade trajectories simultaneously. We are able to investigate objectively how well a specific equation predicts a neuron's discharge pattern as well as whether increasing the complexity of a model is justifiable. In addition, we demonstrate that these techniques can be used both to provide an objective estimate of a neuron's dynamic latency and to test whether a neuron's initial firing rate (expressed as an initial condition) is a function of a quantity describing a saccade trajectory (such as initial eye position).

Action Potentials↗

PubMed2004

Production of offspring using current income and reserves: size-number trade-off and optimal offspring size.

To analyse the effects of current income on the nature of size-number trade-off and optimal offspring size, we developed a model in which offspring grow by absorbing current income and reserves. The offspring continue to grow while the current income is available or the reserves exist, and they cease to grow when the reserves are depleted and the current income ceases. We showed that the size-number trade-off is nonlinear in the region where the number of offspring is smaller than the critical number and linear in the region where the number of offspring is greater than the critical number. In the former region, the reserves are not depleted by the time the current income ceases and the offspring cease to grow when the reserves are depleted, whereas in the latter region, the reserves are depleted before the current income ceases and the offspring production is completed when the current income ceases. The optimal offspring size is the same as that shown in Sakai and Harada (Evolution 55 (2001) 467) if this optimal size is realized in the region of nonlinear trade-off, whereas the optimal offspring size is the same as that shown in Smith and Fretwell (Am. Natur. 108 (1974) 499) if this optimal size is realized in the region of linear trade-off.

Animals↗

PubMed2003

Dynamical properties of strongly interacting Markov chains.

Spatial interdependences of multiple stochastic units can be suitably quantified by the Kullback-Leibler divergence of the joint probability distribution from the corresponding factorized distribution. In the present paper, a generalized measure for stochastic interaction, which also captures temporal interdependences, is analysed within the setting of Markov chains. The dynamical properties of systems with strongly interacting stochastic units are analytically studied and illustrated by computer simulations. In particular, the emergence of determinism in such systems is demonstrated.

Computer Simulation↗

PubMed1992

A computational model of the amplitude and implicit time of the b-wave of the human ERG.

To improve the usefulness of the ERG in identifying the sites and mechanisms of adaptation, development, and disease processes, a theoretical framework based upon Granit's analysis of the ERG was evaluated. The framework assumes that the ERG is the sum of two potentials, one, P3, generated by the receptors and the other, P2, generated by the cells of the INL. Hood and Birch (1990a, b) demonstrated that the leading edge of the a-wave can be quantitatively described by a model used to describe the response from single rod receptors. This model provides P3(t), a theoretical receptor response as a function of time, for any given flash intensity. The ERGs from normal observers and patients with retinal diseases were analyzed in this framework, first by deriving P2 by computer subtracting the predicted P3(t) responses. This analysis was successful and a computational model of the ERG was then derived. The model of P2(t) was constructed with linear filters and a static nonlinearity and using P3(t) as the input. The ERG for any given flash intensity is then P3(t) + P2(t). The model describes (1) the change both in implicit times and in trough-to-peak b-wave amplitudes with flash intensity for the normal, dark-adapted observers; and (2) the changes in b-wave implicit times and amplitudes for three patients with retinal diseases. Among the implications drawn from these analyses were as follows: (1) The fits of the Naka-Rushton equation to trough-to-peak b-wave amplitudes must be interpreted with great care. (2) When the INL is affected by retinal disease, the b-wave may be a very poor reflection of INL activity. (3) The implicit time of the b-wave can provide a measure of receptor sensitivity.

Adult↗

PubMed2002

Mechanics of the human femoral adventitia including the high-pressure response.

Adventitial mechanics were studied on the basis of adventitial tube tests and associated stress analyses utilizing a thin-walled model. Inflation tests of 11 nonstenotic human femoral arteries (79.3 +/- 8.2 yr, means +/- SD) were performed during autopsy. Adventitial tubes were separated anatomically and underwent cyclic, quasistatic extension-inflation tests using physiological pressures and high pressures up to 100 kPa. Associated circumferential and axial stretches were typically <20%, indicating "adventitiosclerosis." Adventitias behaved nearly elastically for both loading domains, demonstrating high tensile strengths (>1 MPa). The anisotropic and strongly nonlinear mechanical responses were represented appropriately by two-dimensional Fung-type stored-energy functions. At physiological pressure (13.3 kPa), adventitias carry ~25% of the pressure load in situ, whereas their circumferential and axial stresses were similar to the total wall stresses (~50 kPa in both directions), supporting a "uniform stress hypothesis." At higher pressures, they became the mechanically predominant layer, carrying >50% of the pressure load. These significant load-carrying capabilities depended strongly on circumferential and axial in-vessel prestretches (mean values: 0.95 and 1.08). On the basis of these results, the mechanical role of the adventitia at physiological and hypertensive states and during balloon angioplasty was characterized.

Aged↗

PubMedDate not supplied

[The effect of attention on rotations of drawings in the Bender test].

The aim of the work was to prove the dependence of middle degree rotations of the drawings in Bender test and its form on attention level defined in digit span test (part I--repeated directly). The material consisted of 40 patients treated in Neurological Clinic of Medical University in Wrocław (24 of them had organic brain disorder, 16--had not any brain disease). In statistical analysis I used the Kruskal-Wallis non-parametric method and parametric simple regression analyses. I proved that the dependence was of curve-lined character and was expressed by the formula: ln Y = 3,26181 - 1,08144 ln X. This equation explains 9% variability in middle rotation degrees obtained in examination.

Attention↗

PubMed1993

Normal and shear stresses on a residual limb in a prosthetic socket during ambulation: comparison of finite element results with experimental measurements.

Interface stresses on a below-knee amputee residual limb during the stance phase of gait calculated using an analytical finite element model were compared with experimental interface stress measurements. The model was quasi-static and linear. Qualitatively, shapes of analytical and experimental interface stress waveforms were similar in that they were double-peaked with some distinct features apparent. However, quantitatively analytical resultant shear stress magnitudes were less than experimental values at all transducer measurement sites. Analytical normal stresses were less than experimental values at postero-proximal, postero-distal, and anteromedial proximal sites, but were greater than experimental values at antero-lateral distal and antero-lateral proximal sites. Anterior resultant shear angles were directed more distally in the model than in clinical data, an expected result since there was no relief for the tibial crest in the model. Model sensitivity analyses to shank loads showed interface normal and resultant shear stresses were most sensitive to axial force, sagittal bending moment, or sagittal shear force. The finite element model presented in this paper is significant because it contributes toward development of an analytical modeling technique to predict interface stress distributions for proposed prosthetic designs, provides insight into physical explanations of features apparent in interface stress waveforms (thereby enhancing understanding of interface mechanics), and provides insight into nonlinear characteristics that need to be added to improve the model.

Adult↗

PubMed1991

Radiation resistance of microorganisms on unsterilized infusion sets.

Three different methods were used for detecting and isolating microorganisms with high radiation resistance from the microbial contamination on infusion sets prior to sterilization. By all three methods, microorganisms with a radiation resistance high enough to be a critical factor in a sterilization process (D-6 value greater than or equal to 30 kGy) were found with a frequency of approximately two colony forming units (cfu) per 100 product items, even though the product items in two of the series of analyses were irradiated with doses of 3-6 kGy. The frequency of occurrence of isolates with D-6 values greater than or equal to 30 kGy was 0.45 per 1000 cfu of the total aerobic count. Eight different isolates of microorganisms had D-6 values greater than or equal to 40 kGy when irradiated in dried laboratory preparation. All but one of these were classified according to morphologic criteria as Deinococcus, and all but one had nonlinear dose-response relationships in semilogarithmic presentation.

Bacteria↗