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At least 1,153 records · Page 64Linked to original sources

PubMed2004

Sediment contamination, by habitat, in the Tampa Bay estuarine system (1993-1999): PAHs, pesticides and PCBs.

More than 760 Tampa Bay (Florida, U.S.A.) sediment samples have been analyzed for organic contaminants (PAHs, organochlorine pesticides, and PCBs) since 1993. Data were analyzed to assess status by habitat (defined by overlapping salinity zones and sediment type). The habitats most degraded by PAHs and pesticides were generally located in lower salinity, fine-grained sediment habitats, which are typically confined to the Hillsborough River. PCB contamination was more common in mesohaline waters of the Palm and Hillsborough rivers. Higher salinity portions of the bay, where medium to coarse sand-sized sediments predominate, showed little evidence of contamination by PAHs, PCBs and pesticides other than lindane.

Environmental Pollutants↗

PubMed2001

Microbial community dynamics and evaluation of bioremediation strategies in oil-impacted salt marsh sediment microcosms.

Microbial community dynamics in wetlands microcosms emended with commercial products (surfactant, a biological agent, and nutrients) designed to enhance bioremediation was followed for 3 months. The effectiveness of enhanced degradation was assessed by determining residual concentrations of individual petroleum hydrocarbons by GC/MS. The size and composition of the sediment microbial community was assessed using a variety of indices, including bacterial plate counts, MPNs, and DNA hybridizations with domain- and group-specific oligonucleotide probes. The addition of inorganic nutrients was the most effective treatment for the enhancement of oil degradation, resulting in marked degradation of petroleum alkanes and a lesser extent of degradation of aromatic oil constituents. The enhanced degradation was associated with increases in the amount of extractable microbial DNA and Streptomyces in the sediment, although not with increased viable counts (plate counts, MPN). Bacteria introduced with one of the proprietary products were still detected in the microcosms after 3 months, but were not a major quantitative constituent of the community. The biological product enhanced oil degradation relative to the control, but to a lesser extent than the nutrient additions alone. In contrast, application of the surfactant to the oil-impacted sediment decreased oil degradation.

Biodegradation, Environmental↗

PubMed2004

Ecological interpretation of metal contents and contaminant source characterisation of sediments from a megatidal estuary.

Sediments and the associated biota constitute an important compartment in the biogeochemical cycle of trace metals in soft substrate megatidal estuaries. The relationship between physicochemical, ecological properties, metal concentrations determined in megatidal estuary sediments from the French coast of the English Channel, the Baie des Veys and the macrobenthic organisms, are analysed, interpreted and reported. Total concentrations of zinc, cadmium, lead and copper were measured in mudflats and saltmarsh sediments using Differential Pulse Voltammetry. Sediment characteristics were obtained by measurement of particle size, water content, total organic carbon and carbonate content, using AFNOR standards. A semi-quantitative scale was used for assessing the density of the macrobenthic flora and fauna at each sampling site. Analysis of data obtained from this study showed a correlation between the concentrations of monitored trace metals and species of the macrobenthic fauna. The results of this study show that the physico-chemical characteristics of the sediments affect the retention of metals in the sediment and this in turn affects the biota.

Animals↗

PubMed2001

Bacterial and archaeal populations associated with freshwater ferromanganous micronodules and sediments.

Biology is believed to play a large role in the cycling of iron and manganese in many freshwater environments, but specific microbial groups indigenous to these systems have not been well characterized. To investigate the populations of Bacteria and Archaea associated with metal-rich sediments from Green Bay, WI, we extracted nucleic acids and analysed the phylogenetic relationships of cloned 16S rRNA genes. Because nucleic acids have not been routinely extracted from metal-rich samples, we investigated the bias inherent in DNA extraction and gene amplification from pure MnO2 using defined populations of whole cells or naked DNA. From the sediments, we screened for manganese-oxidizing bacteria using indicator media and found three isolates that were capable of manganese oxidation. In the phylogenetic analysis of bacterial 16S rRNA gene clones, we found two groups related to known metal-oxidizing genera, Leptothrix of the beta-Proteobacteria and Hyphomicrobium of the alpha-Proteobacteria, and a Fe(III)-reducing group related to the Magnetospirillum genus of the alpha-Proteobacteria. Groups related to the metal-reducing delta-Proteobacteria constituted 22% of the gene clones. In addition, gene sequences from one group of methanogens and a group of Crenarchaeota, identified in the archaeal gene clone library, were related to those found previously in Lake Michigan sediments.

Alphaproteobacteria↗

PubMed2007

Adsorption and desorption characteristics of several herbicides on sediment.

The objective of this study was to clarify the adsorption and desorption characteristics of several herbicides in sediment. Five herbicides, esprocarb, thiobencarb, dimethametryn, pretilachlor, and simetryn were examined in this study. The adsorption ratio on the sediment increased in the following order: pretilachlor < dimethametryn < simetryn < thiobencarb < esprocarb. On the other hand, the adsorption ratio on the sediment without organic matter increased in the following order: thiobencarb < esprocarb < pretilachlor < dimethametryn < simetryn. Furthermore, the amounts of simetryn, dimethametryn, and pretilachlor adsorbed on the sediment without organic matter increased, while those of esprocarb and thiobencarb decreased in comparison to the original sediment. These results strongly suggested that the mineral surface in the sediment was very important as the adsorption site for the herbicide, especially in the case of simetryn, dimethametryn, and pretilachlor. All the adsorption and desorption data fitted well with the Freundlich equation. The hysteresis in the adsorption-desorption phenomena in the sediment was observed for all the herbicides, and it was affected by the organic matter in sediment, especially in the case of dimethametryn and pretilachlor.

Absorption↗

PubMed2007

Anaerobic degradation of five polycyclic aromatic hydrocarbons from river sediment in Taiwan.

This study investigated the anaerobic degradation of five polycyclic aromatic hydrocarbons (PAHs) from Erren River sediment in southern Taiwan. The degradation rates of PAH were in the order: acenaphthene > fluorene > phenanthrene > anthracene > pyrene. The degradation rate was enhanced when the five compounds were present simultaneously in river sediment. Comparison of the PAH degradation rates under three reducing conditions showed the following order: sulfate-reducing conditions > methanogenic conditions > nitrate-reducing conditions. The addition of electron donors (acetate, lactate and pyruvate) enhanced PAH degradation under methanogenic and sulfate-reducing conditions. However, the addition of acetate, lactate or pyruvate inhibited PAH degradation under nitrate-reducing conditions. The addition of heavy metals, nonylphenol and phthalate esters (PAEs) inhibited PAH degradation. Our results show that sulfate-reducing bacteria, methanogen and eubacteria are involved in the degradation of PAH; sulfate-reducing bacteria constitute a major microbial component in PAH degradation. Of the microorganism strains isolated from the sediment samples, we found that strain ER9 expressed the greatest biodegrading ability.

Anaerobiosis↗

PubMed2004

Relationship of sediment redox conditions to methyl mercury in surface sediment of Louisiana Lakes.

Surface sediment from three Louisiana Lakes containing overlying water layer spiked with 2 microg/g (2 ppm) mercury were incubated under oxygenated (air) and nonoxygenated (N2) conditions for determining the impact of oxygen status of overlying water on methylation of Hg in surface sediment from these lakes. The added mercury resulted in a greater than ten fold increase in methyl mercury (MeHg) as compared to native concentration of MeHg. The increase in methyl Hg production was less in sediment in which overlying water was exposed to oxygen rather than nitrogen. Results suggest that methyl Hg production would be less in lakes containing an oxygenated water column. In parallel microcosm studies without added mercury. MeHg decreased in sediment when redox potential of sediment suspension was increased from -200mV to +50mV. Results of these studies demonstrate the importance of oxygenation or redox condition of surface sediment on mercury methylation and demethylation. Sediment conditions, which either reduce methylation or enhance demethylation in surface sediment, will limit the bioavailability of MeHg to the aquatic environment.

Environmental Monitoring↗

PubMed2006

A comparison of quartz OSL and isothermal TL measurements on Chinese loess.

The reliability of equivalent doses (De) from Chinese loess, measured using isothermal thermoluminescence (ITL) is tested. Dose calculations use the single-aliquot regenerative-dose (SAR) procedure. Despite good reproducibility of laboratory-induced signals and negligible response at zero dose, a significant overestimation of De is observed, compared with OSL measurements. Measurement of a known laboratory dose administered after optical bleaching, but before any heating, demonstrates that the first heating during measurement of the natural signal causes a significant sensitivity change, undetected by SAR. Using the single-aliquot regeneration and added (SARA) dose procedure, which allows for initial sensitivity change, good agreement with OSL is obtained after allowance is made for initial incomplete bleaching. It is concluded that SAR-ITL, in its present form, is not a suitable method for dating Chinese loess; it is very important to undertake a dose recovery test before any TL procedure is used to date sediments.

China↗

PubMed2000

Pacific Northwest marine sediments contain ammonia-oxidizing bacteria in the beta subdivision of the Proteobacteria.

The diversity of ammonia-oxidizing bacteria in aquatic sediments was studied by retrieving ammonia monooxygenase and methane monooxygenase gene sequences. Methanotrophs dominated freshwater sediments, while beta-proteobacterial ammonia oxidizers dominated marine sediments. These results suggest that gamma-proteobacteria such as Nitrosococcus oceani are minor members of marine sediment ammonia-oxidizing communities.

Ammonia↗

PubMed2004

Organic matter composition in the sediment of three Brazilian coastal lagoons: district of Macaé, Rio de Janeiro (Brazil).

Freshwater lagoons comprise important coastal ecosystems and natural buffers between urbanized land areas and open ocean in the Rio de Janeiro State, Brazil. Studies of sediment and water chemistry, zooplankton and bacterial communities to assess the extent of anthropogenic disturbance are available. Here we contribute with an organic-geochemical approach supplemented by some microbiological aspects to complete the characterization of these lagoonal ecosystems. Bulk organic matter and extractable lipids (aliphatic hydrocarbons, alcohols and fatty acids, sterols) were investigated from two locations per lagoon: at the seaward site and landward ends - and at two depth intervals (0-3 and 3-6 cm) per site. Urbanized Imboacica Lagoon received increased anthropogenic input over the most recent years represented by the topmost 3 cm of sediment, whereas deeper sediment layers are less affected by human influence. Eutrophication or nutrient availability favored enhanced algal/cyanobacterial growth. In remote Cabiúnas and Comprida Lagoons pristine conditions are preserved. Organic matter from vascular plants dominates (chain length of free lipids up to C36), which is exceptionally well preserved by acidic lagoonal waters. Differentiation between landward and seaward sites in these two lagoons is less well established due to much smaller surface/volume to catchment ratios. No anthropogenic influences are yet detectable in sediments of Cabiúnas and Comprida Lagoons.

Biomass↗

PubMed2003

Uptake, depuration, and toxicity of dissolved and sediment-bound fluoranthene in the polychaete, Capitella sp. I.

Deposit-feeders may be important in facilitating the removal of organic contaminants from bulk sediment. The relationship between uptake route (water vs sediment), depuration and toxicity was investigated in the deposit-feeding polychaete Capitella species I. Individual worms were exposed either to dissolved (i.e., < 0.45 micron) fluoranthene (FLU) (water-only treatment [WO]), or both to dissolved and sediment-bound FLU (porewater and sediment [PWS] treatment). The porewater concentration of dissolved FLU in PWS was set approximately equal to the dissolved concentration in WO (0, 50 micrograms FLU l-1). Fluoranthene marginally affected growth in WO worms (6 d exposure) but not in PWS worms (5 d exposure). The final body-burdens in PWS and WO worms were 141.2 and 99.5 micrograms total FLU equivalents (g dry wt worm)-1, respectively. Sediment-bound FLU was calculated to contribute at least 30% and up to as much as 91% of the total amount taken up by PWS worms. Water-only treatment worms retained all of the FLU during the subsequent depuration (4 d), whereas PWS worms decreased both the weight-specific (t1/2 = 0.95 d) and the total-body burden (t1/2 = 7.8 d), suggesting both active excretion and dilution of FLU body burden as a result of growth. Thus, our results indicate that the sediment-associated pool is an important route of uptake in Capitella sp. I, and that such deposit feeders may be important for remobilization of sediment-associated contaminants, such as fluoranthene.

Animals↗

PubMed2004

Toxicokinetics of sediment-associated polybrominated diphenylethers (flame retardants) in benthic invertebrates (Lumbriculus variegatus, Oligochaeta).

Polybrominated diphenylethers (PBDEs) are ubiquitous environmental contaminants showing rapid temporal increase in some sample types. The compounds are known to biomagnify in aquatic food webs and are assumed to archive into sediments and soils. Currently, no direct evidence indicates whether sediment-associated PBDEs are available for biota. The aim of the present study was to explore the uptake and elimination of two common congeners (47 and 99) in sediment-inhabiting invertebrates to shed light on possible bioavailability of sediment-associated PBDEs. Two clean lake sediments were spiked with environmentally relevant concentrations of 14C-labeled tetra- and pentabromo diphenylether, and oligochaetes (Lumbriculus variegatus) were exposed for three or four weeks to allow kinetic accumulation calculations. Subsequent depuration tests were performed after three weeks of exposure to obtain depuration rates. Both congeners were clearly bioavailable, and only slight differences in steady-state tissue concentrations were found between the four sediment-ingesting oligochaete treatments (biota sediment accumulation factors [BSAFs], 3.0-3.7). The tetrabromo diphenylether-exposed oligochaetes that did not ingest sediment had clearly lower influx rates (0.1 vs 1-3 nmol h(-1)) than sediment-ingesting worms. Also, the estimated BSAF (1.8) was statistically different from that of the sediment-ingesting oligochaetes. These findings support the significance of feeding behavior in bioaccumulation of very hydrophobic organic contaminants. Depuration of both congeners was biphasic, indicating two kinetically different compartments in L. variegatus. Compartment A made up 73 to 92% of total radioactivity in tissues and had relatively fast depuration rates (half-lives, 10.5-47.5 h); the smaller compartment B had very slow depuration rates. No significant biotransformation of PBDEs was evident. The present study clearly demonstrates that the sediment-associated PBDEs, like other hydrophobic organic contaminants of environmental concern, are not totally sequestered from sediment-inhabiting oligochaetes and are subject to trophic transfer.

Animals↗

PubMed2005

Desorption kinetics of fluoranthene and trifluralin from Lake Huron and Lake Erie, USA, sediments.

Desorption kinetics were determined for fluoranthene (FLU) and trifluralin (TF) spiked onto Lake Erie and Lake Huron, USA, sediments at three concentrations (10, 40, 100 mg/kg dry wt). Following four months of equilibration, desorption was measured by extraction with Tenax and the data were fit to a first-order three-compartment kinetic model. The rate constants of the rapidly (k(rap)), slowly (k(slow)), and very slowly (k(vs)) desorbing fractions were on the order of 10(-1)/h, 10(-2-3)/h, and 10(-4)/h, respectively. The t99.9 (time required for 99.9% of the FLU and TF to desorb from each pool value) for each compartment indicated that FLU and TF desorption from rapid, slow, and very slow compartments were on the order of hours, days, and years, respectively. Higher rates of desorption were observed for FLU and TF from the Lake Huron sediments and this was not apparently related to the total organic carbon (TOC), particle size distribution, or polarity (carbon-to-nitrogen ratio) of the sediments. In general, the total fraction of the initial contaminant amounts that desorbed over the time course was directly related to concentration, which we hypothesized was due to the combined effects of saturation of high-energy (slow and very slow) binding sites in the organic carbon matrix and hysteresis. In extrapolations to field conditions, FLU and TF were predicted to persist in the sediments for years due to the very slow desorption of an estimated 31 to 53% of the bulk concentrations. Based on the rapidly desorbing fractions, the bioavailable amounts of the contaminants were predicted to be between 31 to 55% of bulk sediment concentrations.

Adsorption↗

PubMed2006

A novel contact assay for testing genotoxicity of chemicals and whole sediments in zebrafish embryos.

Broad consensus exists that whole-sediment exposure protocols represent the most realistic scenario to simulate in situ exposure conditions. So far, however, several endpoints including genotoxicity in vertebrate-based systems could be tested only after transfer of particle-bound substances into the aqueous phase. The present study was carried out to develop a protocol for generating a suspension of single cells from sediment-exposed zebrafish embryos that is suitable for detecting particle-bound genotoxicity in the alkaline single cell gel electrophoresis (comet assay). In this solid-phase genotoxicity assay, a whole-body cell suspension derived from zebrafish embryos exposed to native (whole) sediments is assayed in the comet assay. Several chemical and mechanical isolation procedures were compared to optimize cell yield and minimize DNA damage by the method itself. If compared to collagenase isolation, mechanical cell dissociation gave less DNA damage; trypsinization resulted in similarly low DNA damage but significantly lower cell yield. In order to test the optimized protocol, effects of well-known genotoxicants (4-nitroquinoline-N-oxide, nitrofurantoin, hydrogen peroxide, benzo[a]pyrene) and of two sediments from the upper Rhine River (Germany) on zebrafish embryos were investigated. Results documented clear-cut genotoxicity for all four substances and for one of the two whole-sediment samples. An ultraviolet (UV) light exposure of whole embryos and primary cultures from embryos elucidated only minor effects for the whole embryos compared to the primary cells. Consequently, UV irradiation cannot be suggested as a positive control in intact zebrafish embryos. In conclusion, the newly developed sediment contact assay can be recommended for the detection of both single substances but also the bioavailable fraction of the total hazard potential of sediments.

Animals↗

PubMed2006

Desorption resistance of polycyclic aromatic hydrocarbons and duration of exposure.

The desorption-resistant fraction of laboratory-spiked phenanthrene in two Louisiana (USA) sediments was not observed to be significantly different, but the two sediments exhibited different condensed-phase organic carbon contents, as defined operationally by the organic carbon remaining after combustion of the sediment at 375 degrees C. Only 3% of the original saturated phenanthrene in the sediments was not readily removed by exposure to a nonpolar polymeric resin and sorbent XAD-2. Allowing the laboratory-spiked contaminants to age for periods of up to three years yielded little difference in the desorption-resistant characteristics of the sediments. Field-contaminated sediments from Utica Harbor (Utica, NY, U.S.A.) and Rouge River (Detroit, MI, USA) that had a lengthy (decades to a century) period of contamination, however, exhibited significantly different desorption-resistant contaminant fractions, consistent with the fractions of condensed-phase organic carbon in the sediments. Measurements of the fraction that could be rapidly desorbed using the XAD-2 sorbent also accounted for essentially all desorption to pore water and, thus, provided a good prediction of effective bulk partition coefficients. It was concluded that the condensed-phase organic carbon was a good indicator of the potential for desorption resistance in field-contaminated sediments and that the rapidly desorbing fraction provided a quantitative indicator of its significance.

Adsorption↗

PubMed2006

Sediment and phosphorus transport in irrigation furrows.

Sediment and phosphorus (P) in agricultural runoff can impair water quality in streams, lakes, and rivers. We studied the factors affecting P transfer and transport in irrigated furrows in six freshly tilled fallow fields, 110 to 180 m long with 0.007 to 0.012 m m-1 slopes without the interference of raindrops or sheet flow that occur during natural or simulated rain. The soil on all fields was Portneuf silt loam (coarse-silty, mixed, superactive, mesic Durinodic Xeric Haplocalcids). Flow rate, sediment concentration, and P concentrations were monitored at four, equally spaced locations in each furrow. Flow rate decreased with distance down the furrow as water infiltrated. Sediment concentration varied with distance and time with no set pattern. Total P concentrations related directly to sediment concentrations (r2=0.75) because typically >90% of the transported P was particulate P, emphasizing the need to control erosion to reduce P loss. Dissolved reactive phosphorus (DRP) concentrations decreased with time at a specific furrow site but increased with distance down the furrow as contact time with soil and suspended sediment increased. The DRP concentration correlated better with sediment concentration than extractable furrow soil P concentration. However, suspended sediment concentration tended to not affect DRP concentration later in the irrigation (>2 h). These results indicate that the effects of soil P can be overshadowed by differences in flow hydraulics, suspended sediment loads, and non-equilibrium conditions.

Agriculture↗

PubMed1996

Pathways of carbon oxidation in continental margin sediments off central Chile.

Rates and oxidative pathways of organic carbon mineralization were determined in sediments at six stations on the shelf and slope off Concepcion Bay at 36.5 degrees S. The depth distribution of C oxidation rates was determined to 10 cm from accumulation of dissolved inorganic C in 1-5-d incubations. Pathways of C oxidation were inferred from the depth distributions of the potential oxidants (O2, NO3-, and oxides of Mn and Fe) and from directly determined rates of SO4(2-) reduction. The study area is characterized by intense seasonal upwelling, and during sampling in late summer the bottom water over the shelf was rich in NO3- and depleted of O2. Sediments at the four shelf stations were covered by mats of filamentous bacteria of the genera Thioploca and Beggiatoa. Carbon oxidation rates at these sites were extremely high near the sediment surface (>3 micromol cm-3 d-1) and decreased exponentially with depth. The process was entirely coupled to SO4(2-) reduction. At the two slope stations where bottom-water O2 was > 100 microM, C oxidation rates were 10-fold lower and varied less with depth; C oxidation coupled to the reduction of O2, NO3-, and Mn oxides combined to yield an estimated 15% of the total C oxidation between 0 and 10 cm. Carbon oxidation through Fe reduction contributed a further 12-29% of the depth-integrated rate, while the remainder of C oxidation was through SO4(2-) reduction. The depth distribution of Fe reduction agreed well with the distribution of poorly crystalline Fe oxides, and as this pool decreased with depth, the importance of SO4(2-) reduction increased. The results point to a general importance of Fe reduction in C oxidation in continental margin sediments. At the shelf stations, Fe reduction was mainly coupled to oxidation of reduced S. These sediments were generally H2S-free despite high SO4(2-) reduction rates, and precipitation of Fe sulfides dominated H2S scavenging during the incubations. A large NO3- pool was associated with the Thioploca, and the shelf sediments were thus enriched in NO3- relative to the bottom water, with maximum concentrations of 3 micromol cm-3. The NO3- was consumed during our sediment incubations, but no effects on either C or S cycles could be discerned.

Bacteria↗

PubMedDate not supplied

Nuclear magnetic resonance imaging (MRI) of diesel oil migration in estuarine sediment samples.

Magnetic resonance imaging (MRI) provides a means of monitoring the change in position and the eventual breakdown of oil within sediments. The multidimensional technique allows the position of nuclei (most commonly protons) to be located within a known volume of substrate, e.g. sediment, hence offering a method of assessing the harming potential of oils in near-shore environments. Two-dimensional (2D) and three-dimensional (3D) MRI analyses of the measurement and movement of oil in estuarine sediments show that, using appropriate parameters, movement of the oil can be both observed and quantified. To aid the quantification a sample holder fabricated from polyvinylsiloxane, an inert material visible in magnetic resonance images has been used as an internal intensity standard. The results show the great potential of MRI in studying protonated contaminants in these materials, notwithstanding the presence of paramagnetic species in estuarine sediments which might distort the image. Sediments studied thus far have been collected from the Tay Estuary, Northeast Scotland.

Fresh Water↗