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The early development and evolution of the human brain.

THE CHEMISTRY OF THE BRAIN: The brain and nervous system is characterised by a heavy investment in lipid chemistry which accounts for up to 60% of its structural material. In the different mammalian species so far studied, only the 20 and 22 carbon chain length polyenoic fatty acids were present and the balance of the n-3 to n-6 fatty acids was consistently 1:1. The difference observed between species, was not in the chemistry but in the extent to which the brain is developed. This paper discusses the possibility that essential fatty acids may have played a part in it evolution. THE ORIGIN OF AIR BREATHING ANIMALS: The first phase of the planet's existence indulged in high temperature reactions in which oxygen combined with everything feasible: from silicon to make rocks to hydrogen to make water. Once the planet's temperature dropped to a point at which water could condense on the surface allowing chemical reactions to take place in it. The atmosphere was at that time devoid of oxygen so life evolved in a reducing atmosphere. Oxygen was liberated by photolysis of water and as a by-product of the blue-green algae through photosynthesis. When the point was reached at which oxidative metabolism became thermodynamically possible, animal life evolved with all the principle phyla establishing themselves within a relatively short space of geological time. (Bernal 1973). DHA and nerve cell membranes DHA AND NERVE CELL MEMBRANES: From the chemistry of contemporary algae it is likely that animal life evolved in an n-3 rich environment although not exclusively so as smaller amounts of n-6 fatty acids would have been present. A key feature of the first animals was the evolution of the photoreceptor: in examples of marine, amphibian and modern mammalian species, it has been found to use docosahexaenoic acid (DHA) as the principle membrane fatty acid in the phosphoglycerides. It is likely that the first animals did so as well. Coincidentally, the synaptic membranes involved in signal transduction also use high proportions of n-3 fatty acids. However, the n-6 fatty acids also find a place, in the inositol phosphoglyceride (IPG) which appears to be involved with calcium ion transport and hence signal activation and reception. Even in the photoreceptor, the IPG is an arachidonic acid rich phosphoglyceride. THE EVOLUTION OF MAMMALS AND THE LARGE BRAIN: The dominance of n-3 fatty acids in the food chain, persisted until the end of the Cretaceous period when the flowering plants followed on the disappearance of the giant cycads and ferns. A new set of species, the mammals, then evolved with a requirement for n-6 fatty acids for reproduction. This dependance was coincident with the flowering plants which for the first time produced protected seeds: these introduced a rich source of n-6 fatty acids. The brain size of the mammals tended to be relatively larger (that is in relation to body size) by comparison with the previous reptilian or egg laying systems. This process led to the large human brain. A crucial difference between man and other animals, is undoubtedly the extent to which the brain and its peripheral attributes have been developed. This paper will address the possibility that the potential for the evolution of the large human brain may have been released by the evolving human primate occupying an ecological niche which offered a rich source of those nutrients specifically required for the brain. That niche is at the land/water interface.

Animals↗

Evolution. A case of system dynamics.

It is contended that the Darwinian theory of evolution is merely a special case of the obsolete Newtonian paradigm. A modern vision of reality, consistent with structuralism in biology, is presented. Some well-known neo-Darwinist explanations of the evolutionary process are quoted accompanied by structuralist interpretations of the same cases. These lead to a different 'mechanism' of evolution, based on internal factors, consistent with contemporary science. It is argued that a great number of specialists who dismiss the Darwinian theory of evolution share a common reason for rejecting it, but differ widely in guessing the motivating factor or factors of evolution.

Animals↗

Concerted evolution of ruminant stomach lysozymes. Characterization of lysozyme cDNA clones from sheep and deer.

Contradictory evolutionary histories of ruminant lysozymes have been predicted by analysis of genomic blots (Irwin, D.M., Sidow, A., White, R., and Wilson, A.C. (1989) in The Immune Response to Structurally Defined Proteins: The Lysozyme Model (Smith-Gill, S.J., and Sercarz, E.E., eds) pp. 73-85, Adenine Press, Guilderland, NY) and sequences of cow stomach lysozyme cDNAs (Irwin, D.M., and Wilson, A.C. (1989) J. Biol. Chem. 264, 11387-11393). Genomic blots indicate that the amplification of the lysozyme gene family occurred 40-50 million years ago, while the cDNA sequences imply that the stomach genes began diverging from one another after the splitting of the deer and cow lineages, 25 million years ago. To resolve this contradiction, we characterized 111 stomach lysozyme cDNAs from two additional ruminant species: domestic sheep and axis deer. The cDNA sequences of the coding region of mature lysozyme together with the 3'-untranslated region were obtained from abomasum (true stomach) mRNA with the use of the polymerase chain reaction. The two primers for amplifying the cDNA were a lysozyme-specific primer, encoding a conserved sequence at the amino terminus of mature stomach lysozyme, and oligo(dT) as a general mRNA primer. Comparison of the cDNA sequences from these species to one another and to those of the cow revealed that different parts of the ruminant stomach lysozyme genes have had different evolutionary histories. The 3'-untranslated region has evolved in a divergent fashion since the original duplications 40-50 million years ago, supporting the genomic blot interpretation; by contrast, the coding region has evolved in a concerted fashion, that is, the multiple sequences within a species have evolved in unison. The 3'-untranslated portion of the lysozyme genes appears to have escaped from concerted evolution due to inability to initiate concerted evolution, rather than due to reduced sequence similarity. The process of concerted evolution in stomach lysozymes may have had roles both in adapting lysozyme to the stomach environment in early ruminants as well as in retarding amino acid sequence evolution in the well adapted lysozyme of modern ruminants.

Animals↗

[Functional evolution: origin and problems].

In the article the history of comparative and evolutionary physiology since the early XIX is given. The most substantial methods of evolutionary physiology are described. In the mid-50ies Orbely put forward the suggestion concerning two tasks facing evolutionary physiology, namely the study of evolution of functions and functional evolution. In the present work attention is given to the principles underlying evolution of functions on different levels of physiological systems. The main aspects of functional evolution are discussed.

Animals↗

[Role of chromosomes in evolution: a new interpretation].

The number of possible meiotic segregations of paternal and maternal chromosomes is 2N (N = haploid chromosome number). In eutherian Mammals, where large variations of N exist, 2N may be very different in related species, genes, or families. For instance, in Cercopithecidae, species with the highest value (N = 36) make 2(15) = 32,768 more gametic chromosome combinations than those with the lowest value (N = 21). It is also shown that the number of chiasmata varies from species to species and is proportional to the haploid number of arms NF/2 of the karyotype. Thus, increase or decrease of both N and NF/2, often concomitant, both increase or decrease genetic mixing. The chromosomal phylogeny of Primates, Carnivora and Rodentia shows that pure dichotomic evolution is rare, at contrast with populational (non dichotomic) evolution which seems most frequent. In these Mammals, the few examples of dichotomic evolution are observed in groups with low values of N and NF/2. It is concluded that dichotomic evolution, which should be favoured by the transmission of groups of linked mutant alleles, is prevented, in most instances, by the high recombination rate in karyotypes with high values of N and NF/2. Thus the mode of speciation would depend on karyotype modifications by long term effects on population genetics, in addition to the immediate effects of gametic barriers due to chromosomal rearrangements in the heterozygous state.

Alleles↗

[Evaluation of the evolution rate in Eigen's and Kuhn's models].

The stage evolution of a "population" consisting of informational sequences having fixed length N is investigated. It is assumed that at each stage sequences of a "population" are selected, reproduced, mutated and diluted. Character of an evolution is revealed and the evolution rate is estimated for different values of N, "population" size n, and a number of different symbols lambda in sequences. According to the obtained estimations it is possible to find sequences in an evolution process which are close to the "optimum" one using far less number of sequences (approximately lambda N4) than for a random search (approximately lambda N).

Animals↗

Relationships between specialized cells, capillaries and intermediary cytofibrillary elements. XVIIth Note. Biological evolution of the respiratory subsystem in Reptilia.

This note continues the XIIth, XVth and XVIth ones concerning the biological evolution of the respiratory subsystem (SS.Rs.) in invertebrates, aquatic vertebrates and amphibians. Author tries to discern some of the factors involved in the passage from Amphibia to Reptilia. The lengthy evolution of embryotrophic mechanisms during this process in the light of the aromorphotic theory (A. N. Sewertsow) and the accelerating form of dyschronism (De Beer) are highlighted. The result of these changes is the formation of a large telolecithal egg endowed with all the embryotrophic reserves needed for the terrestrial evolution, for its acceleration and condensation, through the suppression of the larval stage and of metamorphosis, as well as through the appearance of some new characters. The evolution of the extraembryonic area in Amniota precursors and in Amniota and their homeothermal descendants, both oviparous and viviparous, is also discussed. The succession of respiratory organs is followed up (yolk sac, external branchiae, allantois, placenta) in the light of the organ substitution theory and of the biological stereo-type theory (Mârza, Repciuc, Eskenasy).

Animals↗

[Evolution of cartilage in the skeletons of ancient anamniotes].

Owing to discoveries of ancient fossils of the Anamnia it was revealed that endo and exoskeletal tissue have an independent history of development. At early evolutional stages, the exoskeletal tissues were connected by various transitions and were at the stage of incomplete differentiation. During evolution variability of these tissues decreased; this resulted in disappearance of aspidin from the tegmentum, and dentin remained only in some primitive groups of fishes (sharks, Latimeria chalumnae, Lepidosteus osseus), while in most vertebrates the exoskeleton was formed exclusively from the osseous tissue. In the endoskeleton the cartilage evolutionally preceded the bone. It is rather difficult to draw any border between the calcified cartilage and the bone in the ancient vertebrates. When an osseous tissue healing occurs at some pathological processes in the vertebrae, a primitive state of the endoskeletal tissue is reproduced. Secondary progressive cartilage development during evolution in the anamnia is considered as a result of negative anabolism and connected with a slowed morphogenesis. Chondrification evidently increases plastic possibilities of the endoskeletal structures.

Animals↗

[The thermodynamic direction of biological evolution. The model and the reality].

A macrothermodynamic model of evolution of the supramolecular structures and chemical composition of living objects during ontogenesis and at long-term stages of general biological evolution is presented. A study of quasiclosed (thermodynamically and kinetically) systems, phases of the biomass supramolecular structures, enables a conclusion on the thermodynamic direction of biological evolution to be made. In correspondence with the second principle, this direction leads to variations in the chemical composition and structure of the living systems during their development. Indirect and direct evidence of the trend to a minimal Gibbs specific function of formation of the supramolecular structures in animal tissues during ontogenesis are presented. The conclusion that thermodynamics is the "driving force" of evolution of the biological world is confirmed.

Animals↗

LTR retrotransposons and the evolution of eukaryotic enhancers.

Since LTR retrotransposons and retroviruses are especially prone to regional duplications and recombination events, these viral-like systems may be especially conducive to the evolution of closely spaced combinatorial regulatory motifs. Using the Drosophila copia LTR retrotransposon as a model, we show that a regulatory region contained within the element's untranslated leader region (ULR) consists of multiple copies of an 8 bp motif (TTGTGAAA) with similarity to the core sequence of the SV40 enhancer. Naturally occurring variation in the number of these motifs is correlated with the enhancer strength of the ULR. Our results indicate that inter-element selection may favor the evolution of more active enhancers within permissive genetic backgrounds. We propose that LTR retroelements and perhaps other retrotransposons constitute drive mechanisms for the evolution of eukaryotic enhancers which can be subsequently distributed throughout host genomes to play a role in regulatory evolution.

Animals↗

Ether lipids and platelet-activating factor: evolution and cellular function.

This review considers the relation between the evolution of ether lipids and platelet-activating factor (PAF) in living organisms for the first time. Ether lipids are shown to be the main structural lipid components in the cells of the most primitive organisms on the Earth; during evolution they were gradually substituted for lipids with ester and vinyl bonds. Synthesis of PAF has been found in some bacteria, protozoans, yeasts, plants, marine invertebrates, lower vertebrates, and mammals. The regulatory role of PAF is suggested to already appear in protozoans and later be maintained during the subsequent evolution of living organisms. During evolution, functions of PAF in the cell have been changing and enlarging, while ether lipids have been gradually losing their role as the main structural lipid component of the cells of living organisms.

Animals↗

Innateness, evolution, and genetics of language.

Our goal in this article is to review a debate over the evolution of language and to suggest some keys to its resolution. We begin with a review of some of the theoretical and empirical evidence for the innateness of language that has caused renewed interest in the evolution of language. In a second section we review some prominent theories of the evolution of language, focusing on the controversy over whether language could have been adapted for some purpose. We argue that for evolutionary studies of language to advance, theorists must make more persuasive arguments for the purpose of language, and, furthermore, linguists must continue to develop a detailed theory of syntax. Finally, we suggest ways that behavioral and population genetics could help to inform studies of the evolution of language.

Biological Evolution↗

Functional Characterization of Luciferase in a Brittle Star Indicates Parallel Evolution Influenced by Genomic Availability of Haloalkane Dehalogenase.

Determining why convergent traits use distinct versus shared genetic components is crucial for understanding how evolutionary processes generate and sustain biodiversity. However, the factors dictating the genetic underpinnings of convergent traits remain incompletely understood. Here, we use heterologous protein expression, biochemical assays, and phylogenetic analyses to confirm the origin of a luciferase gene from haloalkane dehalogenases in the brittle star Amphiura filiformis. Through database searches and gene tree analyses, we also show a complex pattern of the presence and absence of haloalkane dehalogenases across organismal genomes. These results first confirm parallel evolution across a vast phylogenetic distance, because octocorals like Renilla also use luciferase derived from haloalkane dehalogenases. This parallel evolution is surprising, even though previously hypothesized, because many organisms that also use coelenterazine as the bioluminescence substrate evolved completely distinct luciferases. The inability to detect haloalkane dehalogenases in the genomes of several bioluminescent groups suggests that the distribution of this gene family influences its recruitment as a luciferase. Together, our findings highlight how biochemical function and genomic availability help determine whether distinct or shared genetic components are used during the convergent evolution of traits like bioluminescence.

Echinodermata↗

A General Principle of Neuronal Evolution Reveals a Human-Accelerated Neuron Type Potentially Underlying the High Prevalence of Autism in Humans.

The remarkable ability of a single genome sequence to encode a diverse collection of distinct cell types, including the thousands of cell types found in the mammalian brain, is a key characteristic of multicellular life. While it has been observed that some cell types are far more evolutionarily conserved than others, the factors driving these differences in the evolutionary rate remain unknown. Here, we hypothesized that highly abundant neuronal cell types may be under greater selective constraint than rarer neuronal types, leading to variation in their rates of evolution. To test this, we leveraged recently published cross-species single-nucleus RNA-sequencing datasets from three distinct regions of the mammalian neocortex. We found a strikingly consistent relationship where more abundant neuronal subtypes show greater gene expression conservation between species, which replicated across three independent datasets covering >106 neurons from six species. Based on this principle, we discovered that the most abundant type of neocortical neurons-layer 2/3 intratelencephalic excitatory neurons-has evolved exceptionally quickly in the human lineage compared to other apes. Surprisingly, this accelerated evolution was accompanied by the dramatic down-regulation of autism-associated genes, which was likely driven by polygenic positive selection specific to the human lineage. In summary, we introduce a general principle governing neuronal evolution and suggest that the exceptionally high prevalence of autism in humans may be a direct result of natural selection for lower expression of a suite of genes that conferred a fitness benefit to our ancestors while also rendering an abundant class of neurons more sensitive to perturbation.

Humans↗

Long-term evolution of astigmatism following planned extracapsular cataract extraction.

Sixty-six eyes of 66 patients undergoing planned extracapsular cataract extraction with interrupted 10-0 nylon suture wound closure were followed up prospectively for three years following surgery to evaluate the long-term evolution of postoperative astigmatism. The study examined the period beginning three months postoperatively, well after all suture cutting was completed, a point often considered to represent "final postoperative astigmatism." For the group as a whole, the induced astigmatism measured at three months was not stable, but gradually shifted 0.69 diopter toward against-the-rule astigmatism. Three specific patterns of evolution of postoperative astigmatism were identified, depending on the amount of induced astigmatism found at three months. The data revealed that it was not possible to consistently induce with-the-rule astigmatism, although permanent against-the-rule induced astigmatism could be produced. The long-term evolution of postoperative cataract wounds toward more against-the-rule astigmatism seen in this study was not affected by the number of intact nylon sutures. Proper evaluation of any technique to modify postoperative astigmatism must consider the long-term evolution of the cataract wound.

Aged↗

Nonrandom evolution of end-stage osteoarthritis of the lower limbs.

OBJECTIVE: Patients with unilateral hip or knee replacements for end-stage osteoarthritis (OA) are at high risk for future progression of OA in other joints of the lower extremities, often requiring additional joint replacements. Although the risks of future surgery in the contralateral cognate joints (i.e., contralateral hip replacement after an initial hip replacement) have been evaluated, the evolution of end-stage hip OA to OA involving the knee joints, and vice versa (i.e., noncognate progression) has not been investigated. Because characterization of OA progression in noncognate joints may shed light on the pathogenesis of multijoint OA, we investigated the pattern of evolution of end-stage lower extremity OA in a large, clinical cohort. METHODS: Total joint replacement (TJR) was selected as a marker of end-stage OA, and a database comprising all lower extremity TJRs performed at a large referral center between 1981 and 2001 was accessed. Of the 5,894 patients identified, 486 patients with idiopathic OA who underwent hip replacement and 414 who underwent initial knee replacement were analyzed to determine the relative likelihood of subsequent TJRs. Patients with the systemic inflammatory arthropathy, rheumatoid arthritis (RA), were evaluated as a control population because RA progression is not considered to be a primarily mechanically mediated process. RESULTS: The contralateral cognate joint was the most common second joint to undergo replacement in both the OA and the RA groups. However, in OA patients for whom the second TJR was in a noncognate joint, that joint was >2-fold more likely to be on the contralateral limb than on the ipsilateral limb (hip to knee P < 0.001; knee to hip P = 0.013). In contrast, among the RA cohort, the evolution was random and no laterality for noncognate TJR was observed at either the hip or the knee (P = 0.782). CONCLUSION: This characterization of end-stage lower extremity OA demonstrates that the disease evolves nonrandomly; after 1 joint is replaced, the contralateral limb is significantly more likely to show progression of OA than is the ipsilateral limb. Thus, OA in 1 weight-bearing joint appears to influence the evolution of OA in other joints. The absence of such laterality in RA suggests that OA progression may be mediated by extrinsic factors such as altered joint loading.

Arthroplasty, Replacement, Hip↗

An inhibitor of cyclin-dependent kinase, stress-induced p21Waf-1/Cip-1, mediates hepatocyte mito-inhibition during the evolution of cirrhosis.

During the evolution of cirrhosis, there is a relative decrease in volume percentage of hepatocytes and a relative increase in biliary epithelial cells and myofibroblasts. This is recognized histopathologically as a ductular reaction and leads to gradual distortion of the normal hepatic architecture. The final or decompensated stage of cirrhosis is characterized by a further decline in hepatocyte proliferation and loss of functional liver mass that manifests clinically as ascites, encephalopathy, and other signs of liver failure. In this report, we tested the hypothesis that p21-mediated hepatocyte mito-inhibition accelerates the evolution of cirrhosis using an established mouse model of decompensated biliary cirrhosis, p21-deficient mice, and liver tissue from humans awaiting liver replacement. Despite the same insult of long-term (12-week) bile duct ligation, mice prone to decompensation showed significantly more oxidative stress and hepatocyte nuclear p21 expression, which resulted in less hepatocyte proliferation, an exaggerated ductular reaction, and more advanced disease compared with compensation-prone controls. Mice deficient in p21 were better able than wild-type controls to compensate for long-term bile duct ligation because of significantly greater hepatocyte proliferation, which led to a larger liver mass and less architectural distortion. Mito-inhibitory hepatocyte nuclear p21 expression in humans awaiting liver replacement directly correlated with pathological disease stage and model of end-stage liver disease scoring. In conclusion, stress-induced upregulation of hepatocyte p21 inhibits hepatocyte proliferation during the evolution of cirrhosis. These findings have implications for understanding the evolution of cirrhosis and associated carcinogenesis. Supplementary material for this article can be found on the HEPATOLOGY website (http://interscience.wiley.com/jpages/0270-9139/suppmat/index.html).

Adaptation, Physiological↗

Evolution of hepatitis C virus quasispecies immediately following liver transplantation.

Liver cirrhosis caused by chronic hepatitis C virus (HCV) infection is the main indication for liver transplantation (LT). There is little information on HCV genetic evolution following transplantation. The aim of this study was to carefully assess early evolution of HCV quasispecies in a cohort of 18 liver transplant recipients followed prospectively. Quasispecies analysis was performed by sequence analysis of the hypervariable region 1 (HVR1) before transplantation and at day 4 and week 4 following LT. A predominant variant was present in 12 (67%) of the 18 patients before transplantation and the same variant was propagated and remained predominant after LT in 6 (50%) of these patients. In the remaining individuals, there were major changes in the quasispecies composition, mostly occurring during the first days after LT. There was a progressive decrease in the nonsynonymous (dN)/synonymous (dS) ratios from baseline (1.2) to day 4 (.6) (P = .08) and to week 4 after LT (.3) (P = .015). Similarly, genetic distance (GD) declined from baseline (.1) to day 4 (.03) (P = .07) and to week 4 (.04) (P = .04). We did not find any differences in HCV genetic evolution between patients with mild (n = 10) or severe (n = 8) disease recurrence. In conclusion, during the first days following transplantation, HCV quasispecies becomes more homogenous, even after major changes in its composition. Importantly, these changes persist and even increase during the 1st month after transplantation. The "bottleneck" effect caused by the implantation of a new graft and the lack of selective pressure due to the strong immunosuppression most likely explain this particular pattern of genetic evolution.

Adult↗