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PubMed2004

[Forest Inventory Data (FID)-based biomass models and their prospects].

Forest Inventory Data (FID)-based biomass models are important methods in assessing forest biomass at landscape, regional, and national scales, and play an important role in studying terrestrial carbon budget and global changes. In this paper, Forest Inventory Data were reviewed, FID-based models were summarized, and shortages of FID-based models were analyzed. Based on these analyses, the future tasks were pointed out: 1) Comprehensive effect of forest biological factors and non-biological factors on forest biomass, especially on forest volume and age; 2) Identification of the relationships between total forest biomass and live wood biomass; 3) Development of remote sensing- and FID-based forest biomass models. These researches will provide new methods and theoretical bases for estimating forest biomass and carbon budget.

Biomass↗

PubMed2006

[Distribution patterns of Fraxinus mandshurica root biomass, specific root length and root length density].

Employing soil core method, an investigation in Maoershan Experiment Station was made on the root biomass, specific root length (SRL), and root length density (RLD) of Fraxinus mandshurica plantation (17 yr) within a growth season in stand level. The results showed that the total root biomass was 1,637 g x m(-2), in which, living biomass accounted for 85%, and necrotic biomass was 15%. In the living biomass, coarse roots (5 approximately 30 mm in diameter) had the highest percentage (69.95 %), followed by fine roots (< 1 mm in diameter) (13.53 %), medium roots (2 approximately 5 mm in diameter) (7.21%), and small roots (1 approximately 2 mm in diameter) (9.31%). Among the four diameter classes, fine roots had a higher SRL (32.20 m x g(-1)), while coarse roots had a lower one (0.08 m x g(-1)). The total RLD in living biomass was 6,602.54 m x m(-2) in stand level, among which, fine root accounted for 92.43%, and the others was less than 8%. Fine root biomass and RLD had a positive correlation with soil available nitrogen, while no significant correlation was found between SRL and soil available nitrogen.

Biomass↗

PubMed1998

Biomass growth monitoring using pressure drop in a cocurrent biofilter

The possibility of following the biomass growth by pressure drop measurement was investigated in an aerated cocurrent upflow fixed-bed bioreactor continuously fed with wastewater containing industrial organic pollutants. The experiments were carried out in a biological filtration oxygenated reactor (Biofor) pilot plant packed with expanded clay balls (Biolite) of 2.7-mm diameter, which served as biomass carriers. The column was equipped for on-line pressure drop measurements. Correlation between pressure drop measurements and Reynolds numbers of air and water were determined in experiments carried out without biomass. Under operating conditions with biomass, it was demonstrated that column clogging and the operating time between washing cycles can be predicted depending on the volumetric organic load for a given total organic carbon inlet concentration. The biological activity of the fixed biomass was estimated from the oxygen consumption rate per unit time and carrier area. The oxygen consumption rate measurements demonstrated that the biological activity depends on the inlet substrate concentration, and that the Biofor column was most efficient between 75 and 100 g m-3 of total organic carbon inlet concentration. In the course of the wastewater treatment, using pressure drop measurements, the equivalent diameter of the Biolite particles, the reduced column macroporosity, and the biofilm thickness were calculated. An expression correlating biofilm density and biofilm thickness, as determined from the pressure drop measurements, was proposed. Good agreement was found between the fixed biomass in the reactor, determined as volatile suspended solids, and the biologically active biomass, estimated by respirometry. Copyright 1998 John Wiley & Sons, Inc.

Journal Article↗

PubMed2006

Toxic effects of thiol-reactive compounds on anaerobic biomass.

The objective of this study was to characterize the toxic effects of three well known thiol-reactive electrophilic compounds, N-ethylmaleimide (NEM), pentachlorophenol (PCP) and 1-chloro-2,4-dinitrobenzene (CDNB) on anaerobic biotransformation process. The work was part of a larger investigation on potassium efflux as a possible response mechanism of anaerobic microorganisms to the presence of thiol-reactive organic compounds and the interference of such compounds on the reductive dehalogenation process. Using anaerobic toxicity assay (ATA) and granular anaerobic biomass from a full-scale upflow anaerobic sludge blanket (UASB) reactor, inhibitory concentrations of these compounds that reduced the microbial activity of granular biomass to 50% of a control (IC50) were determined to be 592, 0.97, and 450 mg/l for NEM, PCP, and CDNB, respectively. Toxicity of NEM was also tested on anaerobic biomass from a municipal wastewater treatment plant digester and slightly lower IC50 of 532 mg/l was obtained. The results presented here indicate that anaerobic biomass can acclimate to the three thiol-reactive compounds studied and recover from inhibition as long as the toxicant concentration is below a threshold level. That threshold concentration was found to be 500 mg/l for NEM on biomass from the municipal digester, 1 mg/l for PCP, and 500 mg/l for CDNB, both on granular biomass. Granular anaerobic biomass showed recovery even at NEM concentrations of 1000 mg/l.

Bacteria, Anaerobic↗

PubMed2004

Bioreactor culture of oil palm (Elaeis guineensis) and effects of nitrogen source, inoculum size, and conditioned medium on biomass production.

We report the successful culture of oil palm (Elaeis guineensis Jacq.) suspension cells in a bioreactor. In vitro propagation of this perennial monocotyledonous tree is an important part of the oil palm industry's approach to clonal propagation of high-yielding accessions. During culture of oil palm cells in a batch bioreactor, nutrients and extracellular metabolites were monitored, and kinetic parameters and nutrient-to-biomass conversion yields were calculated. The biomass increased approximately 3.5-fold per month, consistent with values reported for shake flask cultures. Although the carbon source was completely depleted by the end of the run, nitrogen sources remained in large excess and the sugar-to-biomass conversion yield remained low. Linear growth indicated that the cells were limited. The results obtained from the bioreactor runs indicated that we should be able to improve biomass production by carrying out optimization studies. Therefore, we initiated multi-factorial analyses using response surface experimental designs to investigate the effects of different nitrogen sources, as well as inoculum size and conditioned medium, on biomass production in flask cultures. Whereas glutamine does not have a significant effect on biomass production, ammonia has a positive effect up to an optimum concentration. Both inoculum density and conditioned medium have positive, synergistic effects on biomass production.

Arecaceae↗

PubMed1993

The effects of acid rain and ozone on biomass and leaf area parameters of shortleaf pine (Pinus echinata Mill.).

Shortleaf pine (Pinus echinata Mill.) seedlings in 24 open-top chambers were exposed to combinations of ozone (carbon-filtered (control), ambient, 1.7 x ambient, and 2.5 x ambient) and acidic precipitation (pH 5.3, 4.3 and 3.3) for 16 months (1989 harvest) or 28 months (1990 harvest). Although the effects of acid rain were generally not significant, there was a trend toward increased aboveground biomass and leaf area in seedlings subjected to the low pH treatments. Because N concentrations in the soils generally increased with decreasing pH, we concluded that the effects of acid rain on aboveground biomass and leaf area were a consequence of an increasing concentration of soil N. In the 1989 harvest, seedlings in the 2.5 x ambient ozone treatment had significantly less biomass in all aboveground plant components and significantly less total leaf area than seedlings in the 1.7 x ambient ozone treatment. In the 1990 harvest, there were no significant effects of ozone on total aboveground biomass, although there was a trend toward reduced biomass in seedlings in the 2.5 x ambient ozone treatment. Both total leaf area and leaf biomass were significantly less in seedlings exposed to 2.5 x ambient ozone for 28 months than in both control seedlings and seedlings in the 1.7 x ambient ozone treatment. The greater, but not always significant, aboveground biomass and leaf area of seedlings in the 1.7 x ambient ozone treatment compared with control seedlings may be associated with the observed increase in soil nitrate concentration as a result of increased rates of leaf senescence and litterfall.

Journal Article↗

PubMed2004

Lignification and structural biomass production in tobacco with suppressed caffeic/5-hydroxy ferulic acid-O-methyl transferase activity under ambient and elevated CO concentrations.

To investigate the relationship between growth, biomass partitioning and lignification we used tobacco (Nicotiana tabacum) in which O-methyl transferase (OMT) activity, an enzyme involved in the pathway of sinapyl alcohol formation for lignin synthesis, was suppressed by antisense transformation. To modulate growth, controls and transformed tobacco plants were grown under ambient (approximately 380 p.p.m) or elevated CO(2) (700 p.p.m), respectively. Lignin concentrations and composition were determined with spectrophotometric methods (thioglycolate and acetyl bromide) and Fourier transform infrared (FTIR) spectroscopy, respectively. A comparison of the thioglycolate and acetylbromide method suggested that the thioglycolate method was sensitive to changes in the syringyl/guaiacyl (S/G)-ratio in lignin and therefore not suitable for quantification in tissues with altered lignin composition. Growth under elevated CO(2) increased leaf and stem biomass of both genotypes by 40 and 20%, respectively, compared with ambient CO(2) and had no effect on root biomass. OMT suppression did not affect lignin concentrations in the leaves but caused a shift in biomass partitioning from the structural to the non-structural fraction. Elevated CO(2) caused a shift towards production of structural compounds resulting in decreased foliar lignin concentrations and indicating that the lignin/structural mass ratio is flexible in leaves. By contrast, the lignin concentrations of stems were unaffected by elevated CO(2) or OMT suppression and increased about three-fold from the apex to the base. Antisense-OMT plants produced more stem biomass than controls but showed no changes of the relative partitioning of biomass to the different pools. This indicates that the metabolic control of carbon fluxes to the production of structural versus non-structural fractions is tighter in stems than in leaves. FTIR spectroscopy indicated a relative increase in guaiacyl- as compared with syringyl-units in antisense-OMT tobacco, which was more pronounced under elevated as compared with ambient CO(2). Since there was no evidence for decreased lignin concentrations in the antisense-OMT plants but increased biomass formation we suggest that less methylated lignins are 'cheaper' in biosynthetic carbon and energy demand and, thus, may enable plants to allocate increased resources to growth.

Journal Article↗

PubMed1989

Kinetics of xanthan production when NH3-N limits biomass synthesis and glucose limits polysaccharide synthesis.

The bacterium Xanthomonas campestris, which synthesizes the commercially important polysaccharide xanthan, was grown aseptically in 1.2 L fermenters using semicontinuous cell culture technique (d' = 0.0035 h-1). The effects of carbon-substrate concentration on xanthan production were investigated at three initial glucose concentrations (Go = 15, 20, 25 g/L). Cell biomass synthesis was nitrogen-limited by use of a chemically defined medium that contained NH3-N as the sole nitrogen source at a concentration where it was exhausted before glucose. A linear relationship between biomass synthesis and NH3-N depletion was observed. This relationship remained valid only until NH3-N exhaustion, after which biomass concentration slowly rose another 20 percent before declining. Another linear relationship was found between xanthan synthesis and glucose uptake. This relationship was unaffected by the disappearance of NH3-N and held through glucose exhaustion. The quasi-stoichiometric yield coefficients obtained for each linear relationship were not affected by G0-. Biomass synthesis kinetics showed no variation with G0 before NH3-N exhaustion; afterwards, cell biomass decline was delayed by increasing G0. Xanthan synthesis kinetics displayed no detectable response to depletion of NH3-N and plateauing of biomass concentration; however, there was a marked slow down in the net rate of xanthan synthesis and a drop in xanthan yield after cell biomass decline became noticeable.

Ammonia↗

PubMed2004

[Dynamics of microbial biomass P and its affecting factors in a long-term fertilized black soil].

This paper studied the microbial biomass P in a long-term fertilized black soil. The soil was fertilized by farmyard manure (M2, M4) and chemical fertilizer (NPK), and the dynamics of soil microbial biomass P was monitored during crop growth season. The results showed that the microbial biomass P in different treatments was 8.75-47.68 mg x kg(-1) (M4), 3.02-37.16 mg x kg(-1) (M2), 1.59-10.62 mg x kg(-1) (NPK), and 0.76-6.74 mg x kg(-1) (CK). The microbial biomass P in M4 and M2 was the highest at reproductive growth stage, and that in NPK and CK was the highest at early growth stage. The significant difference of soil microbial biomass P induced by different amounts and types of fertilizer application was not varied with the period and stage of plant growth. In all treatments, no significant correlation was found between the dynamics of soil microbial biomass P and the soil biological, physical and chemical properties in plant growth period. Soil microbial biomass P had a very significant positive correlation with soil biological, physical and chemical properties (expect K), and a significant positive correlation with the N, P and K contents of plants and soil water content.

China↗

PubMed1984

A comparison of bacterial and fungal biomass in several cultivated soils.

Bacterial and fungal biomass was estimated in incubated samples of three cultivated soils, the influence of glucose, ammonium nitrate and cattle slurry on its formation being studied. The microbial biomass was determined in stained microscopic preparations of soil suspension. Bacterial biomass in the control samples was from 0.17 to 0.66 mg dry wt per 1 g dry soil and independently of the applied supplements was on the average two times larger in muck soils than in sand. Fungal biomass in the control soils ranged from 0.013 to 0.161 mg dry wt per 1 g dry soil, no relationship being found between its size and the soil type. As a result, the ratio of the size of fungal to bacterial biomass was dependent on the soil type; in sand the fungal biomass corresponded to 1/3 of the bacterial biomass, and in muck soils--only to 1/7.

Bacteria↗

PubMed1998

Elemental balancing of biomass and medium composition enhances growth capacity in high-density Chlorella vulgaris cultures.

The basic requirements for high-density photoautotrophic microalgal cultures in enclosed photobioreactors are a powerful light source and proper distribution of light, efficient gas exchange, and suitable medium composition. This article introduces the concept of balancing the elemental composition of growth medium with biomass composition to obtain high-density cultures. N-8 medium, commonly used for culturing Chlorella vulgaris was evaluated for its capacity to support high-density cultures on the basis of elemental stoichiometric composition of C. vulgaris. This analysis showed that the N-8 medium is deficient in iron, magnesium, sulfur, and nitrogen at high cell densities. N-8 medium was redesigned to contain stoichiometrically balanced quantities of the four deficient elements to support a biomass concentration of 2% (v/v). The redesigned medium, called M-8 medium, resulted in up to three- to fivefold increase in total chlorophyll content per volume of culture as compared to N-8 medium. Further experiments showed that addition of each of the four elements separately to N-8 medium did not improve culture performance and that balanced supplementation of all four deficient elements was required to yield the improved performance. Long-term (24 d) C. vulgaris culture in M-8 medium showed continuous increase in chlorophyll content and biomass throughout the period of cultivation. In contrast, the increase in chlorophyll content and biomass ceased after 7 and 12 d, respectively in N-8 medium, demonstrating the higher capacity of M-8 medium to produce biomass. Thus, the performance of high cell density photobioreactors can be significantly enhanced by proper medium design. The elemental composition of the biomass generated is an appropriate basis for medium design.

Biomass↗

PubMed2001

Biomass plug development and propagation in porous media.

Exopolymer-producing bacteria can be used to modify soil profiles for enhanced oil recovery or bioremediation. Understanding the mechanisms associated with biomass plug development and propagation is needed for successful application of this technology. These mechanisms were determined from packed-bed and micromodel experiments that simulate plugging in porous media. Leuconostoc mesenteroides was used, because production of dextran, a water-insoluble exopolymer, can be controlled by using different carbon sources. As dextran was produced, the pressure drop across the porous media increased and began to oscillate. Three pressure phases were identified under exopolymer-producing conditions: the exopolymer-induction phase, the plugging phase, and the plug-propagation phase. The exopolymer-induction phase extended from the time that exopolymer-producing conditions were induced until there was a measurable increase in pressure drop across the porous media. The plugging phase extended from the first increase in pressure drop until a maximum pressure drop was reached. Changes in pressure drop in these two phases were directly related to biomass distribution. Specifically, flow channels within the porous media filled with biomass creating a plugged region where convective flow occurred only in water channels within the biofilm. These water channels were more restrictive to flow causing the pressure drop to increase. At a maximum pressure drop across the porous media, the biomass yielded much like a Bingham plastic, and a flow channel was formed. This behavior marked the onset of the plug-propagation phase which was characterized by sequential development and breakthrough of biomass plugs. This development and breakthrough propagated the biomass plug in the direction of nutrient flow. The dominant mechanism associated with all three phases of plugging in porous media was exopolymer production; yield stress is an additional mechanism in the plug-propagation phase.

Biodegradation, Environmental↗

PubMed2001

Biomass production and secretion of hydrolytic enzymes are influenced by the structural complexity of the nitrogen source in Fusarium oxysporum and Aspergillus nidulans.

The structural complexity of the nitrogen sources strongly affects biomass production and secretion of hydrolytic enzymes in filamentous fungi. Fusarium oxysporum and Aspergillus nidulans were grown in media containing glucose or starch, and supplemented with a nitrogen source varying from a single ammonium salt (ammonium sulfate) to free amino acids (casamino acids), peptides (peptone) and protein (gelatin). In glucose, when the initial pH was adjusted to 5.0, for both microorganisms, higher biomass production occurred upon supplementation with a nitrogen source in the peptide form (peptone and gelatin). With a close to neutrality pH, biomass accumulation was lower only in the presence of the ammonium salt. When grown in starch, biomass accumulation and secretion of hydrolytic enzymes (amylolytic and proteolytic) by Fusarium also depended on the nature of the nitrogen supplement and the pH. When the initial pH was adjusted to 5.0, higher growth and higher amylolytic activities were detected in the media supplemented with peptone, gelatin and casamino acids. However, at pH 7.0, higher biomass accumulation and higher amylolytic activities were observed upon supplementation with peptone or gelatin. Ammonium sulfate and casamino acids induced a lower production of biomass, and a different level of amylolytic enzyme secretion: high in ammonium sulfate and low in casamino acids. Secretion of proteolytic activity was always higher in the media supplemented with peptone and gelatin. Aspergillus, when grown in starch, was not as dependent as Fusarium on the nature of nitrogen source or the pH. The results described in this work indicate that the metabolism of fungi is regulated not only by pH, but also by the level of structural complexity of the nitrogen source in correlation to the carbon source.

Amylases↗

PubMed2004

Preliminary biomass characterization in a sequencing batch biofilm reactor.

The paper reports the results of an investigation aimed to evaluate the influence of hydrodynamic conditions on physical and biochemical characteristics of granular sludge obtained in a SBBR system. Biomass density resulted very high, i.e. 70-125 gTSS/L(biomass), and this permitted to achieve a biomass concentration such high as 17-45 gTSS/L(bed). An appropriate equation proved that the pressure loss, an easily measurable parameter, can be used for biomass porosity measurement and indirect assessment of biomass concentration in the biofilter. As for biomass biochemical characterisation, the EPS (Extracellular Polymeric Substances) content was rather low (5-7% of the total organic matter) and mostly made up of proteins whereas the cellular protein content, a parameter frequently used as an indicator of microorganisms activity, was high (30-60% of total organic matter).

Biofilms↗

PubMedDate not supplied

The biomass dynamics of cyanobacteria in an annual cycle determined by confocal laser scanning microscopy.

We recently published a method for estimating cyanobacteria biomass in delta microbial mats from the Ebro river using confocal laser scanning microscopy (CLSM). The present paper uses this method for identifying different groups of cyanobacteria and for determining their biomass dynamics. Microcoleus chthonoplastes and the Lyngbya-Oscillatoria were the most important contributors to the cyanobacterial biomass throughout the study. Biomass values ranged from 1.29 to 6.55 mgC/cm2 sediment for Microcoleus chthonoplastes, and from 128 microgC/cm2 to 3.16 mgC/cm2 sediment for Lyngbya-Oscillatoria. This technique is useful for determining biomass and for studying filamentous cyanobacteria as well as ramified eukaryotic cells. Confocal serial sections through the samples can be obtained. Two-dimensional images from the samples can be used to calculate the biomass of individual cells.

Biomass↗

PubMed2001

The dynamics of the macromolecular composition of biomass.

The biomass composition of microorganisms depends on the growth conditions. This study explores whether a two-component model can explain how the elemental and macromolecular composition of the biomass of bacteria varies with the specific growth rate. The model describes the rates at which microorganisms assimilate substrates into reserves and utilize reserves for maintenance and growth. Crucial model assumptions are that biomass consists of reserves and structure and that each of these components has an invariant composition. The composition of biomass can vary when the ratio between reserves and structure varies. Literature data on the macromolecular composition of Escherichia coli, cultivated on various substrates, show that the protein, RNA and DNA content of biomass follow a distinctive trend when plotted as a function of the dry-weight-specific growth rate. This observation leads to the proposition that the macromolecular composition of E. coli depends directly on the growth rate, and only indirectly on the carbon- and energy-source used as substrate. We show that the variation of the macromolecular composition of E. coli over its entire range of growth rates can be described with invariant macromolecular compositions of the reserve and structural components of biomass. The model is also applied to our data on a succinate-limited continuous culture of Paracoccus denitrificans.

Animals↗

PubMed2002

On the allometry of biomass partitioning and light harvesting for plants with leafless stems.

Prior explicit allometric models are extended to predict the scaling relationship between the ability of plants with leafless stems to harvest sunlight H and total standing plant biomass M(T) (which equals the sum of standing stem and root biomass, M(S) and M(R)). Provided that H scales in a directly proportional manner (isometrically) with respect to either stem surface area (i.e.H proportional, variant SA(S) ) or total stem biomass (i.e. H proportional, variant M(S)), the allometric model presented here predicts that SA(S) proportional, variant M(T)(3/4) or M(S) proportional, variant M(T)(3/4), respectively. These alternative predictions are tested empirically using data for standing stem and root biomass gathered for the large columnar cactus species Pachycereus pringlei. Statistical comparisons between observed and predicted scaling relationships indicate that SA(S) proportional, variant M(T)(3/4), whereas M(S) proportional, variant M(T)(3/4) is mathematically inconsistent with the observation that stem biomass scales nearly isometrically with respect to root biomass. The contention that the H of leafless stems scales isometrically with respect to stem surface area is thus reasonable both theoretically and empirically.

Biomass↗

PubMed2002

Quantitative distribution of microbial biomass in the soil profile of a high-mountain grassy ecosystem.

The soil microbiota of a grassy ecosystem in the subalpine belt of the Rila Mountain National Park showed greater amounts of fungal biomass. This remained relatively constant throughout the months of sampling while bacterial biomass was a dynamic value fluctuating within a wide range. The two groups of microorganisms also differed in their in-depth distribution in the soil profile: the bacterial biomass was relatively homogeneously distributed while the fungal biomass gradually decreased with depth. Good correlation between the amount of biomass and the values of some abiotic factors of the environment was shown by correlation analysis in a "warm" period of investigation; no distinct correlation between microbial biomass and environmental factors was observed in a "cold" period.

Altitude↗