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At least 127 records · Page 7Linked to original sources

Keys and the crisis in taxonomy: extinction or reinvention?

Dichotomous keys that follow a single pathway of character state choices to an end point have been the primary tools for the identification of unknown organisms for more than two centuries. However, a revolution in computer diagnostics is now under way that may result in the replacement of traditional keys by matrix-based computer interactive keys that have many paths to a correct identification and make extensive use of hypertext to link to images, glossaries, and other support material. Progress is also being made on replacing keys entirely by optical matching of specimens to digital databases and DNA sequences. These new tools may go some way toward alleviating the taxonomic impediment to biodiversity studies and other ecological and evolutionary research, especially with better coordination between those who produce keys and those who use them and by integrating interactive keys into larger biological Web sites.

Animals↗

Coupled nonlinear Schrödinger equations with cubic-quintic nonlinearity: Integrability and soliton interaction in non-Kerr media.

We propose an integrable system of coupled nonlinear Schrödinger equations with cubic-quintic terms describing the effects of quintic nonlinearity on the ultrashort optical soliton pulse propagation in non-Kerr media. Lax pairs, conserved quantities and exact soliton solutions for the proposed integrable model are given. The explicit form of two solitons are used to study soliton interaction showing many intriguing features including inelastic (shape changing or intensity redistribution) scattering. Another system of coupled equations with fifth-degree nonlinearity is derived, which represents vector generalization of the known chiral-soliton bearing system.

Journal Article↗

Diet, anthropometry and breast cancer: integration of experimental and epidemiologic approaches.

The interrelation ships of dietary fat and energy, growth rates and anthropometry, and breast carcinogenesis have been examined by a diverse array of approaches throughout the last 50 y as new investigative tools have been developed by laboratory scientists and epidemiologists. A consensus among investigators has not emerged, however, and dietary recommendations for breast cancer prevention have not been clearly formulated or effectively communicated to the public. Indeed, the gap between those investigators utilizing laboratory-based approaches and those using epidemiologic models has expanded in recent years. Cancer epidemiologists have become increasingly skeptical that results derived form laboratory animal models of breast carcinogenesis and in vitro systems are directly applicable to human breast cancer risk. Concurrently, laboratory scientists have questioned the ability of epidemiological tools to accurately measure dietary intake and relevant biomarkers and to account for a diverse array of potentially confounding environmental and genetic factors characteristic of human populations under study. These polarized views are reinforced by a failure of investigators using diverse approaches to interact, integrate their skills and resources, develop novel hypotheses, and propose solutions using both laboratory and epidemiologic techniques. Therefore, the objectives of this symposium are to summarize experimental and epidemiologic knowledge, foster communication and collaboration, and attempt to identify appropriate studies to bridge the gaps in our knowledge concerning dietary lipid and energy, anthropometrics, and breast cancer risk.

Animals↗

Muscle O2 transport and O2 dependent control of metabolism.

Whether maximal oxygen uptake (VO2max) during exercise in healthy subjects reflects limitation of the supply of oxygen to muscle mitochondria or an inability to use oxygen beyond some biochemical limit remains debated. This paper summarizes evidence for the hypothesis that VO2max is limited by O2 supply. How the many steps in the pathway for oxygen interact to determine maximum oxygen supply is analyzed, resulting in a mathematical model of predictive value. A major component of this model is the diffusional transport of oxygen out of the muscle microcirculation. The proportionality between VO2max and the capillary to mitochondrion partial pressure gradient (as FIO2 is altered) supports this hypothesis, but does not exclude the existence of convective heterogeneity of blood flow as a factor contributing to the limitation of VO2max. Although there is no direct method for measuring convective heterogeneity, altering hemoglobin P50 permits distinguishing diffusive from convective elements in limiting VO2max, and both the underlying theory and the results are summarized herein. Our conclusion is that VO2max in health appears limited by the supply of oxygen to the mitochondria, which in turn, depends upon the integrated interaction among all of the diffusive and convective steps in the oxygen pathway between the environment and the mitochondria.

Blood Pressure↗

Transcriptional regulation of tyrosine hydroxylase by estrogen: opposite effects with estrogen receptors alpha and beta and interactions with cyclic AMP.

Reported effects of estrogen administration on tyrosine hydroxylase (TH) gene expression are confusing. Therefore, we studied the mechanism of regulation of TH transcription by estrogen with different estradiol receptor (ER) subtypes. PC12 cells, transiently co-transfected with expression vector for ERalpha or ERbeta, and luciferase gene under control of the TH promoter, were treated with 17 beta-estradiol (E2). E2 doubled luciferase activity with ERalpha; however, it was decreased with ERbeta. Mapping the TH promoter showed that the putative half estrogen response element (ERE) motif at - 675, as well as the activation protein 1 motif at - 205, were not required for response to E2 with either ER. The specificity protein 1/early growth response gene 1 (Egr 1) motif was required for the E2-elicited response with ERbeta, but not with ERalpha. Deletion of the cyclic AMP/Ca2+ response element (CRE/CaRE) nearly abolished E2-triggered responses with either ER. Further analysis revealed an imperfect canonical putative ERE overlapping with CRE/CaRE and Nurr1 response element. Oligonucleotides spanning this ERE displayed binding to ER, Cyclic AMP Response Element Binding Protein (CREB) and other proteins. Moreover, E2 attenuated the increase in TH transcription seen with cyclic AMP analogs. Thus, TH is transcriptionally regulated by estradiol in opposite directions depending on ER subtype. The overlapping ERE and CRE/CaRE may integrate interactions elicited by various regulators of TH transcription including cAMP and estrogens.

Amino Acid Motifs↗

Mycophenolic acid-induced GTP depletion also affects ATP and pyrimidine synthesis in mitogen-stimulated primary human T-lymphocytes.

BACKGROUND: Mycophenolate mofetil (MMF) is an effective immunosuppressant developed for use in organ transplantation. It specifically targets lymphocyte purine biosynthesis. However, side effects do occur. Understanding how the active metabolite of MMF, mycophenolic acid (MPA) affects the normally integrated interaction between intracellular purine and pyrimidine pathways might aid the development of improved therapeutic regimes. METHODS: We used a primary human T-lymphocyte model to study how preincubation with MPA (0.1-50 microM) affected normal ribonucleotide pool responses to phytohemagglutinin using radiolabeled precursors. RESULTS: MPA not only restricted the mitogen-induced expansion of GTP pools, but actually induced a severe drop in both GTP (10% of unstimulated cells) and GDP-sugar pools, with a concomitant fall in ATP (up to 50%). These effects were concentration dependent. By contrast, uridine pools expanded whereas CTP pools remained at resting levels. These changes were confirmed by the altered incorporation of [14C]-bicarbonate and [14C]-glycine into nucleotides. Restriction of [14C]-hypoxanthine incorporation and reduction of [14C]-uridine uptake comparable to that of unstimulated cells indicated that MPA also inhibited both salvage routes of nucleotide synthesis. CONCLUSION: MPA affects pyrimidine as well as purine responses to mitogens in T-lymphocytes, but not in an integrated way. The molecular mechanisms underlying these disproportionate changes can best be explained by MPA-related inhibition of amidophosphoribosyltransferase, catalysing the first step in purine biosynthesis. This would increase phosphoribosylpyrophosphate availability, thereby stimulating UTP biosynthesis. Such imbalances, coupled with ATP-depletion, could underlie reported side effects and might be overcome by appropriate combination therapies.

Adenosine Triphosphate↗

Architecture of health information systems. State of the art and new perspectives.

In last years, requirements for health information systems have markedly increased. From essentially sectorial requirements limited to the single operational units, the need has emerged for the interaction and integration of the various components of the health care structure, within the service and over the territory. A major role in this evolutionary process is played by the architectural features of the information system. They must respond to precise requirements of standardization, modularity and openness so as to allow the integration and interaction of different, even if preexisting, applications and of different suppliers. In this article, some fundamental aspects of the architecture of health information systems are discussed based on actual experiences as well as on results of the principal approaches to standardization in Italy and Europe.

Europe↗

Promoting autistic children's peer interaction in an integrated early childhood setting using affection activities.

Group affection activities were used to increase the interaction of three autistic children with their nonhandicapped peers in an integrated early childhood setting. Peer interaction increased during free play when the affection activities were conducted, but not when similar activities without the affection component were used. This interaction included initiations by both the autistic and nonhandicapped children, with reciprocal interactions occurring more frequently with nonhandicapped peers who had participated in the affection activities.

Affect↗

Mechanism of LIGHT/interferon-gamma-induced cell death in HT-29 cells.

LIGHT is a member of tumor necrosis factor (TNF) superfamily, and previous studies have indicated that in the presence of interferon-gamma (IFN-gamma), LIGHT through LTbetaR signaling can induce cell death with features unlike classic apoptosis. In present study, we investigated the mechanism of LIGHT/IFN-gamma-induced cell death in HT-29 cells, where the cell death was profoundly induced when sub-toxic concentrations of LIGHT and IFN-gamma were co-treated. LIGHT/IFN-gamma-induced cell death was accompanied by DNA fragmentation and slight LDH release. This effect was not affected by caspase, JNK nor cathepsin B inhibitors, but was partially prevented by p38 mitogen-activated protein kinase (MAPK) and poly (ADP-ribose) polymerase (PARP) inhibitors, and abolished by aurintricarboxylic acid (ATA), which is an inhibitor of endonuclease and STATs signaling of IFN-gamma. Immunobloting reveals that LIGHT/IFN-gamma could induce p38 MAPK activity, Bak and Fas expression, but down-regulate Mcl-1. Besides, LIGHT/IFN-gamma could not activate caspase-3 and -9, but decreased mitochondrial membrane potential. Although LIGHT could not affect IFN-gamma-induced STAT1 phosphorylation and transactivation activity, which was required for the sensitization of cell death, survival NF-kappaB signaling of LIGHT was inhibited by IFN-gamma. These data suggest that co-presence of LIGHT and IFN-gamma can induce an integrated interaction in signaling pathways, which lead to mitochondrial dysfunction and mix-type cell death, not involving caspase activation.

Apoptosis↗

Riparian plant species loss alters trophic dynamics in detritus-based stream ecosystems.

Riparian vegetation is closely connected to stream food webs through input of leaf detritus as a primary energy supply, and therefore, any alteration of plant diversity may influence aquatic ecosystem functioning. We measured leaf litter breakdown rate and associated biological parameters in mesh bags in eight headwater streams bordered either with mixed deciduous forest or with beech forest. The variety of leaf litter types in mixed forest results in higher food quality for large-particle invertebrate detritivores ('shredders') than in beech forest, which is dominated by a single leaf species of low quality. Breakdown rate of low quality (oak) leaf litter in coarse mesh bags was lower in beech forest streams than in mixed forest streams, a consequence of lower shredder biomass. In contrast, high quality (alder) leaf litter broke down at similar rates in both stream categories as a result of similar shredder biomass in coarse mesh bags. Microbial breakdown rate of oak and alder leaves, determined in fine mesh bags, did not differ between the stream categories. We found however aquatic hyphomycete species richness on leaf litter to positively co-vary with riparian plant species richness. Fungal species richness may enhance leaf litter breakdown rate through positive effects on resource quality for shredders. A feeding experiment established a positive relationship between fungal species richness per se and leaf litter consumption rate by an amphipod shredder (Gammarus fossarum). Our results show therefore that plant species richness may indirectly govern ecosystem functioning through complex trophic interactions. Integrating microbial diversity and trophic dynamics would considerably improve the prediction of the consequences of species loss.

Animals↗

The concentration dependence of the hemoglobin mutual diffusion coefficient.

Laser correlation spectroscopy was used to measure the mutual diffusion coefficient, D, of human cyanomethemoglobin (Fe+++:CN) at varying protein concentrations. These measurements were made at 20 degrees C in a 0.1 M phosphate buffer solution at pH 7.0. For low protein concentrations we find D = (6.43 +/- 0.26) X 10(-7) cm2/s and that there is a near linear decrease from this value at higher concentrations. The linear relation between the diffusion coefficient and protein concentration allows us to deduce the value of the linear frictional volume fraction coefficient, Kf=7.75, and to extrapolate to hemoglobin concentrations equivalent to that in the red blood cell where we estimate D = 4.25 X 10(-7) cm2/s. Various theoretical predictions of the dependence of the mutual diffusion coefficient on concentration are tested; we find that the generalized Stokes-Einstein relation can be made to fit our high concentration data if we assume a hard-sphere model and if we include a term involving a hydrodynamic interaction integral.

Cyanides↗

The value of high quality protein-protein interaction networks for systems biology.

Protein-protein interaction (PPI) networks contain a large amount of useful information for the functional characterization of proteins and promote the understanding of the complex molecular relationships that determine the phenotype of a cell. Recently, large human interaction maps have been generated with high throughput technologies such as the yeast two-hybrid system. However, they are static and incomplete and do not provide immediate clues about the cellular processes that convert genetic information into complex phenotypes. Refined multiple-aspect PPI screening and confirmation strategies will have to be put in place to increase the validity of interaction maps. Integration of interaction data with other qualitative and quantitative information (e.g. protein expression or localization data), will be required to construct networks of protein function that reflect dynamic processes in the cell. In this way, combined PPI networks can become valuable resources for a systems-level understanding of cellular processes and complex phenotypes.

Humans↗

Transcriptional control of precursor proliferation in the early phases of pituitary development.

The anterior pituitary is derived from Rathke's pouch arising from the oral ectoderm. The initial apparently uniform precursor cells proliferate and differentiate into six different cell types that are present in mature gland by integrative interactions between different signaling molecules and transcription factors. This system provides an opportunity to understand gene regulation in the cellular processes of precursor cell proliferation, determination, and differentiation events during organogenesis. Recent studies have made significant advances in our appreciation of the molecular mechanisms by which transcription factors regulate these cellular processes.

Animals↗

Disorders of lymph flow.

Disturbances in blood capillary exchange of fluid, macromolecules, and cells across intact and abnormal microvessels and deranged lymphatic transport are integral, interacting components in disorders of tissue swelling. Lymphedema or low-output failure of the lymph circulation is often indolent for many years before lymphatic insufficiency (failure) and tissue swelling emerge and persist. Superimposed occult or overt infection (lymphangitis) are probably major contributors to progressive limb deformity (elephantiasis). Long-standing lymphedema is characterized by trapping in the skin and subcutaneous tissue of fluid, extravasated plasma proteins, and other macromolecules: impaired immune cell trafficking; abnormal processing of autologous and foreign antigens; heightened susceptibility to superimposed infection; local immunodysregulation; defective lymphatic (lymphangion) propulsion from an imbalance of mediators regulating vasomotion; soft-tissue overgrowth; scarring and hypertrophy; and exuberant angiogenesis occasionally culminating in vascular tumors (Fig. 8). In contrast to the blood circulation, where flow depends primarily on the propulsive force of the myocardium, lymph propulsion depends predominately on intrinsic truncal contraction, a phylogenetic vestige of amphibian lymph hearts. Whereas venous "plasma" flows rapidly (2-3 l/min) against low vascular resistance, lymph flows slowly (1-2 ml/min) against high vascular resistance. On occasion, impaired transport of intestinal lymph may be associated with reflux and accumulation and leakage of intestinal chyle in a swollen leg. Although the term "lymphedema" is usually reserved for extremity swelling, the pathogenesis of a wide variety of visceral disorders also may be traceable to defective tissue fluid and macromolecular circulation and impaired cell trafficking of lymphocytes and macrophages. Thus, lymph stasis, with impaired tissue fluid flow, underlies or complicates an indolent subclinical course with a long latent period and sporadic episodes of lymphangitis, which culminates in intense scarring. Examples are pulmonary fibrosis (e.g., pneumoconiosis), regional enteritis, retroperitoneal fibrosis, and perhaps chronic pancreatitis and cirrhosis of the liver. Transdifferentiation and ultimately transformation of endothelial and other vascular accessory cells during lymph stasis also may be pivotal to a wide range of dysplastic and neoplastic vascular disorders, including Stewart-Treves angiosarcoma, AIDS-associated Kaposi's sarcoma, and lymphangitic metastatic carcinomatosis. Lymphscintigraphy has now replaced conventional lymphography as the procedure of choice to corroborate the diagnosis of peripheral lymphedema, whereas MR imaging using paramagnetic and superparamagnetic contrast agents has the potential to yield huge dividends in furthering understanding of a variety of enigmatic edematous states, including lymphedema. Not only are better explanations and insights into swelling disorders likely to be forthcoming, but, equally important, these new, safe, noninvasive imaging techniques can and should be used to monitor the evolution and document the efficacy of commonly advocated operations and nonoperative remedies for defective lymph transport and function.

Diagnostic Imaging↗

The exocyst complex binds the small GTPase RalA to mediate filopodia formation.

The Ras-related small GTPase RalA is involved in controlling actin cytoskeletal remodelling and vesicle transport in mammalian cells. We identified the mammalian homologue of Sec5, a subunit of the exocyst complex determining yeast cell polarity, as a specific binding partner for GTP-ligated RalA. Inhibition of RalA binding to Sec5 prevents filopod production by tumor necrosis factor-alpha (TNF-alpha) and interleukin-1 (IL-1) and by activated forms of RalA and Cdc42, signalling intermediates downstream of these inflammatory cytokines. We propose that the RalA-exocyst complex interaction integrates the secretory and cytoskeletal pathways.

Animals↗

Astrocyte dysfunction in neurological disorders: a molecular perspective.

Recent work on glial cell physiology has revealed that glial cells, and astrocytes in particular, are much more actively involved in brain information processing than previously thought. This finding has stimulated the view that the active brain should no longer be regarded solely as a network of neuronal contacts, but instead as a circuit of integrated, interactive neurons and glial cells. Consequently, glial cells could also have as yet unexpected roles in the diseased brain. An improved understanding of astrocyte biology and heterogeneity and the involvement of these cells in pathogenesis offers the potential for developing novel strategies to treat neurological disorders.

Amyotrophic Lateral Sclerosis↗

[New method of MR-guided mammary biopsy].

PURPOSE: With a recently installed new open MR tomograph (Signa SP, General Electric MS) it is possible for the first time to examine patients with obscure lesions of the mamma by MR imaging in a sitting position, similar to mammography. METHOD: The newly developed positioning device with integrated surface coil permits in combination with the vertical gap in the new magnet and imaging of the mamma with a "real time" sequence a biopsy procedure within a short time and in a manner that is acceptable for the patient. By means of an integrated interactive scan plane guiding system ("flash point tracking system") and special MR-compatible needles and wires tissue samples can be taken, or marking by a wire can be carried out within a short time. RESULTS: Phantom experiments and first in vivo experience (10 patients) show that by means of the new mamma fixation and biopsy device a MRI of one breast in a sitting position for detecting an enhancing lesion and a MR-guided biopsy of this lesion is possible. The whole procedure takes about 25-35 minutes, comparable to the conventional stereotactic method. CONCLUSION: Direct patient access and the interactive guided biopsy allow in future both new diagnostic information (histological results after biopsy or after wire-guided open biopsy of a lesion only visible in MR) and the development of minimal invasive therapeutic procedures, e.g. MR-guided and -controlled interstitial thermotherapy.

Biopsy↗

Consensual validation of clinical practice model practice guidelines.

Clinical Practice Model (CPM) Practice Guidelines facilitate the delivery of consistent, high-quality patient care by clarifying nursing services and supporting the practice and documentation of each step of the nursing process. CPM Practice Guidelines are unique because they are part of an integrated interactive systems thinking framework to support professional practice; they are reviewed and improved routinely using multiple sources of data and are used by hundreds of nurses daily throughout the United States and Canada. Guidelines are developed using a rigorous standardized format and process. Consensual validation is an important part of establishing and maintaining the credibility of these Guidelines.

Humans↗