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At least 1,261 records · Page 70Linked to original sources

PubMed2004

Demography in relation to population density in two herbivorous marsupials: testing for source-sink dynamics versus independent regulation of population size.

We compared demography of populations along gradients of population density in two medium-sized herbivorous marsupials, the common brushtail possum Trichosurus vulpecula and the rufous bettong Aepyprymnus rufescens, to test for net dispersal from high density populations (acting as sources) to low density populations (sinks). In both species, population density was positively related to soil fertility, and variation in soil fertility produced large differences in population density of contiguous populations. We predicted that if source-sink dynamics were operating over this density gradient, we should find higher immigration rates in low-density populations, and positive relationships of measures of individual fitness--body condition, reproductive output, juvenile growth rates and survivorship--to population density. This was predicted because under source-sink dynamics, immigration from high-density sites would hold population density above carrying capacity in low-density sites. The study included 13 populations of these two species, representing a more than 50-fold range of density for each species, but we found that individual fitness, immigration rates and population turnover were similar in all populations. We conclude that net dispersal from high to low density populations had little influence on population dynamics in these species; rather, all populations appeared to be independently regulated at carrying capacity, with a balanced exchange of dispersers among populations. These two species have suffered recent reductions in range, and they are ecologically similar to other species that have declined to extinction in inland Australia. It has been argued that part of the cause of the vulnerability of species like these is that they exhibit source-sink dynamics, and disturbance to source habitats can therefore cause large-scale population collapses. The results of our study argue against this interpretation.

Animals↗

PubMed2004

Emergence of non-random structure in local food webs generated from randomly structured regional webs.

Previous studies have shown that high-resolution, empirical food webs possess a non-random network structure, typically characterized by uniform or exponential degree distributions. However, the empirical food webs that have been investigated for their structural properties represent local communities that are only a subset of a larger pool of regionally coexisting species. Here, we use a simple model to investigate the effects of regional food web structure on local food webs that are assembled by two simple processes: random immigration of species from a source web (regional food web), and random extinction of species within the local web. The model shows that local webs with non-random degree distributions can arise from randomly structured source webs. A comparison of local webs assembled from randomly structured source webs with local webs assembled from source webs generated by the niche model shows that the former have higher species richness at equilibrium, but have a nonlinear response to changing extinction rates. These results imply that the network structure of regional food webs can play a significant role in the assembly and dynamics of local webs in natural ecosystems. With natural landscapes becoming increasingly fragmented, understanding such structure may be a necessary key to understanding the maintenance and stability of local species diversity.

Animals↗

PubMed2006

Coexistence in metacommunities: a tree-species model.

Simple patch-occupancy models of competitive metacommunities have shown that coexistence is possible as long as there is a competition-colonization tradeoff such as that of superior competitors and dispersers. In this paper, we present a model of competition between three species in a dynamic landscape, where patches are being created and destroyed at a different rate. In our model, species interact according to a linear non-transitive hierarchy, such that species Y(3) outcompetes and can invade patches occupied by species Y(2) and this species in turn can outcompete and invade patches occupied by the inferior competitor Y(1). In this hierarchy, inferior competitors cannot invade patches of species with higher competitive ability. Analytical results show that there are regions in the parameter space where coexistence can occur, as well as regions where each of the species exists in isolation depending on species' life-history traits associated with their colonization abilities and extinction proneness as well as with the dynamics of habitat patches. In our model, the condition for coexistence depends explicitly on patch dynamics, which in turn modulate the limiting similarity for species coexistence. Coexistence in metacommunities inhabiting dynamic landscapes although possible is harder to attain than in static ones.

Ecosystem↗

PubMed2001

Human demography and reserve size predict wildlife extinction in West Africa.

Species-area models have become the primary tool used to predict baseline extinction rates for species in isolated habitats, and have influenced conservation and land-use planning worldwide. In particular, these models have been used to predict extinction rates following the loss or fragmentation of natural habitats in the absence of direct human influence on species persistence. Thus, where direct human influences, such as hunting, put added pressure on species in remnant habitat patches, we should expect to observe extinction rates higher than those predicted by simple species-area models. Here, we show that extinction rates for 41 species of large mammals in six nature reserves in West Africa are 14-307 times higher than those predicted by models based on reserve size alone. Human population and reserve size accounted for 98% of the observed variation in extinction rates between reserves. Extinction occurred at higher rates than predicted by species-area models for carnivores, primates and ungulates, and at the highest rates overall near reserve borders. Our results indicate that, where the harvest of wildlife is common, conservation plans should focus on increasing the size of reserves and reducing the rate of hunting.

Animals↗

PubMed1993

Insect diversity in the fossil record.

Insects possess a surprisingly extensive fossil record. Compilation of the geochronologic ranges of insect families demonstrates that their diversity exceeds that of preserved vertebrate tetrapods through 91 percent of their evolutionary history. The great diversity of insects was achieved not by high origination rates but rather by low extinction rates comparable to the low rates of slowly evolving marine invertebrate groups. The great radiation of modern insects began 245 million years ago and was not accelerated by the expansion of angiosperms during the Cretaceous period. The basic trophic machinery of insects was in place nearly 100 million years before angiosperms appeared in the fossil record.

Animals↗

PubMed1986

A simple fiber-optic microprobe for high resolution light measurements: application in marine sediment.

A fiber-optic microphobe is described which is inexpensive and simple to build and use. It consists of an 80-micrometers optical fiber which at the end is tapered down to a rounded sensing tip of 20-30-micrometers diameter. The detector is a hybrid photodiode/amplifier. The probe has a sensitivity of 0.01 microEinst m-2 s-1 and a spectral range of 300-1,100 nm. Spectral light gradients were measured in fine-grained San Francisco Bay sediment that had an undisturbed diatom coating on the surface. The photic zone of the mud was only 0.4 mm deep. Measured in situ spectra showed extinction maxima at 430-520, 620-630, 670, and 825-850 nm due to absorption by chlorophyll a, carotenoids, phycocyanin, and bacterio-chlorophyll a. Maximum light penetration in the visible range was found in both the violet and the red < or = 400 and > or = 700 nm.

Cyanobacteria↗

PubMedDate not supplied

[Is there a connection between biodiversity and the greenhouse effect].

It was discussed the role of biodiversity in ecosystems capacity to control CO2 in atmosphere as the main reason not only of "greenhouse effect" but "greenhouse catastrophe". The necessity to perfect the preventive measures has been defined by time factor. This time may be so little for completing the evolution theory and models of biosphere management. The temps of contemporaneous species extinction exceed two orders as minimum ones how it has been known from planet history. It doesn't permit to discharge that evolutional process will be successful to create organisms which have been capable to stabilize biosphere in conditions of its changing status. It's possible that such change may be provocated with the crisis in civilization-biosphere interrelations.

Atmosphere↗

PubMed2006

Collective dynamics of lysozyme in water: terahertz absorption spectroscopy and comparison with theory.

To directly measure the low-frequency vibrational modes of proteins in biologically relevant water environment rather than previously explored dry or slightly hydrated phase, we have developed a broadband terahertz spectrometer suitable for strongly attenuating protein solutions. Radiation is provided by harmonic multipliers (up to 0.21 THz), a Gunn oscillator (at 0.139 THz), and the UCSB free-electron lasers (up to 4.8 THz). Our spectrometer combines these intense sources with a sensitive cryogenic detector and a variable path length sample cell to detect radiation after it is attenuated by more than 7 orders of magnitudes by the aqueous sample. Using this spectrometer, we have measured the molar extinction of solvated lysozyme between 0.075 and 3.72 THz (2.5-124 cm(-1)), and we made direct comparison to several published theoretical models based on molecular dynamics simulations and normal-mode analysis. We confirm the existence of dense, overlapping normal modes in the terahertz frequency range. Our observed spectrum, while in rough qualitative agreement with these models, differs in detail. Further, we observe a low-frequency cutoff in terahertz dynamics between 0.2 and 0.3 THz, and we see no evidence of a predicted normal mode at approximately 0.09 THz for the protein.

Binding Sites↗

PubMed1990

The ribonuclease from an extinct bovid ruminant.

The sequence of the ribonuclease from the ancestor of swamp buffalo, river buffalo, and ox, corresponding approximately to Pachyportax latidens, an extinct ruminant known from the fossil record, has been reconstructed using the rule of 'maximum parsimony'. This protein and two sequences that may have been intermediates in the evolution of modern ribonuclease have been constructed in the laboratory by site-directed mutagenesis, and their properties examined.

Amino Acid Sequence↗

PubMed2002

When the American sea sturgeon swam east.

The two species of Atlantic sea sturgeon on either shore of the North Atlantic, Acipenser sturio in Europe and A. oxyrinchus in North America, probably diverged with the closure of the Tethys Sea and the onset of the North Atlantic Gyre 15-20 million years ago, and contact between them was then presumably precluded by geographic distance. Here we present genetic, morphological and archaeological evidence indicating that the North American sturgeon colonized the Baltic during the Middle Ages and replaced the native sturgeon there, before recently becoming extinct itself in Europe as a result of human activities. In addition to representing a unique transatlantic colonization event by a fish that swims upriver to spawn, our findings have important implications for projects aimed at restocking Baltic waters with the European sturgeon.

Animals↗

PubMed1996

Were bowerbirds part of the New Zealand fauna?

Bowerbirds (Ptilonorhynchidae) have previously been considered to be confined to the Australo-Papuan continental plate. We provide molecular evidence that the extinct New Zealand Piopio Turnagra capensis is, in fact, a bowerbird. Such a finding is surprising on biogeographical grounds. However, recent molecular evidence on the relationships of the New Zealand moas and kiwis with the Australo-Papuan flightless birds suggests the need for a reassessment of current views on the origins of New Zealand's fauna.

Animals↗

PubMed1976

Spectral relations of cone pigments in goldfish.

Dark-adapted retinal cones of goldfish were measured microspectrophotometrically. The three types of spectra so obtained were subjected to a new method of data analysis. In order of types blue (B), green (G), and red (R), the best estimates for lambdamax were 453, 533, and 620 nm; for main band half width, 6,700, 4,700, and 3,900 cm-1. The extinction spectra of 11-cis 3,4-dehydroretinal and those of the three goldfish pigments were progressively fitted with Gaussian curves starting at the low-energy end of their spectra. The sum of the oscillator strengths of the first three Gaussian components throughout the four spectra were found to have nearly equal magnitudes. Functional relationships that connect the Gaussian parameters were obtained by curve-fitting, enabling partial absorption spectra to be generated for any lambdamax. The generated curves predicted the half width and peak extinction of porphyropsin-type absorption spectra more accurately than previously existing nomograms or hypothesis. The epsilonmax values thus obtained were 28,500, 32,000, and 35,700 liter/mole cm for the B-, G-, and R-type goldfish pigments; these were found to be consistent with the experimental determinations of +/- 10% estimated accuracy.

Adaptation, Ocular↗

PubMedDate not supplied

Measuring changes in articulate brachiopod morphology before and after the Permian mass extinction event: do developmental constraints limit morphological innovation?

The pattern of decreasing disparity has been observed in both the metazoans and metaphytes throughout the Phanerozoic. The pattern is manifest as a decreasing trend in the origination of higher taxa. Currently, two competing evolutionary hypotheses have been proposed to explain this phenomenon: the empty ecospace hypothesis and the developmental constraint hypothesis. To empirically distinguish between these hypotheses, the change in disparity before and after the end-Permian mass extinction event was measured in the articulated brachiopods. The assumption is that ecospace-limiting constraints are removed after mass extinctions revealing the effect of developmental constraints. For each taxon within the group, both continuous and discrete character sets were analyzed. Four different measures of disparity were used to analyze each character suite. Additionally, a separate analysis was performed on a subset of the articulated brachiopods, the rhynchonellids and terebratulids. In most cases investigated, disparity rebounded to comparable levels, with the rhynchonellids and terebratulids showing the largest increase in disparity after the end-Permian extinction, a clear example of an increase in disparity without a significant increase in taxonomic diversity. The results indicate that developmental constraints may not be responsible for the decreasing disparity in this group. The more likely scenario is that increasingly structured ecological guilds have made it much more difficult for large increases in disparity to occur.

Animals↗

PubMed1982

A spectrophotometric assay of skin bilirubin in adult Gunn rats.

The present study was undertaken to assess the value of a spectrophotometric method for the assay of bilirubin content in Gunn rat skin. The pigment extraction was performed by incubating skin strips in a barbital-acetate buffered methanol-chloroform mixture at pH 7 for 90 min. The procedure yielded an overall recovery average of 93 +/- 9% which was not influenced when the incubation time was varied from 1 to 2.5 h. The bilirubin concentration in skin extracts was calculated from spectrophotometric absorbance readings and according to the molar extinction coefficient of the pigment in chloroform. Bilirubin appeared to remain stable during the analytical process. The mean bilirubin content as measured by this method was 1.88 mumol/100 g (1.1 mg/100 g). It is concluded that the proposed method is well suited for the investigation of bilirubin skin metabolism.

Animals↗

PubMed2004

Investigation of sorption behavior between pyrene and colloidal organic carbon from activated sludge processes.

The sorption behavior of pyrene for different size fractions of colloidal organic carbon (COC) originating from two biological wastewater treatment facilities (a full-scale activated sludge system (FSAS) and a membrane bioreactor (MBR)) was investigated by fluorescence quenching. Fluorescence lifetime measurements demonstrated a dynamic quenching component in all samples, including the colloidal-free filtrates. COC sorption coefficients (Kcoc) for pyrene ranged from <1 x 10(3) L/kgcoc to 80 x 10(3) L/kgcoc and were comparable to values obtained in the literature for natural organic matter. Both linear and nonlinear behaviors were observed in the Freundlich-described converted isotherms (n = 0.89-2.1). The aromatic content of COC was quantified by the molar extinction coefficient at 280 nm (e280). Good correlations were observed between COC-pyrene sorption coefficients and e280 coefficients, suggesting that e280 may be a useful tool for predicting colloidal transport of hydrophobic organic compounds (HOCs) from activated sludge systems. The removal of COC from treated effluents may appreciably reduce the concentrations of HOCs discharged to receiving streams.

Adsorption↗

PubMed1984

The effects of interference competition on stability, structure and invasion of a multi-species system.

An interference competition model for a many species system is presented, based on Lotka-Volterra equations in which some restrictions are imposed on the parameters. The competition coefficients of the Lotka-Volterra equations are assumed to be expressed as products of two factors: the intrinsic interference to other individuals and the defensive ability against such interference. All the equilibrium points of the model are obtained explicitly in terms of its parameters, and these equilibria are classified according to the concept of sector stability. Thus survival or extinction of species at a stable equilibrium point can be determined analytically. The result of the analysis is extended to the successional processes of a community. A criterion for invasion of a new species is obtained and it is also shown that there are some characteristic quantities which show directional changes as succession proceeds.

Animals↗

PubMed2001

Brucellosis, botflies, and brainworms: the impact of edge habitats on pathogen transmission and species extinction.

Ecological interactions between species that prefer different habitat types but come into contact in edge regions at the interfaces between habitat types are modeled via reaction-diffusion systems. The primary sort of interaction described by the models is competition mediated by pathogen transmission. The models are somewhat novel because the spatial domains for the variables describing the population densities of the interacting species overlap but do not coincide. Conditions implying coexistence of the two species or the extinction of one species are derived. The conditions involve the principal eigenvalues of elliptic operators arising from linearizations of the model system around equilibria with only one species present. The conditions for persistence or extinction are made explicit in terms of the parameters of the system and the geometry of the underlying spatial domains via estimates of the principal eigenvalues. The implications of the models with respect to conservation and refuge design are discussed.

Animals↗

PubMed1986

Facial expressions as excitatory and inhibitory stimuli for conditioned autonomic responses.

Several lines of evidence suggest that emotional responses to facial expressions of emotion have a biological basis. The present study involved 4 experiments where pictures of angry, happy or neutral facial expressions were used as conditioned stimuli in aversive Pavlovian electrodermal conditioning. From an evolutionary perspective it was expected that an angry face should have an excitatory effect on aversively conditioned responses, whereas a happy face should have an inhibitory effect. It was also expected that the effect should be specific for the stimulus person showing the display. The data showed that the stimulus person was a critical mediating factor for obtaining persistent conditioning effects, that is to say, responses which showed resistance to extinction. Persistent responding was primarily manifested when the stimulus person displayed anger during extinction. On the other hand, this effect was inhibited when the person displayed a happy face during extinction. Furthermore, resistance to extinction was increased or decreased dependent on whether the person expressed anger or happiness during acquisition. Thus, consistent with predictions, angry and happy faces exhibited an excitatory and inhibitory effect, respectively, and these effects were mediated by the stimulus person.

Adult↗