SEARCH · PubMed Health

Results for “Geologic Sediments”

Explore indexed PubMed citations for clinical trials, systematic reviews and public health research. Read source abstracts and follow each citation to its original PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,261 records · Page 70Linked to original sources

PubMed2003

Carbohydrate production in relation to microphytobenthic biofilm development: an integrated approach in a tidal mesocosm.

Experiments were performed to evaluate short-term changes in sediment extracellular carbohydrates for a multispecific assemblage of benthic diatoms in relation to physiological status, endogenous migratory rhythms, and environmental conditions. For this purpose, a mesocosm was used, which simulated both tidal and dark: light alternating cycles under controlled conditions. Scanning electronic microscopy in combination with picture analyses indicated that natural diatom migration patterns were reproduced in the mesocosm. Two EPS fractions were operationally separated in colloidal carbohydrate measurements: alcohol-soluble EPS (termed "soluble EPS") and alcohol-insoluble EPS (termed "bound EPS"). Microphytobenthic biomass followed a logistic-type curve and converged toward a maximal value termed the "biotic capacity of the local environment." Both EPS fractions showed oscillations with production during photosynthetic periods and sharp decreases during night immersion periods. Productions of both EPS fractions increased with Chl a production during light periods suggesting a light dependence in relation to migratory patterns. The decreases in both EPS fractions, which occurred during night immersion periods suggest that carbohydrate hydrolysis and/or washaway affected both EPS fractions similarly in benthic environments. Our results confirm the theory according to which the two distinct fractions are under different metabolic controls. No change in soluble EPS release was obtained during the transition from logarithmic to stationary phase. On the other hand, a metabolism modification of microalgae, probably related to ammonium depletion, occurred when cells entered the stationary phase, since there was a high enhancement in bound EPS production. Mesocosm results can serve as a system of reference useful to characterize biofilm development in field investigations and to revisit the effective implication of each EPS fraction in sediment stability.

Biofilms↗

PubMed2004

Biotic disturbance, recolonization, and early succession of bacterial assemblages in intertidal sediments.

The role of disturbance in structuring natural microbial communities has been largely unexplored. Disturbance associated with invertebrate ingestion can reduce bacterial biomass and alter metabolic activities and compositions of bacterial assemblages in marine sediments. The primary objectives of the research presented here were to test whether ingestion by a taxonomically diverse group of deposit feeders constituted a disturbance, and to determine the mechanisms by which bacterial assemblages recover following deposit-feeder ingestion. To test the question of disturbance, we compared fresh egesta vs surficial sediments with respect to bacterial assemblage structure. In emersed intertidal sediments, microbial recovery could be due to regrowth of bacterial populations surviving gut passage or to immigration from adjacent sediments. To differentiate between these modes of recolonization we used field manipulative experiments to exclude migration by isolating freshly extruded fecal coils of three deposit-feeding species from surrounding sediments. We then followed the quantitative and qualitative recovery in egesta and sediments through time using epifluorescence microscopy and PCR-DGGE analysis of 16S rDNA. Our findings indicate that (1) the degree and nature of the disturbance to bacterial assemblages from deposit feeding varies among invertebrate taxa, (2) recovery was significant but incomplete over 3 h, and (3) recolonization of biotically disturbed sediments is dominated by immigration.

Analysis of Variance↗

PubMed2006

Protozoan grazing increases mineralization of naphthalene in marine sediment.

Bacterial decomposition of organic matter is frequently enhanced when protozoa are present. Various mechanisms have been proposed to account for this phenomenon, including effects associated with grazing by protozoa (such as increased recycling of limiting nutrients, removal of senescent cells, or reduction of competition among bacteria) and indirect effects of grazers (such as excretion of bacterial growth factors). Few studies have examined the role of protozoa in bacterial degradation of xenobiotic compounds in sediment containing a natural community of microbes. The effect of protozoa on mineralization of naphthalene was investigated in this study. Laboratory experiments were conducted using field-contaminated estuarine sediment, with the indigenous microbial populations. Mineralization of naphthalene was up to four times greater in treatments with actively grazing protozoa than in treatments containing the grazing inhibitor cytochalasin B. Control experiments confirmed that the grazing inhibitor was not toxic to ciliates but did prevent them from grazing. The grazing inhibitor did not affect growth rates of a mixed culture of sediment bacteria or a pure polycyclic-aromatic-hydrocarbon-degrading strain. Once grazing had been inhibited, supplementing treatments with inorganic N and P, glucose, or additional protozoa failed to stimulate naphthalene mineralization. Naphthalene-degrading bacteria were four to nine times less abundant when protozoan grazing was suppressed. We suggest that protozoa enhance naphthalene mineralization by selectively grazing on those sediment bacteria that ordinarily would outcompete naphthalene-degrading bacteria.

Animals↗

PubMed2006

Analysis of bacterial communities in seagrass bed sediments by double-gradient denaturing gradient gel electrophoresis of PCR-amplified 16S rRNA genes.

Bacterial communities associated with seagrass bed sediments are not well studied. The work presented here investigated several factors and their impact on bacterial community diversity, including the presence or absence of vegetation, depth into sediment, and season. Double-gradient denaturing gradient gel electrophoresis (DG-DGGE) was used to generate banding patterns from the amplification products of 16S rRNA genes in 1-cm sediment depth fractions. Bioinformatics software and other statistical analyses were used to generate similarity scores between sections. Jackknife analyses of these similarity coefficients were used to group banding patterns by depth into sediment, presence or absence of vegetation, and by season. The effects of season and vegetation were strong and consistent, leading to correct grouping of banding patterns. The effects of depth were not consistent enough to correctly group banding patterns using this technique. While it is not argued that bacterial communities in sediment are not influenced by depth in sediment, this study suggests that the differences are too fine and inconsistent to be resolved using 1-cm depth fractions and DG-DGGE. The effects of vegetation and season on bacterial communities in sediment were more consistent than the effects of depth in sediment, suggesting they exert stronger controls on microbial community structure.

Bacteria↗

PubMed2004

Upward cascading effects of nutrients: shifts in a benthic microalgal community and a negative herbivore response.

We evaluated the effects of nutrient addition on interactions between the benthic microalgal community and a dominant herbivorous gastropod, Cerithidea californica (California horn snail), on tidal flats in Mugu Lagoon, southern California, USA. We crossed snail and nutrient (N and P) addition treatments in enclosures on two tidal flats varying from 71 to 92% sand content in a temporally replicated experiment (summer 2000, fall 2000, spring 2001). Diatom biomass increased slightly (approximately 30%) in response to nutrient treatments but was not affected by snails. Blooms of cyanobacteria (up to 200%) and purple sulfur bacteria (up to 400%) occurred in response to nutrient enrichment, particularly in the sandier site, but only cyanobacterial biomass decreased in response to snail grazing. Snail mortality was 2-5 times higher in response to nutrient addition, especially in the sandier site, corresponding to a relative increase in cyanobacterial biomass. Nutrient-related snail mortality occurred only in the spring and summer, when the snails were most actively feeding on the microalgal community. Inactive snails in the fall showed no response to nutrient-induced cyanobacterial growths. This study demonstrated strongly negative upward cascading effects of nutrient enrichment through the food chain. The strength of this upward cascade was closely linked to sediment type and microalgal community composition.

Animal Nutritional Physiological Phenomena↗

PubMed2006

Geochemical index of trace metals in the surficial sediments from the western continental shelf of India, Arabian Sea.

The present study focuses on the determination and abundance of trace metals (viz. Cu, Ni, Zn, Cr, Co, Cd, Mn and Fe) in the surficial sediments of west coast of Arabian Sea along the Indian subcontinent. Sediment samples were collected from three transects along the western continental shelf of Arabian Sea. The enrichment of Fe and Mn in coastal oxic-sediments indicates the precipitation of these redox sensitive elements as Fe- and Mn-hydroxides and oxides, whereas the low Fe and Mn concentrations in the oxygen deficient sediments of deeper stations reflects the dissolution of their hydroxides and oxides. Concentrations of fairly redox insensitive trace metals like Cu, Ni, Zn, Cr and Cd (with the exceptions of Cr) showed higher values at nearshore sediments, then it decreased towards seaward and again showed a slight increase at oxygen minimum stations in all the three transects. This geochemical variability in their distributional characteristics is mainly associated with the extent to which the precipitation or dissolution of Fe- and Mn-oxides/hydroxides occur since the scavenging or releasing effects of Fe- and Mn-oxides/hydroxides act as significant 'sinks' or 'sources' of heavy metals. The change in wind pattern, coastal upwelling and increased productivity are also the reported factors which influence the biogeochemical cycling of trace metals in the surface sediments of west coast of India. Enrichment factor generally showed a high gradient accumulation from nearshore to shelf.

Geography↗

PubMed2006

Relationships between toxicity and concentrations of chemical contaminants in sediments from Sydney Harbour, Australia, and vicinity.

Correlation analyses between measures of toxicity and concentrations of chemical contaminants were conducted for 103 surficial sediments from Sydney Harbour, Australia, and vicinity. Toxicity tests consisted of amphipod survival and reburial tests of whole sediments (Corophium colo), sea urchin fertilisation and larval development tests of pore waters (Heliocidaris tuberculata) and microbial bioluminescence (Microtox) tests of solvent extracts and pore waters. Toxicity in most tests correlated with concentrations of metallic contaminants, in particular, zinc, lead and copper. Organic contaminants did not correlate as significantly with toxicity. However, Heliocidaris tuberculata showed relationships with organochlorine compounds in samples with low to moderate metals contamination. Toxicity in the Microtox solvent extract test appeared to be primarily influenced by the presence of sulfur. This study has no precedent in Australia and the results support the validity of using local indigenous species in toxicity tests of field-collected sediments. This toxicity/chemistry dataset may be used in evaluations of sediment quality guidelines recently introduced to Australia.

Amphipoda↗

PubMed2006

Recent years status of sediment bed of Golden Horn (Istanbul) after year 1999.

Golden Horn is an estuary in Istanbul. It has connection with Marmara Sea directly and with Black Sea via Bosphorus, and was polluted by different kinds of industrial plants up to 1999. In addition to this, municipal wastewater of around one million people has been discharged to here. Greater part of the estuary was almost blocked off by sediment islands. Extensive effort was spent to dredge sediment in 1999. This created quite a convenient condition for aquatic medium in the estuary. In this research, the variations of chemical compositions of sediment bed were investigated to get clue about ecological conditions of the estuary. For that purpose, sediment samples were taken from 6 stations along the estuary in 2001, 2003 and 2004. The sediment samples were analyzed for inorganic and organic constituents. Meanwhile, water samples (from the surface and just above benthic mass) were also taken from the same 6 places and they were analyzed to verify the data from sediment samples. By this way, correlations between sediment mass and water body were determined.

Conservation of Natural Resources↗

PubMed2005

Determination of sorption coefficients of pharmaceutically active substances carbamazepine, diclofenac, and ibuprofen, in sandy sediments.

Laboratory batch studies were conducted to characterize the sorption behavior of three pharmaceutically active substances (carbamazepine, diclofenac, and ibuprofen) in different sediment types. The sediments were natural sandy sediments from the water saturated zone and the unsaturated zone in the Berlin (Germany) area. They are characterized as medium and fine-grained sands, both with low organic carbon content. The results of the experiments show that sorption coefficients were generally quite low. Distribution coefficients (K(d) values) determined by the batch experiments varied from 0.21 to 5.32 for carbamazepine, 0.55 to 4.66 for diclofenac, and 0.18 to 1.69 for ibuprofen. Comparison of the organic carbon normalized sorption coefficient K(OC) values based on correlation equations with actual experimental data revealed that the calculated data for carbamazepine is of the same order as the experimental data. For diclofenac and ibuprofen the calculated values are much higher than the experimental data, showing a much higher mobility of diclofenac and ibuprofen in natural aquifer sediments than indicated by correlation equations based on octanol water distribution coefficients.

Adsorption↗

PubMed2005

Distribution patterns of particulate trace metals in the water column and nepheloid layer of the Gulf of Riga.

The dynamics (fate) of trace metals in suspended particulate matter within the Gulf of Riga has not yet been adequately addressed in the scientific literature. Therefore, during a two year period (2001-2002) samples of suspended particulate matter and surface sediments for trace metal analysis were collected in the Gulf of Riga and the Daugava river, and these data were combined with background information from the national marine monitoring program in Latvia. This paper presents a descriptive study of solid phase trace metals (aluminium, iron, cadmium, chromium, copper, manganese, nickel, lead and zinc) dynamics and their spatial distribution within the Gulf of Riga based on Principal Component Analysis and Cluster analysis. Fluvial particulate matter and particulate Al, Fe, Cr and Ni were brought into the Gulf of Riga mainly during spring flood and thereafter quickly diluted by the water masses of the Gulf of Riga. Fine-grained suspended material and particulate Al and Fe were well mixed and evenly distributed through all deepwater basins of the Gulf of Riga. The increase of particulate Mn below the thermocline in August and a strong negative correlation with dissolved oxygen concentrations suggested that particulate Mn in the water column and the sediments were regulated mainly by changing oxic-anoxic conditions in the sediments of the Gulf of Riga. The observed correlation between Al and Fe in the water column is in contrast to that observed in the nepheloid layer where Fe correlated with Mn, obviously due to fast diagenetic processes on sediment surface. The observed negative correlation of Cd and Zn with total carbon and total nitrogen in the nepheloid layer might indicate different sedimentation mechanisms of these elements, however, this assumption is still inconclusive.

Carbon↗

PubMed2005

Effects of zero-valent iron (Fe0) and temperature on the transformation of DDT and its metabolites in lake sediment.

Zero-valent iron improves the transformation of DDT [1,1,1-trichloro-2,2-bis(p-chlorophenyl)ethane] and its metabolites in aged and highly contaminated lake sediment under biotic conditions. The addition of Fe0 has a strong effect on transformation rates at 22 degrees C and 9 degrees C, the most enhanced degradation being obtained for DDT and DDOH [2,2-bis(p-chlorophenyl)ethanol]. At 22 degrees C and 10 weeks' incubation, the DDT concentration is reduced from 2.75 micromol g(-1) (974 mg kg(-1)) to 0.98 micromol g(-1) (346 mg kg(-1)) and 1.98 micromol g(-1) (702 mg kg(-1)) in samples with and without the addition of iron, respectively. After 40 weeks' incubation these concentrations have further decreased to 0.19 micromol g(-1) (66 mg kg(-1)) and 0.74 micromol g(-1) (264 mg kg(-1)). There is no significant transformation of any of the compounds at 9 degrees C without the addition of Fe0. In the presence of iron, however, DDT is reduced to 1.25 micromol g(-1) (442 mg kg(-1)) within 40 weeks' incubation. This study demonstrates the ability of adapted microorganisms to transform DDT under elevated temperatures in original, aged sediments, and also the stimulating effect of zero-valent iron, which is significant even at low temperatures.

DDT↗

PubMed2006

Matrix-bound phosphine in Antarctic biosphere.

Phosphine (PH(3)) is a natural gaseous carrier of phosphorus in its geochemical cycles, and it might be of importance to the phosphorus balance of natural ecosystem. For the first time phosphine levels were investigated in the Earth's coldest, driest, and most southerly Antarctic biosphere. Matrix-bound phosphine (MBP) was found in sea animal guanos, ornithogenic sediments and soils. Phosphine concentrations varied with different sea animal guanos. Average phosphine concentrations in empire penguin, gentoo penguin, sea lion, skua and gull guanos were 2.54+/-1.28 ng kg(-1), 6.21+/-2.15 ng kg(-1), 9.12+/-4.66 ng kg(-1), 11.90+/-1.29 ng kg(-1) and 14.55+/-6.74 ng kg(-1), respectively. The contents of phosphorus in these various matrixes have an important effect on MBP concentrations. The levels of phosphine appeared an increasing tendency with the content of TP, IP and OP in sea animal guanos, ornithogenic sediments or soils. The correlation between PH(3) and Fe, Mn, Al in these matrixes was also analyzed and discussed. Phosphine showed an obviously positive correlation with Fe in sea animal guanos. However, excessively high Fe, Al and Mn may inhibit the formation of PH(3) in the ornithogenic soils or sediments in the Antarctic biosphere.

Animals↗

PubMed2005

Butyltins in the sediments of Kochi and Mumbai harbours, west coast of India.

Surface sediment samples were collected from various locations in the Mumbai and Kochi harbours, west coast of India, to assess the presence of butyltin compounds. Tributyltin (TBT) and dibutyltin (DBT) varied from 16 to 16,816 ng/g dry wt. and from undetected to 469 ng/g dry wt., respectively, of the sediment in Kochi harbour. In Mumbai harbour, the values of TBT and DBT ranged between 4.5 and 1193 ng/g dry wt. and from undetected to 131 ng/g dry wt. of the sediments, respectively. The concentrations of both TBT and DBT showed strong seasonal variation probably due to the effect of tides and currents. Nevertheless, the levels of butyltin compounds were generally higher at sites influenced by shipping activities such as navigation, dry dock and ship-building activities. The presence of DBT indicates the abiotic or microbiological degradation of TBT. Compared to TBT, DBT was relatively less abundant, suggesting either fresh inputs of TBT and/or less degradation of TBT. The concentrations of TBT showed significant positive relationships with organic carbon and lipid, implying that both lipophilic and ionic interactions were probably involved in controlling the abundance of TBT at these sediments. The observed levels of butyltin compounds are much higher than those required to induce toxic effects on marine organisms, suggesting that these sediments were contaminated with butyltin compounds.

Carbon↗

PubMed2005

Remobilization of metals from slag and polluted sediments (case study: the canal of the Deûle River, northern France).

The anthropogenic impact on the environment in the last century has proven to be very negative due to the fast development of industry. A typical example is the Deûle River in northern France, one of the most polluted sites in this region. The concentrations of Pb, Cd, Zn and Cu in river sediments are 300, 800, 50 and 15 times higher, respectively, than the background values. The present study was undertaken to evaluate the capacity of already polluted sediments to capture metals released from industrial wastes (slag). As it were, in spite of the high metal pollution level, sediments have still shown the ability to adsorb metals released from slag under the conditions provided. Their efficiency in "cleaning up" some of the metals (e.g. Pb) seems to be additionally enhanced in anoxic conditions. This study provided some additional information on the importance of sediments as a pollutant sink.

Aluminum↗

PubMed2005

Sediment deposition rate in the Falefa River basin, Upolu Island, Samoa.

The (137)Cs method was employed to investigate the recent historical rate of sediment deposition on a lowland alluvial floodplain in the Falefa River basin, Upolu Island, Samoa. Caesium stratigraphy in the floodplain sediment profile was clearly defined, with a broad peak at 145-175 cm depth. The measured rate of vertical accretion over the last 40 years is 4.0+/-0.4 cm per year. This rate exceeds observations in humid environments elsewhere, but is similar to that recorded on other tropical Pacific Islands. Available flow data for the Vaisigano River in Samoa give a 'near-catastrophic' index value of 0.6 for flood variability. This is associated with the occurrence of tropical cyclones and storms in the Samoa area. Large floods therefore probably contribute to the high rate of floodplain sedimentation on Upolu Island. A small but growing body of evidence suggests that fluvial sedimentation rates on tropical Pacific islands are some of the highest in the world.

Cesium Radioisotopes↗

PubMed2006

Diffusion of (226)Ra and (40)K radionuclides reproduced in underwater sedimentary columns in laboratory.

The potential radiological impact of the increase of radioactive substances in the environment makes interesting the study of the migration of the contaminant radionuclides in soils and sediments, which are the last receiver system of these substances. By using a battery of sedimentary columns controlled in the laboratory, the diffusion of the (226)Ra and (40)K radionuclides has been studied, assessing their respective effective diffusion coefficients in a similar sedimentary medium. A decreasing temporal evolution is obtained, associated to the progressive 'fixation' of the radionuclides by the clay minerals of the sediment, followed by a constant tendency. A timescale of the 'fixation' by the sediment is determined, being of the order of days for (226)Ra and of the order of months for (40)K, so the progressive 'fixation' of (40)K by the clay minerals of the sediments is slower than in the case of (226)Ra.

Aluminum Silicates↗

PubMed2005

Impact of sediment organic matter quality on the fate and effects of fluoranthene in the infaunal brittle star Amphiura filiformis.

Hydrophobic contaminants, such as polycyclic aromatic hydrocarbons (PAHs) readily adsorb to organic matter. The aim of this study was to determine the importance of the quality of sedimentary organic matter for the uptake, biotransformation and toxicity of the PAH, fluoranthene (Flu), in the infaunal brittle star Amphiura filiformis. Brittle stars were exposed to a base sediment covered by a 2 cm Flu-spiked top layer (30 microg Flu/g dry wt. sed.), enriched to the same total organic carbon content with either refractory or labile organic matter. The labile carbon source was concentrated green flagellate: Tetraselmis spp. The refractory carbon source was lignin from a paper mill. Tissue concentrations of Flu both in disk and arm-fractions were determined as total Flu, parent Flu (i.e. untransformed), aqueous Flu-metabolites, polar Flu-metabolites and tissue residue Flu (i.e. unextractable). Our results showed that sediment particle ingestion is a pathway by which Flu can enter benthic food webs. Flu toxicity (measured as arm-regeneration), but not net accumulation, was dependent on the nutritional quality of the ingested sediment particles. Flu bioaccumulation could not be attributed solely to equilibrium partitioning between organism lipid content and organic content of the sediment. Biotransformation of Flu by brittle stars was very limited and unaffected by organic matter quality. A. filiformis contributed to the downward transport of Flu from the surface sediment to the burrow lining. The limited breakdown of parent Flu by brittle stars and/or microorganisms was relatively higher in burrows compared to surface sediment, and highest in the presence of labile organic matter. Tissue concentrations were higher in disk than in arms, but the proportion of metabolic products relative to parent Flu was higher in arms than in the disk fraction. We estimate that the yearly mobilization of sediment-associated Flu by arm-regeneration in A. filiformis is in the range of 3.8-29.4 microg total Flu eq. m(-2) year(-1) at a sediment concentration of 30 microg Flu/g dry wt. sed.

Animals↗

PubMed2004

Restoration of oiled mussel beds in Prince William Sound, Alaska.

Natural loss of hydrocarbons was often low from mussel (Mytilus trossulus) beds (which were typically not cleaned after the Exxon Valdez oil spill), thus this habitat remained a long-term source of oil. Consequently, experimental restoration of nine contaminated beds was attempted in 1994; mussels were removed, contaminated surface sediment was replaced (33 metric tons), and original mussels were returned. Hydrocarbon concentrations and mussel populations were monitored for 5 years thereafter. Post-restoration mussel population fluctuations were indistinguishable from regional changes. Increased short-term oil loss was apparent, but long-term (5 year) improvement was equivocal and difficult to distinguish from natural losses. By 1999, oil concentrations in mussels were typically at baseline levels in restored and oiled reference beds; concentrations in replaced sediment were elevated in one third of restored beds, indicating recontamination from underlying or surrounding sediment. Our results suggest mussel relocation is feasible but suggest oil might more effectively be removed from sediment mechanically or chemically than manually.

Accidents↗