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Phase transitions of concentrated DNA solutions in low concentrations of 1:1 supporting electrolyte.

Transitions between isotropic and liquid crystalline phases of concentrated solutions of DNA with an average contour length (500 A) near the persistence length were examined in 0.01 M supporting 1:1 electrolyte (predominantly NaCl). A quantitative phase diagram describing the transitions occurring over a DNA concentration range from 100 to 290 mg/mL and temperatures from 20 to 60 degrees C was constructed from solid-state 31P-nmr data and examination of the morphologies of the mesophases by polarized light microscopy. Three anisotropic phases were observed in solutions with DNA concentrations of 160-290 mg/mL: an unidentified, weakly birefringent phase termed "precholesteric," a true cholesteric phase with pitch approximately 2 microns, and a third, presumably more highly ordered phase. Comparison with previous studies showed that the critical concentration for anisotropic phase formation and the nature of the phases formed by these DNA molecules are not strongly affected by decreasing the supporting electrolyte concentration from approximately 0.2 M to 10 mM. There are, however, profound effects of decreasing the supporting electrolyte concentration on the width of the transition from isotropic to totally anisotropic solutions, and the nature of the transitions between phases. Decreasing the supporting electrolyte concentration significantly increases the concentration range of persistence of the isotrophic phase, and results in the formation of triphasic solutions (isotropic and two liquid crystalline phases). Values of the critical DNA concentrations for anisotropic phase formation from the theory of A. Stroobants et al. [(1986) Macromolecules 19, 2232 to 2238] were found to be significantly lower than the observed values for any reasonable estimate of the effective radius, probably because of the relatively short lengths of DNA fragments examined in the present study. Comparison of the experimentally determined DNA concentrations required for anisotropic phase formation with the values predicted from Flory's lattice statistics theory, which explicitly considers the rod length, permitted estimation of the effective DNA radius. The estimated radius was inconsistent with effective radii calculated from Poisson-Boltzmann (P-B) theory based on a supporting electrolyte concentration of 10 mM, but was in fair agreement with P-B theory assuming that Na+ DNA contributes approximately 0.24 Na+ counterions/nucleotide to the effective free sodium ion concentration.

DNA↗

Phase transition of L-Ser monohydrate crystal studied by (13)C solid-state NMR.

We used gravimetric analysis (GA) and (13)C solid-state nuclear magnetic resonance (NMR) to study solid-phase transition from the transparent single crystal of L-serine (L-Ser) monohydrate to a turbid powder. We found that L-Ser monohydrate loses water molecules and transforms into an anhydrate, thus experimentally demonstrating Frey's assumption. Application of a handmade cross-polarization (CP) NMR probe with a saddle-type coil to the oriented crystal of the L-Ser monohydrate revealed the dehydration mechanism. Furthermore, the chemical shift tensor components of the carboxyl carbon in L-Ser monohydrate were determined. The difference in the tensor component of delta(22) between the monohydrate and anhydrate forms was more than 7 ppm, probably owing to differences in the hydrogen-bonding structure of each form.

Crystallization↗

Studies on peroxidation of arachidonic acid in different liposomes below and above phase transition temperature.

The mechanism of Fe-induced peroxidation of arachidonic acid (AA) in small unilamellar vesicles (SUV) of dipalmitoylphosphatidylcholine (DPPC) and dipalmitoylphosphatidylethanolamine (DPPE) was studied below and above gel to liquid-crystalline phase transition temperature (Tm). In both liposomes the AA peroxidation resulted higher in the temperature range below Tm, but the extent of malonyldialdehyde (MDA) formation was dramatically lower in DPPE vesicles when compared with corresponding DPPC liposomes. A possible explanation for this is discussed.

Arachidonic Acids↗

Local distortion induced metal-to-insulator phase transition in PrRu4P12.

Extended x-ray absorption fine structure (EXAFS) experiments have been carried out on PrRu(4)P(12) and PrOs(4)P(12) to study the metal-to-insulator (MI) phase transition in PrRu(4)P(12). No Pr displacement was observed across the MI transition temperature from the EXAFS data. Instead, our EXAFS data clearly show that a Ru displacement is associated with this MI transition. The very high Debye temperature for the Ru-P bond (Theta(D) = 690 K) suggests that a slight rotation/displacement of relatively rigid RuP(6) octahedra leads to this small Ru displacement, which accompanies the MI transition at 62 K in PrRu(4)P(12).

Journal Article↗

Nonequilibrium phase transition on a randomly diluted lattice.

We show that the interplay between geometric criticality and dynamical fluctuations leads to a novel universality class of the contact process on a randomly diluted lattice. The nonequilibrium phase transition across the percolation threshold of the lattice is characterized by unconventional activated (exponential) dynamical scaling and strong Griffiths effects. We calculate the critical behavior in two and three space dimensions, and we also relate our results to the recently found infinite-randomness fixed point in the disordered one-dimensional contact process.

Journal Article↗

Dehydration leads to a phase transition in monoclinic factor XIII crystals.

Monoclinic factor XIII crystals have been transferred to a solution containing increasing amounts of the precipitant PEG 6000. At a concentration of about 36%(w/v) PEG 6000, a phase transition was observed. The space group of the crystals was preserved on the transition, but half of the 2(1) screw axes were lost, which meant that the unit-cell volume and the content of the asymmetric unit were doubled. The structure of factor XIII in the new crystal form was solved by molecular replacement. About 80% of the changes accompanying the transition can be explained by a rigid-body rotation of half of the factor XIII dimers in the lattice by about 5 degrees. The remaining changes are mostly small interdomain movements of the four domains which constitute one factor XIII monomer.

Crystallization↗

Problem-based learning variant: transition phase for a large institution.

OBJECTIVE: To compare students' test scores and perceptions of problem-based learning (PBL) and lecture-based learning (LBL) by applying a PBL-variant. METHOD: For the transition from LBL to PBL, PBL was varied for one discipline only and for a large group of students. Two hundred forty nine second year medical students were taught a topic of Biochemistry by the LBL method and then 141 of these were taught another topic by the PBL-variant. At the conclusion of each topic an MCQ test was given. One week later a 9 item questionnaire was given to the 50 students now attending classes to assess their perceptions of the 2 teaching formats. The test scores of the two methods were compared. Students' ratings were differentiated by the Wilcoxon Signed-Rank test. RESULTS: There was no significant difference in the test scores by PBL or LBL, but PBL received significantly higher student ratings (p < 0.05) than LBL in self-study time, library time, number of books and computer consulted, enthusiasm for the topic, group discussion, depth of knowledge and interest taken in the teaching format. But there was no significant difference in students' ratings of the teacher's importance in either PBL or LBL. CONCLUSION: PBL variant and LBL produced similar MCQ test scores but the former is more conducive to enthusiastic self-study. Thus in the transition phase, PBL may be applied to one discipline and a large group of students without undermining its merits.

Biochemistry↗

Unique hydrogen bonding correlating with a reduced band gap and phase transition in the hybrid perovskites (HO(CH2)2NH3)2PbX4 (X = I, Br).

The first hybrid perovskites incorporating alcohol-based bifunctional ammonium cations, (HO(CH(2))(2)NH(3))(2)PbX(4) (X = I, Br), have been prepared and characterized. (HO(CH(2))(2)NH(3))(2)PbI(4) adopts a monoclinic cell, a = 8.935(1) A, b= 9.056(2) A, c = 10.214(3) A, beta = 100.26(1) degrees , V = 813.3(3) A(3), P2(1)/a, and Z = 2, and (HO(CH(2))(2)NH(3))(2)PbBr(4) is orthorhombic, a = 8.4625(6) A, b = 8.647(1) A, c = 19.918(2) A, V = 1457.5(2) A(3), Pbcn, and Z = 4. In the layered structures, a unique hydrogen-bond network connects adjacent perovskite layers, owing to OH....X, NH(3)(+)....X, and intermolecular NH(3)(+)...OH interactions. Its impact on the bonding features of the inorganic framework and on the quite short interlayer distance, in the case of (HO(CH(2))(2)NH(3))(2)PbI(4), is shown. As a result, a significant red shift of the exciton peaks (lambda = 536 nm (X = I), lambda = 417 nm (X = Br)), compared to other PbX(4)(2)(-)-based perovskite hybrids, is observed, revealing a reduced band gap. A reversible structural transition occurs at T = 96 degrees C (X = I) and T = 125 degrees C (X = Br). An orthorhombic cell of the high-temperature phase of (HO(CH(2))(2)NH(3))(2)PbI(4) with a(HT) = 18.567(6) A, b(HT) = 13.833(6) A, c(HT) = 6.437(2) A, and V = 1653 A(3) is proposed from powder X-ray diffraction. A change in the hydrogen bonding occurs, with molecules standing up in the interlayer space and OH parts probably interacting together, leading to a more conventional situation for ammonium groups and a more distorted perovskite layer. This is in accordance with the blue shift of the exciton peak to lambda = 505 nm (X = I) or to lambda = 374 nm (X = Br) during the phase transition.

Journal Article↗

Photoinduced phase transition in VO2 nanocrystals: ultrafast control of surface-plasmon resonance.

We study the ultrafast insulator-to-metal transition in nanoparticles of VO2, obtained by ion implantation and self-assembly in silica. The nonmagnetic, strongly correlated compound VO2 undergoes a reversible phase transition, which can be photoinduced on an ultrafast time scale. In the nanoparticles, prompt formation of the metallic state results in the appearance of surface-plasmon resonance. We achieve large, ultrafast enhancement of optical absorption in the near-infrared spectral region that encompasses the wavelength range for optical-fiber communications. One can further tailor the response of the nanoparticles by controlling their shape.

Journal Article↗

Rapid changes in transcription and chromatin structure of ribosomal genes in yeast during growth phase transitions.

Transcription of ribosomal genes is coordinated with cellular growth. Changes in transcription may be influenced by an alteration in the number of active ribosomal genes and/or a change in the transcription rate of active genes. We measured changes in rDNA transcription during growth phase transitions in the yeast Saccharomyces cerevisiae and the concomitant changes in chromatin structure of the ribosomal genes. A quantitative transcription run-on (TRO) assay was developed to monitor transcription of ribosomal genes, and rDNA chromatin was separated into active (non-nucleosomal) and inactive (nucleosomal) genes using psoralen photo-crosslinking. TRO indicates that transcription levels of ribosomal genes drop dramatically as cells enter stationary phase, but are rapidly restored when cells are diluted into fresh medium. However, changes in the proportion of active genes during these transitions, although equally rapid, represented only a small fraction of the total rDNA. We conclude that changes in rDNA chromatin structure are temporally coordinated with growth rate, but quantitatively insufficient to account for changes in transcription. These results support the model that regulation of rRNA synthesis occurs mainly by altering the transcription rate of active ribosomal genes, and changes in the number of active rDNA gene copies contribute much less to this regulation.

Chromatin↗

Structural phase transitions of HfV2 at low temperatures.

We report a high-resolution synchrotron X-ray powder diffraction study on HfV(2), hafnium divanadium, at low temperatures. In this work we show, for the first time, a complete sequence of structural phase transitions of HfV(2) from cubic (Fd3m) to tetragonal (I4(1)/amd) to orthorhombic (Imma) in succession as temperature decreases. Peak splitting and extra diffraction peaks owing to lattice distortion can be clearly distinguished for the low-symmetry phases. The atomic positions and lattice parameters were obtained by Rietveld refinement. The bond lengths and angles of the HfV(2) crystal structure at the low-symmetry phases were correctly determined from the structure refinement. The face-centered cubic (Fd3m) unit cell (Z = 24) transforms to a body-centered tetragonal (I4(1)/amd) phase with a 45 degrees rotation relative to the cubic cell and with a reduced number of atoms (Z = 12) in the unit cell at a temperature of T = 112 K. The orthorhombic phase occurs at T = 102 K and it keeps the body-centered symmetry (Imma) and Z = 12 in the unit cell. The refinement results indicate that there may be a small amount of untransformed cubic phase left over in the lower symmetry phases. The abnormal thermal contraction of both tetragonal phase and orthorhombic phase marks the significance of structural change in HfV(2).

Journal Article↗

Photopyroelectric ac calorimetric study of the nematic-smectic-A phase-transition line in binary liquid crystal mixtures with injected smectic-A phases.

Using a recently developed photopyroelectric ac calorimetric technique we investigate two binary liquid crystal mixtures with so-called injected smectic-A phases. Characteristic of these systems is the occurrence of nematic-to-smectic-A transition lines in the phase diagram of mixtures of pure compounds having only a nematic phase. The two binary systems are pentylcyanobiphenyl with either 4-n-propylcyclohexyl-carboxylate or 4-n-pentylphenyl 4(')-n-pentyloxybenzoate. Both these systems have domelike smectic-A ranges with narrow nematic ranges at the top. Near the top the N-SmA transitions are of first order and are crossing over to second order at a tricritical point on either side of the top with the increasing width of the nematic range. The obtained critical exponents are almost completely Fisher renormalized because of the strong concentration dependence of the nematic-to-smectic-A transition temperatures.

Journal Article↗

Partially irreversible cold-induced lipid phase transitions in mammalian sperm plasma membrane domains: freeze-fracture study.

In an effort to investigate the nature of the cellular injury caused when mammalian spermatozoa are cooled prior to cryopreservation, the occurrence of thermal phase transitions amongs the lipid components of the sperm plasma membrane was investigated by the use of freeze-fracture electron microscopy. The mechanisms by which glycerol and egg yolk exert protective effects during semen cooling and freezing were also examined. Ram and blackbuck spermatozoa, maintained at 30 degrees C prior to fixation at this temperature, exhibited randomly distributed intramembranous particles over the acrosomal, postacrosomal, and flagellar regions of the plasma membrane. In contrast, spermatozoa fixed at 5 degrees C after slow cooling to this temperature exhibited particle clustering over the postacrosomal region of the head as well as over the tail. These effects were not influenced by the presence of egg yolk or glycerol during the cooling procedure, although these substances protected the spermatozoa against loss of motility. Particle clustering over the sperm tail, induced by the slow cooling process, was found to be only partially reversible. The extensive areas of particle-free lipid, noted to result from the cooling procedure, were absent if the spermatozoa were rewarmed to 30 degrees C; however, the original distribution of particles was not restored and numerous small particle-free domains persisted. It is proposed that this type of irreversible change within the sperm plasma membrane may contribute to the loss of motility and fertility suffered by spermatozoa after cooling and freezing. Furthermore, it is suggested that protective substances such as egg yolk may exert their effects by countering these deleterious changes, rather than by preventing their occurrence.

Acrosome↗

Comparative effects of short chain alcohols on lipid phase transitions.

We have been systematically investigating the physical interactions of alcohols with synthetic lipids in order to elucidate the mechanisms of alcohol intoxication. It has previously been shown that the effects of ethanol on the phase transition temperatures of saturated chain phosphatidylcholines (PC's) are biphasic [11]. The secondary high concentration effect has recently been shown to be due to a transition to a new completely interdigitated state [16]. In the present report we have investigated the influence of the chain length of the alcohol on the induction of this interdigitated state. We demonstrate that all three alcohols have a biphasic effect on the transition temperature of PC, and the comparison of the concentration dependencies of this effect for the three alcohols provides some insight into the possible mechanism of the transition. The potential biological importance of this secondary alcohol-membrane interaction is discussed.

Alcohols↗

Absorbing-state phase transitions in fixed-energy sandpiles

We study sandpile models as closed systems, with the conserved energy density zeta playing the role of an external parameter. The critical energy density zeta(c) marks a nonequilibrium phase transition between active and absorbing states. Several fixed-energy sandpiles are studied in extensive simulations of stationary and transient properties, as well as the dynamics of roughening in an interface-height representation. Our primary goal is to identify the universality classes of such models, in hopes of assessing the validity of two recently proposed approaches to sandpiles: a phenomenological continuum Langevin description with absorbing states, and a mapping to driven interface dynamics in random media.

Journal Article↗

Bulk-driven nonequilibrium phase transitions in a mesoscopic ring.

We study a periodic one-dimensional exclusion process composed of a driven and a diffusive part. In a mesoscopic limit where both dynamics compete we identify bulk-driven phase transitions. We employ mean-field theory complemented by Monte Carlo simulations to characterize the emerging nonequilibrium steady states. Monte Carlo simulations reveal interesting correlation effects that we explain phenomenologically.

Journal Article↗

Quantum phase transitions in the itinerant ferromagnet ZrZn2.

We report a study of the ferromagnetism of ZrZn2, the most promising material to exhibit ferromagnetic quantum criticality, at low temperatures T as a function of pressure p. We find that the ordered ferromagnetic moment disappears discontinuously at p(c)=16.5 kbar. Thus a tricritical point separates a line of first order ferromagnetic transitions from second order (continuous) transitions at higher temperature. We also identify two lines of transitions of the magnetization isotherms up to 12 T in the p-T plane where the derivative of the magnetization changes rapidly. These quantum phase transitions (QPT) establish a high sensitivity to local minima in the free energy in ZrZn2, thus strongly suggesting that QPT in itinerant ferromagnets are always first order.

Journal Article↗

Transfection-mediated cell synchronization: acceleration of G1-S phase transition by gamma irradiation.

We have previously provided evidence that the uptake of DNA into cells is cell cycle specific following transfection. We show here that, immediately after transfection, successfully transfected cells are greatly enriched for cells in early G1 or G0 phase and that, upon removal of the DNA precipitates, cells progress through G1 and enter S phase in a synchronous fashion. We also demonstrate that this approach can be utilized in meaningful cell-cycle experiments, and we show that gamma irradiation accelerates the G1-S phase transition in a cell line with a functionally inactive p53 protein.

Ataxia Telangiectasia Mutated Proteins↗