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PubMed2001

Methyl t-butyl ether mineralization in surface-water sediment microcosms under denitrifying conditions.

Mineralization of [U-(14)C]methyl t-butyl ether (MTBE) to (14)CO(2) without accumulation of t-butyl alcohol (TBA) was observed in surface-water sediment microcosms under denitrifying conditions. Methanogenic activity and limited transformation of MTBE to TBA were observed in the absence of denitrification. Results indicate that bed sediment microorganisms can effectively degrade MTBE to nontoxic products under denitrifying conditions.

Bacteria↗

PubMed2001

Application of the 5' fluorogenic exonuclease assay (TaqMan) for quantitative ribosomal DNA and rRNA analysis in sediments.

In this study, we report on the development of quantitative PCR and reverse transcriptase PCR assays for the 16S rRNA of Geobacter spp. and identify key issues related to fluorogenic reporter systems for nucleic acid analyses of sediments. The lower detection limit of each assay was 5 to 50 fg of genomic DNA or < or =2 pg of 16S rRNA. TaqMan PCR spectral traces from uncontaminated, amended aquifer sediments were significantly lower (P < 0.0002) than traces for the external standard curve. We also observed a similar, significant decrease in mean quencher emissions for undiluted extracts relative to those for diluted extracts (P < 0.0001). If PCR enumerations were based solely upon the undiluted sample eluant, the TaqMan assay generated an inaccurate result even though the threshold cycle (C(t)) measurements were precise and reproducible in the sediment extracts. Assay accuracy was significantly improved by employing a system of replicate dilutions and replicate analyses for both DNA and rRNA quantitation. Our results clearly demonstrate that fluorescence quenching and autofluorescence can significantly affect TaqMan PCR enumeration accuracy, with subsequent implications for the design and implementation of TaqMan PCR to sediments and related environmental samples.

DNA, Ribosomal↗

PubMed2005

Methanogen diversity evidenced by molecular characterization of methyl coenzyme M reductase A (mcrA) genes in hydrothermal sediments of the Guaymas Basin.

The methanogenic community in hydrothermally active sediments of Guaymas Basin (Gulf of California, Mexico) was analyzed by PCR amplification, cloning, and sequencing of methyl coenzyme M reductase (mcrA) and 16S rRNA genes. Members of the Methanomicrobiales and Methanosarcinales dominated the mcrA and 16S rRNA clone libraries from the upper 15 cm of the sediments. Within the H2/CO2- and formate-utilizing family Methanomicrobiales, two mcrA and 16S rRNA lineages were closely affiliated with cultured species of the genera Methanoculleus and Methanocorpusculum. The most frequently recovered mcrA PCR amplicons within the Methanomicrobiales did not branch with any cultured genera. Within the nutritionally versatile family Methanosarcinales, one 16S rRNA amplicon and most of the mcrA PCR amplicons were affiliated with the obligately acetate utilizing species Methanosaeta concilii. The mcrA clone libraries also included phylotypes related to the methyl-disproportionating genus Methanococcoides. However, two mcrA and two 16S rRNA lineages within the Methanosarcinales were unrelated to any cultured genus. Overall, the clone libraries indicate a diversified methanogen community that uses H2/CO2, formate, acetate, and methylated substrates. Phylogenetic affiliations of mcrA and 16S rRNA clones with thermophilic and nonthermophilic cultured isolates indicate a mixed mesophilic and thermophilic methanogen community in the surficial Guaymas sediments.

DNA, Archaeal↗

PubMedDate not supplied

Of pH and Eh on release of nitrogen and phosphorus from sediments of West Lake.

The effects of pH and Eh on release of nitrogen and phosphorus from sediments of West Lake under different conditions were investigated by simulation test. Results showed that the net flux of NH4(+) -N release from sediments increased with pH, but NO3(-) -N showed negative-going release at all tested pH levels. The net flux of NH4(+) -N release from sediments was higher under anaerobic or aerobic condition of the overlying water, but only under aerobic condition would net release of NO3(-) -N occur. It was also shown that phosphorus released was mainly in its inorganic form, higher pH and anaerobic conditions of overlying water greatly stimulated release of phosphorus. In situ measurement at several West Lake locations indicated that sediment resuspension induced by boat propeller stimulated nutrients release from sediment into overlying water.

Eutrophication↗

PubMed2004

Development of a whole-sediment toxicity test using a benthic marine microalga.

An acute whole-sediment toxicity test with a benthic marine microalga was developed and optimized using flow cytometry to distinguish algae (based on their chlorophyll a autofluorescence) from sediment particles. Of seven benthic marine algae screened, the diatom Entomoneis cf punctulata was most suitable because of its tolerance of a wide range of water and sediment physicochemical parameters, including salinity, pH, ammonia, and sulfide. A whole-sediment and water-only toxicity test based on inhibition of esterase activity in this species was developed. Enzyme activity rather than growth was used as the test endpoint, as nutrient release from sediments has previously been found to stimulate algal growth, potentially masking contaminant toxicity. The sensitivity of the bioassay to a range of metals (copper, zinc, cadmium, lead, arsenic, manganese) and phenol in water-only exposures was compared to the standard 72-h growth rate inhibition test. The esterase enzyme inhibition test was sensitive to copper, with a 3-h inhibitory concentration to cause a 50% (IC50) reduction in a fluorescein diacetate fluorescence value of 97 +/- 39 microg Cu/L. A concentration-dependent response was also observed in the presence of sediment particles (copper tailings), with and without dilution, using a control clean sediment. The primary route of exposure to copper was via pore water rather than by direct contact with tailings particles. This is the first whole-sediment bioassay developed with a benthic alga suitable for sediment quality assessment in marine/estuarine systems, and its advantages and limitations are discussed.

Biological Assay↗

PubMed2005

An evaluation of logistic regression models for predicting amphipod toxicity from sediment chemistry.

An empirical screening level approach was developed to assess the probability of toxicity to benthic organisms associated with contaminated sediment exposure. The study was based on simple logistic regression models (LRMs) of matching sediment chemistry and toxicity data retrieved from a large database of field-collected sediment samples contaminated with multiple chemicals. Three decisions were made to simplify the application of LRMs to sediment samples contaminated with multiple chemicals. First, percent mortality information associated with each sediment sample was condensed into a dichotomous response (i.e., toxic or nontoxic). Second, each LRM assumed that toxicity was attributable to a single contaminant. Third, individual contaminants present at low concentrations were excluded from toxic sediment samples. Based on an analysis of the National Sediment Inventory database, the LRM approach classified 55% of nontoxic sediments as toxic (i.e., false-positives). Because this approach has been used to assess the probability of benthic toxicity as reported by the U.S. Environmental Protection Agency (U.S. EPA), the resultant estimates of potential toxicity convey a misleading impression of the increased hazard that sediments pose to the health of aquatic organisms at many sites in the United States. This could result in important resources needlessly being diverted from truly contaminated sites to evaluate and possibly remediate sediments at uncontaminated sites.

Amphipoda↗

PubMed2005

Environmental fate of the antifouling compound zinc pyrithione in seawater.

To perform a thorough risk assessment of the new antifouling compound zinc pyrithione (ZnPT2), additional information regarding the fate of the compound is needed. The present study examined the recovery and transchelation of ZnPT2 in controlled laboratory experiments, photodegradation experiments, and a fate study in a large-scale field experiment. Chemical analyses were performed using a newly developed method for simultaneous analyses of ZnPT2 and copper pyrithione (CuPT2). Furthermore, two antifouling paints containing ZnPT2 were examined for the fate of leaching biocide. Naturally occurring ligands and metals in seawater influence the stability of ZnPT2. The presence of free Cu2+, which is present naturally in the seawater or is released from copper-containing paints, results in a partial transchelation of ZnPT2 into CuPT2. A complete transchelation of ZnPT2 into CuPT2 was observed when Cu2+ was present at an equimolar concentration in the absence of interfering ligands. When ZnPT2 was leached from antifouling paints containing both ZnPT2 and Cu2O, CuPT2 was found, with no trace of ZnPT2. Photodegradation was low in natural waters and absent from 1 m or more below the surface. The results show that ZnPT2 has a low persistence in seawater when leached from antifouling paints. However, the more stable and toxic transchelation product CuPT2 is formed, which has the potential to accumulate in the sediments and, therefore, should be included in both chemical analysis and risk assessment of ZPT2.

Biodegradation, Environmental↗

PubMed2006

Influence of geomorphological variability in channel characteristics on sediment denitrification in agricultural streams.

Within fluvial systems, the spatial variability of geomorphological characteristics of stream channels and associated streambed properties can affect many biogeochemical processes. In agricultural streams of the midwestern USA, it is not known how geomorphological variability affects sediment denitrification rates, a potentially important loss mechanism for N. Sediment denitrification was measured at channelized and meandering headwater reaches in east-central Illinois, a region dominated by intensive agriculture and high NO(3)-N stream export, between June 2003 and February 2005 using the chloramphenicol-amended acetylene inhibition procedure. Sediment denitrification rates were greatest in separation zones, ranging from 0.6 to 76.4 mg N m(-2) h(-1), compared with riffles, point bars, pools, and a run ranging from 0 to 36.5 mg N m(-2) h(-1). Differences in benthic organic matter (r = 0.70) and the percentage of fine-grained sediments (r = 0.93) in the streambeds controlled much of the spatial variations in sediment denitrification among the geomorphological features. Although two meandering study reaches removed 390 and 99% more NO(3)-N by sediment denitrification than adjacent channelized reaches, NO(3)-N loss rates from all reaches were between 0.1 and 15.7% d(-1), except in late summer. Regardless of geomorphological characteristics, streams in east-central Illinois were not able to process the high NO(3)-N loads, making sediment denitrification in this region a limited sink for N.

Agriculture↗

PubMed2001

Internal nutrient fluxes counteract decreases in external load: the case of the estuarial eastern Gulf of Finland, Baltic Sea.

Despite a decrease of about 30% in the external nutrient inputs, no corresponding improvement has been observed in the state of the open Gulf of Finland. At the end of the 1990s the external nutrient load to the Gulf totalled 120,000 tonnes (t) yr-1 of nitrogen (N) and 7000 t yr-1 of phosphorus (P). Relative to its surface area, the nutrient load of the Gulf is 2 to 3 times the average of the Baltic Sea. Despite the decrease in loading, an increase in the phosphate-P concentration was observed both in the surface and near-bottom layers around the mid-1990s. The reason for this development was most probably the acceleration of internal loading, triggered by poor oxygen conditions at the sediment-water interface of the eastern Gulf, where the oxygen conditions weakened during the 1990s, after being relatively good in the 1980s and the early 1990s. On the basis of experimental data from the coastal Gulf of Finland, the phosphate-P flux from the reduced surface sediment to water averaged 13 kg km-2 d-1. This corresponds to total amounts which can explain the observed trends of P in the open Gulf. The low N:P ratio of the sediment efflux can partly explain the N limitation of primary production in the Gulf.

Baltic States↗

PubMedDate not supplied

Dissolution kinetics of heavy metals in Dutch carbonate- and sulfide-rich freshwater sediments.

In two sulfide-rich freshwater sediments from the Biesbosch and Kromme Rijn River in the Netherlands differing in carbonate content and acid volatile sulfide (AVS) content, metal and sulfide dissolution kinetics were studied at different acid concentrations by varying both the procedure of acid addition and the extraction time. The establishment of equilibrium was monitored by measuring the pH in time, which reached a near constant value. The equilibrium pH was reached quickly when large amounts of acid were added and slowly when small amounts of acid were added. This observation was confirmed by the yield of extracted metals after either a 45-min or 24-h extraction over a pH range from 0 to 5. The pH factor seemed to be of more influence than time for the dissolution of metals. The amount of extracted metals was highly dependent on the metal itself due to its physico-chemical behavior. Although the sediments studied varied in carbonate content, acid volatile sulfide (AVS), and total metal content, the extracted fraction of metals compared with their total content in the sediment was similar for most metals. Finally, the AVS content as well as the ratio of simultaneously extracted metals (SEM; sum of Cd, Cu, Ni, Pb, and Zn) to AVS decreased with increasing pH. Because the SEM to AVS ratio may be used to set environmental quality criteria for the sediment compartment, this observation is of significance.

Carbonates↗

PubMed2002

Distribution of chlorinated hydrocarbons in overlying water, sediment, polychaete, and hornyhead turbot (Pleuronichthys verticalis) in the coastal ocean, Southern California, USA.

1,1,1-Trichloro-2,2-bis(p-chlorophenyl)ethane (DDT) and its primary metabolites (DDTs) and polychlorinated biphenyls (PCBs) are a major source of concern in the Southern California Bight (SCB), USA. The fate of DDTs and PCBs is a key element in assessing the effects imposed by these potential carcinogens on the marine ecosystem. We found that DDTs and PCBs remained widely distributed in the overlying water, sediment, polychaetes, and liver and muscle tissues of the hornyhead turbot (Pleuronichthys verticalis) collected from three nearshore locations of the SCB with different levels of contamination. Student's t tests indicated that the measured partition coefficients between the nonaqueous phases (sediment, polychaete, and fish) and overlying water at a heavily contaminated location were significantly greater than those predicted by the equilibrium partitioning theory (EPT). Measured partition coefficients between the nonaqueous phases and overlying water for a few DDT components at two other stations (moderate and low contamination) were also generally greater than the EPT predictions. On the other hand, DDTs and PCBs in polychaetes and fish tissues may be taken up from sediments via equilibrium partitioning or from food sources. These findings are suggestive of the possibility that contaminated sediments may have become an important source of contamination.

Animals↗

PubMed2002

Carbon and nitrogen distribution in the sediments of lagoon of Ravenna (Italy).

The distribution and the origin of carbon and nitrogen in sediments of an Italian lagoon--located north-east of Ravenna town--were investigated. From 1957 to 1976, the lagoon had been affected by a strong industrial pollution due to an important petrochemical complex. At present, industrial and domestic waste waters undergo a treatment process before being discharged into the lagoon. Sediment samples from 10 locations throughout the lagoon were analysed, in order to document the spatial and vertical distribution of C and N. Data show a very strong variability (organic carbon content varies between 8.9% and 0.14%) and the highest values were found in the immediate vicinity of the industrial discharge. Sediment organic matter shows allochthonous origin in proximity of industrial discharge and autochthonous origin in the remaining areas.

Carbon↗

PubMed2003

Toxicity of aqueous and sediment-associated fluoride to freshwater organisms.

Inorganic fluorides were declared toxic under the Canadian Environmental Protection Act in 1993 based on their potential to cause long-term harmful effects in aquatic and terrestrial ecosystems, but information on the toxicity of sediment-associated fluoride to freshwater benthic organisms was considered incomplete. The purpose of this study was to determine the toxicity of aqueous and sediment-associated fluoride to several species of freshwater organisms and to determine if toxic effects could be expected under environmentally realistic exposures. Toxicity of fluoride (as NaF) in short-term (48-96-h) lethality tests was greatest for the amphipod Hyalella azteca (median lethal concentration [LC50] = 14.6 mg F-/L), followed by the mayfly Hexagenia limbata (32.3), the midge Chironomus tentans (124.1), the fathead minnow Pimephales promelas (262.4), and the cladoceran Daphnia magna (282.8). Relative toxicity in long-term (10-28-d) growth and survival tests in spiked sediment was similar. Hyalella azteca was the most sensitive species for growth (25% inhibitory concentration [IC25] = 290.2 microg F-/g), followed by C. tentans (661.4), H. limbata (1,221.3), and P. promelas (>5,600); H. azteca was also the most sensitive species for survival (LC50 = 1,114.6 microg F-/g), followed by H. limbata (1,652.2) and P. promelas and C. tentans (>5,600 for both). Concentrations of fluoride measured in sediments near some industrial point sources exceed some of these toxicity thresholds. Fluoride is highly mobile in aquatic systems and could potentially reach toxic levels in the water column during dredging to remove fluoride-contaminated sediment.

Amphipoda↗

PubMed2003

Toxic effects of polychlorinated biphenyl bioaccumulation in sea urchins exposed to contaminated sediments.

The uptake patterns and toxicity of polychlorinated biphenyl (PCB) congeners in the white sea urchin, Lytechinus pictus, on exposure to contaminated sediments were investigated. First-order modeling of uptake of the 10 most abundant PCB congeners or domains (containing more than one coeluting congener) by L. pictus indicated that a 35-d exposure was insufficient to reach steady state. Bioaccumulation of PCBs in sea urchins exhibited substantial difference between field and amended sediments, suggesting that caution must be exercised in sample preparation. Some evidence was observed of dependence of measured biota-sediment accumulation factors (BSAFs) on K(ow), indicating that equilibrium partitioning of PCBs may not always be achieved between biota lipid, sediment organic carbon, and water. Survival of L. pictus was unaffected by exposure to field and amended sediments with PCB concentrations varying more than three orders of magnitude. The growth measures (diameter, wt, and gonad wt) were significantly reduced in L. pictus exposed to San Diego Bay ([SDB]; San Diego, CA, USA) sediment, whereas they were relatively unaffected after exposure to amended sediments (with much higher PCB concentrations than SDB sediment) prepared from a New Bedford Harbor (MA, USA) sediment. The toxic effects as measured by the growth rates in L. pictus were likely attributable to polycyclic aromatic hydrocarbons (PAHs), which were elevated in SDB sediment (7.3 microg/g), rather than PCBs.

Animals↗

PubMed2003

Influence of desorption and contact time on sediment-water distribution of spiked polychlorinated biphenyls and polycyclic aromatic hydrocarbons: relation with in situ distribution.

The long-term sediment-water distribution of polychlorinated biphenyls (PCBs) and polycyclic aromatic hydrocarbons (PAHs), spiked to Lake Ketelmeer (The Netherlands) sediment, was studied using a gas-purge technique. Contact times varied from 2 to 1,461 d for the PCBs and from 5 to 100 d for the PAHs. Purge-induced desorption experiments lasted 300 to > 4,000 h. The initial distribution coefficients that were observed during the first part of the experiment were close to literature values for distribution after short contact times. The distribution coefficients increased during the purge-induced desorption experiments. The final distribution coefficients that were observed during the last part of the experiment were one to two orders of magnitude higher than the initial values and were close to distribution coefficients reported earlier for in situ PCBs and PAHs present in a field-contaminated sediment for years to decades. The change in distribution coefficients during a gas-purge experiment may resemble the long-term change in a field sediment. Final distribution coefficients seem to be a more relevant measure for the distribution coefficients of hydrophobic organic chemicals in aged field sediments than values obtained after short contact times.

Adsorption↗

PubMedDate not supplied

[Quality evaluation multiapproach of sediments in water bodies in Southern Italy].

This study reports the toxicity of sediments from rivers and canals collected at two six-month intervals from 19 sampling points of the province of Naples in Southern Italy. The toxicity of the pore-water from sediments was determined with a battery composed of different freshwater microbiotests. The toxicity varied substantially from station to station, but none of the Toxkit tests was either the most or the least sensitive for all stations. Chemical analyses were accomplished on some heavy metals. Furthermore, the in situ biological communities of macroinvertebrates were assessed. Most of tested sediments were found to be very toxic for several if not all the microbiotests as well as the biological communities (EBI). Comparison between toxicological data and heavy metals revealed a positive correlation for zinc and copper. This study confirms that only an integrated approach is suitable for the evaluation of contaminated sediments and that single parameters are not always able to define a situation of environmental deterioration.

Animals↗

PubMed2005

[Distribution and species of mercury in water and sediments from Huangpu River].

Levels of total mercury, soluble mercury and particle mercury in water of Huangpu River change greatly, their average values are (0.4 +/- 0.44) ng/mL, (0.27 +/- 0.42)ng/mL, (0.13 +/- 0.10) ng/mL respectively. Mercury in water is mainly in the form of soluble mercury. Average mercury content in sediment of Huangpu River is relative high and up to (204.03 +/- 97.41) ng/g, with a range of 70.52 ng/g - 387.30 ng/g. Mercury content is high in the middle reach of Huangpu River, especially in section of Xidu-Nanpu Bridge, and low in upstream and downstream. Distribution of mercury is hightly related with distribution of industry plants and farming. Locations with high mercury content in sediment are in the downstream of locations with high mercury content in water. Mercury (in sediments) is mainly in the form of residue, exchangeable ions, and humics-bound, seldom is in the form of carbonate-bound. Contrary to residue-bound mercury, exchangeable mercury is low in the middle reach, and high in upstream and downstream. There mainly are residue-bound mercury and little humics-bound mercury, exchangeable mercury, and carbonate-bound mercury in sediment in profile, and the residue-bound mercury increases irregularly with depth. Nearing the Mouth of Yangtze River, mercury in sediment becomes more active.

China↗

PubMed2005

[Effects of illumination on overlying water quality and on phosphate adsorption by sediment].

By the method of laboratory simulation, this paper studied the effects of illumination on the quality of overlying water and on the phosphate adsorption by sediment in a clean lake region. The results showed that under anaerobic condition, illumination could increase the pH value and the dissolved oxygen (DO) concentration of overlying water, while under aerobic condition, the concentration of dissolved inorganic phosphate (DIP) in overlying water declined fast at the beginning of the experiment, which indicated that DIP concentration was controlled by the DO concentration at the water-sediment interface. With the time went on, the DIP concentration in overlying water was much lower in the light than in the dark, indicating that illumination was the dominant controlling factor to the DIP concentration in overlying water. Phosphate could be adsorbed by the sediment with continuously loading, and the adsorbed amount varied with different environmental conditions. The effect of illumination on the phosphate adsorption by sediment was limited by the environment whether being aerobic or anaerobic.

Bacteria, Aerobic↗