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Silver atoms and strongly interlinking Keggin units ensure the tridimensionnal macrocationic structure of [Ag(6)(PMo(10)V(2)O(40))](CH(3)COO).8H(2)O, which catalyzes O(2)-based oxidation of p-methoxytoluene in acetic acid by air.
The quenching of singlet oxygen (1deltag) by cobalt(III)-bis-1,2-benzosemiquinone-diiminato complexes (general structure LCo(111)(BQDI)2ClO4) has been studied in different solvents by measuring the singlet oxygen phosphorescence decay in time-resolved experiments. The axial ligand (Ph3As, Ph3Sb, N-methyl-imidazole, pyrrolidine) has practically no influence on the quenching; however, the chlorinated benzosemiquinone-diiminato complex has a markedly lower quenching rate constant. The solvent effects can be fully explained by the difference in viscosity, which supports the assumption that the quenching is diffusion controlled. The reactive radius of the encounter pair has been estimated to be 0.3 nm, shorter than the radius of the complex itself, which points to the fact that singlet oxygen must approach the central cobalt atom at the (partially) open axial position. The significance of these results regarding the quenching of singlet oxygen by vitamin B12 derivatives is discussed.
Imide complexes of type Re(V)Cl(3)(X-SB)(NC(6)H(4)Y(p)), with X, Y= H, Me, OMe, Cl have been synthesized where X-SB is the Schiff base of pyridine-2-carboxaldehyde (the corresponding complex is 4), 2-acetylpyridine (5), 2-benzoylpyridine (6), and anilines, p-XC(6)H(4)NH(2). Treatment of 4 or 5 (but not 6) with aqueous nitric acid in acetonitrile afforded Re(VI)Cl(3)(X-PA)(NC(6)H(4)Y(p)), 7, via oxygen atom transfer (X-PA = monoanionic picolinamide). In the structures of 5(X=Cl,Y=Cl), 6(OMe,OMe), and 7(Me,Me), the chlorine atoms are meridionally disposed in a ReCl(3)N(3) coordination sphere. The trans influence of the imide nitrogen considerably lengthens the Re-N(pyridine) bond. The ReNC(6)H(4)Y(p) group has the triple-bonded linear moiety, Re&tbd1;N-C. The amide group in 7(Me,Me) is planar. In 6(OMe,OMe) the two aryl rings on the imine function block water attack and hence amide formation. The rhenium(VI)-rhenium(V) E(1/)(2) values for 4-6 (0.7-1.0 V vs SCE) are much higher than that for 7 (E(1/2) approximately 0.15 V), which displays the rhenium(VII)-rhenium(VI) couple near 1.6 V. Six EPR hyperfine lines are observed for solutions of 7 at room temperature (g(iso) approximately 1.91; A(av) approximately 490 G). Crystal data for the complexes are as follows: 5(Cl,Cl), empirical formula C(19)H(15)Cl(5)N(3)Re, crystal system monoclinic, space group P2(1)/c, a = 13.360(6) Å, b = 12.110(3) Å, c = 14.954(9) Å, beta = 111.41(4) degrees, V = 2252.4(1.7) Å(3), Z = 4; 6(OMe,OMe), empirical formula C(26)H(23)Cl(3)N(3)O(2)Re, crystal system orthorhombic, space group Pbca, a= 12.079(5) Å, b = 17.083(9) Å, c = 26.049(9) Å, V = 5375.4(4.0) Å(3), Z = 8; 7(Me,Me), empirical formula C(20)H(18)Cl(3)N(3)ORe, crystal system monoclinic, space group P2(1)/c, a = 7.071(2) Å, b = 17.541(6) Å, c = 16.857(8) Å, beta = 100.59(3) degrees, V = 2055.3(1.3) Å(3), Z = 4.
Nuclear pore complexes (NPCs) are large macromolecular assemblies embedded in the double membrane nuclear envelope. They are the major gateways mediating transport of ions, small molecules, proteins, RNAs, and ribonucleoprotein particles in and out of the nucleus in interphase cells. Understanding structural changes at the level of individual pores will be a prerequisite to eventually correlate the molecular architecture of the NPC with its distinct functional states during nucleocytoplasmic transport. Toward this goal, we have employed time-lapse atomic force microscopy of native NPCs kept in buffer, and recorded calcium-mediated structural changes such as the opening (i.e. +Ca2+) and closing (i.e. -Ca2+) of individual nuclear baskets. Most likely, this structural change of the nuclear basket involves its distal ring which may act as an iris-like diaphragm. In order to directly correlate distinct structural features with corresponding functional states and dynamic aspects, we also addressed the question of whether the "central plug" or "transporter" actually represents a calcium-sensitive component of the NPC involved in mediating nucleocytoplasmic transport. Our data indicate that in the absence of ATP, cytoplasmic plugging/unplugging of the NPC is insensitive to calcium.
Methoxypoly(ethylene glycol)-block-poly(L-lysine) dendrimer was designed to form a water-soluble complex with plasmid DNA. The copolymer was synthesized by the liquid-phase peptide synthesis method. It was characterized by 1H NMR and matrix-assisted laser desorption ionization-time-of-flight (MALDI-TOF) mass spectrum. Agarose gel electrophoresis and DNase I protection assay proved that this linear polymer/dendrimer block copolymer assembled spontaneously with plasmid DNA, forming a water-soluble complex which increased the stability of the complexed DNA. Atomic force microscopy of the complex was evaluated at various charge ratios showing that the copolymer/DNA complex was like a globular shape.
Oxygen atom transfer from (NH(3))(4)(H(2)O)RhOOH(2+) to organic and inorganic nucleophiles takes place according to the rate law -d[(NH(3))(4)(H(2)O)RhOOH(2+)]/dt = k[H(+)] [(NH(3))(4)(H(2)O)RhOOH(2+)][nucleophile] for all the cases examined. The third-order rate constants were determined in aqueous solutions at 25 degrees C for (CH(2))(5)S (k = 430 M(-)(2) s(-)(1), micro = 0.10 M), (CH(2))(4)S(2) (182, micro = 0.10 M), CH(3)CH(2)SH (8.0, micro = 0.20 M), (en)(2)Co(SCH(2)CH(2)NH(2))(2+) (711, micro = 0.20 M), and, in acetonitrile-water, CH(3)SPh (130, 10% AN, micro = 0.20 M), PPh(3) (3.74 x 10(3), 50% AN), and (2-C(3)H(7))(2)S (45, 50% AN, micro = 0.20 M). Oxidation of PPh(3) by (NH(3))(4)(H(2)O)Rh(18)O(18)OH(2+) produced (18)OPPh(3). The reaction with a series of p-substituted triphenylphosphines yielded a linear Hammett relationship with rho = -0.53. Nitrous acid (k = 891 M(-)(2) s(-)(1)) is less reactive than the more nucleophilic nitrite ion (k = 1.54 x 10(4) M(-)(2) s(-)(1)).
The molecular and crystal structure of steffimycin have been determined by single crystal X-ray diffraction to 0.9 angstrom resolution. The triclinic crystals are in the space group P1, with the unit cell dimensions of a = 8.606(3) angstrom, b = 22.168(7) angstrom, c = 8.448(2) angstrom, alpha = 97.56(3) degrees, beta = 95.97(2) degrees, gamma = 87.94(3) degrees, Z = 2. The structure was solved by direct methods and refined by the full-matrix least-squares method to a final R value of 0.065 with 3405 (Inet greater than 2.0 sigma (Inet] observed reflections using the NRCVAX software package. The crystal lattice includes 2 independent steffimycin, 3 water and one 2-methyl-2,4-pentanediol molecules. The conformation of steffimycin is grossly similar to other anthracycline antibiotics including daunorubicin. The crystal packing interactions of steffimycin suggest a preferred stacking of the aglycone chromophore of the antibiotic which resembles the intercalative interactions seen in the daunorubicin-d(CGTACG) (Wang et al., Biochemistry 26, 1152 (1987] and nogalamycin-d(CGT(pS)ACG) (Liaw et al., Biochemistry 28, 9913 (1989] complexes. The atomic coordinates data from these complexes were used to model the intercalative binding of steffimycin to DNA. The models were then stereochemically idealized by the constraint refinement program NUCLSQ. Subsequently XPLOR software package was used for energy minimization of these models in vacuo. The model building studies suggest that steffimycin has a higher CpG base sequence specificity over the TpA step, similar to that of daunorubicin and nogalamycin.
Recent advances in computational methods have made it possible to calculate the wave functions for a wide variety of simple actinide complexes. Equally important is the ability to analyze the information contained therein and produce a chemically meaningful understanding of the electronic structure. Yet the performance of the most common wave function analyses for the calculation of atomic charge and bond order has not been thoroughly investigated for actinide systems. This is particularly relevant because the calculation of charge and bond order even in transition metal complexes is known to be fraught with difficulty. Here we use Mulliken, Lowdin, natural population analysis, atoms-in-molecules (AIM), and fuzzy atom techniques to determine the charges and bond orders of UO(2)(2+), PuO(2)(2+), UO(2), UO(2)Cl(4)(2-), UO(2)(CO)(5)(2+), UO(2)(CO)(4)(2+), UO(2)(CN)(5)(3-), UO(2)(CN)(4)(2-), UO(2)(OH)(5)(3-), and UO(2)(OH)(4)(2-). This series exhibits a clear experimental and computational trend in bond lengths and vibrational frequencies. The results indicate that Mulliken and Lowdin populations and bond orders are unreliable for the actinyls. Natural population analysis performs well after modification of the partitioning of atomic orbitals to include the 6d in the valence space. The AIM topological partitioning is insensitive to the electron donating ability of the equatorial ligands and the relative atomic volume of the formally U(VI) center is counterintuitively larger than that of O(2-) in the UO(2)(2+) core. Lastly, the calibrated fuzzy atom method yields reasonable bond orders for the actinyls at significantly reduced computational cost relative to the AIM analysis.
Ruthenium benzylidene metathesis catalysts react with 2,3-dicarbomethoxymethylene-cyclopropane, eliminating styrene and dimethyl fumarate, and producing the first terminal ruthenium carbide complexes. The products are diamagnetic, air-stable, and moderately soluble in hydrocarbon solvents. An X-ray study of Ru(C:)Cl2(P(C6H11)3) (1,3-dimesityl-4,5-dihydroimidazol-2-ylidene) shows a Ru-C distance of 1.650(2) A, consistent with the presence of a very short Ru-C triple bond.
The atomic scale oxidation of the alpha-SiC(0001)-(3 x 3) surface is investigated by atom-resolved scanning tunneling microscopy, core level synchrotron radiation based photoemission spectroscopy, and infrared absorption spectroscopy. The results reveal that the initial oxidation takes place through the relaxation of lower layers, away from the surface dangling bond, in sharp contrast to silicon oxidation.
The two tetradentate ligands H(2)L and H(2)L(Me) afford the slightly distorted square-planar low-spin Ni(II) complexes 1 and 2, which comprise two coordinated phenolate groups. Complex 1 has been electrochemically oxidized into 1(+), which contains a coordinated phenoxyl radical, with a contribution from the nickel orbital. In the presence of pyridine, 1(+) is converted into 1(Py) (+), an octahedral phenolate nickel(III) complex with two pyridines axially coordinated: An intramolecular electron transfer (valence tautomerism) is promoted by the geometrical changes, from square planar to octahedral, around the metal center. The tetradentate ligand H(2)L(Me), in the presence of pyridine, and the hexadentate ligand H(2)L(Py) in CH(2)Cl(2) afford, respectively, the octahedral high-spin Ni(II) complexes 2(Py) and 3, which involve two equatorial phenolates and two axially coordinated pyridines. At 100 K, the one-electron-oxidized product 2(Py) (+) comprises a phenoxyl radical ferromagnetically coupled to the high-spin Ni(II) ion, with large zero-field splitting parameters, while 3(+) involves a phenoxyl radical antiferromagnetically coupled to the high-spin Ni(II) ion.
Ionspray (IS) and fast atom bombardment (FAB) positive ionization mass spectrometry (MS) of 1 : 1 beta-cyclodextrin (beta-CD)-melatonin (MLT) host-guest complex allowed the detection of gaseous protonated 1 : 1 beta-CD-MLT. Tandem MS collision-induced dissociation (CID) of such protonated 1 : 1 beta-CD-MLT species showed the proton (charge) to be retained to a significant extent by the host and by its cage fragmentation products, in spite of the higher proton affinity of MLT with respect to that of beta-CD. This requires an endothermic guest-to-host proton transfer to occur within the gaseous association. Collisional activation could be accounted for by the promotion of such an endothermic process; however, the proton affinity decrease of the guest determined by the loss of the elements of acetamide, which is a dominant MS dissociation reaction of pure protonated MLT, could also provide a rationale for such an endothermic guest-to-host proton transfer. This proposal parallels the reaction scheme we had previously formulated for the analogous MS and tandem MS behaviour of 1 : 1 beta-CD-5-methoxytryptamine inclusion complex with the protonated 5-methoxytryptamine guest undergoing deamination.
Several tripodal diimine ligands, tris(2-(2-thiazolyl)methyliminoethyl)amine, 2-Tatren, tris(2-(4-(5-methyl)imidazolyl)methyliminoethyl)amine, 5-Me-4-Imtren, tris(2-(4-imidazolyl)methyliminoethyl)amine, 4-Imtren, tris(2-(2-imidazolyl)methyliminoethyl)amine, 2-Imtren, and their Mg(2+) complexes were prepared and characterized. X-ray diffraction studies show that the Mg(2+) ions are six-coordinate, with three acyclic imine N atoms and three imidazolyl or thiazolyl N atoms coordinated with the general formula [Mg(L)](ClO(4))(2) (L=4-Imtren (1), 2-Imtren (2), 2-Tatren (3), and 5-Me-4-Imtren (4)). These complexes are chiral with both Delta and Lambda isomers present in the unit cell. (1)H NMR titrations reveal that complexes also form in solution and that the chirality is maintained. Variable temperature (1)H NMR reveals that the Delta and Lambda isomers interconvert in the intermediate to slow time scale. The interconversion rate slows with increasing pK(a) of the ligand heterocycle, suggesting that interconversion proceeds through a partially dissociated state. These complexes undergo trans-metallation by Zn(2+), indicating that their ligands can be released in a kinetically facile manner to form more stable metal ion complexes.
The oxygen-atom-transfer (OAT) reactivity of [LiPrMoO2(OPh)] (1, LiPr=hydrotris(3-isopropylpyrazol-1-yl)borate) with the tertiary phosphines PEt3 and PPh2Me in acetonitrile was investigated. The first step, [LiPrMoO2(OPh)]+PR3-->[LiPrMoO(OPh)(OPR3)], follows a second-order rate law with an associative transition state (PEt3, DeltaH not equal=48.4 (+/-1.9) kJ mol-1, DeltaS not equal=-149.2 (+/-6.4) J mol-1 K-1, DeltaG not equal=92.9 kJ mol-1; PPh2Me, DeltaH not equal=73.4 (+/-3.7) kJ mol-1, DeltaS not equal=-71.9 (+/-2.3) J mol-1 K-1, DeltaG not equal=94.8 kJ mol-1). With PMe3 as a model substrate, the geometry and the free energy of the transition state (TS) for the formation of the phosphine oxide-coordinated intermediate were calculated. The latter, 95 kJ mol-1, is in good agreement with the experimental values. An unexpectedly large O-P-C angle calculated for the TS suggests that there is significant O-nucleophilic attack on the P--C sigma* in addition to the expected nucleophilic attack of the P on the Mo==O pi*. The second step of the reaction, that is, the exchange of the coordinated phosphine oxide with acetonitrile, [LiPrMoO(OPh)(OPR3)]+MeCN-->[LiPrMoO(OPh)(MeCN)]+OPR3, follows a first-order rate law in MeCN. A dissociative interchange (Id) mechanism, with activation parameters of DeltaH not equal=93.5 (+/-0.9) kJ mol-1, DeltaS not equal=18.2 (+/-3.3) J mol-1 K-1, DeltaG not equal=88.1 kJ mol-1 and DeltaH not equal=97.9 (+/-3.4) kJ mol-1, DeltaS not equal=47.3 (+/-11.8) J mol-1 K-1, DeltaG not equal=83.8 kJ mol-1, for [LiPrMoO(OPh)(OPEt3)] (2 a) and [LiPrMoO(OPh)(OPPh2Me)] (2 b), respectively, is consistent with the experimental data. Although gas-phase calculations indicate that the Mo--OPMe3 bond is stronger than the Mo--NCMe bond, solvation provides the driving force for the release of the phosphine oxide and formation of [LiPrMoO(OPh)(MeCN)] (3).
The vibrational spectra of Ag(3) and Ag(4) are recorded in the far-infrared between 100 and 220 cm(-1) using multiple photon dissociation spectroscopy of their complexes with Ar atoms. For Ag(3)-Ar two IR active bands are found at 113 and 183 cm(-1), for Ag(4)-Ar one band at 163 cm(-1) and very weak IR activity at 193 cm(-1) are observed. This, together with recent theoretical studies, allows for a reassignment of the controversial vibrational data reported earlier for the bare Ag(3) cluster. The influence of the number of Ar atoms in the complexes on the frequency of the IR active modes is found to be minor. However, the low-frequency IR-active band of Ag(3) shifts with increasing Ar coverage from 113 cm(-1) for Ag(3)-Ar to about 120 cm(-1) for Ag(3)-Ar(4), the value known for Ag(3) embedded in rare gas matrices.
We have used x-ray crystallography to determine the structures of sperm whale myoglobin (Mb) in four different ligation states (unligated, ferric aquomet, oxygenated, and carbonmonoxygenated) to a resolution of better than 1.2 A. Data collection and analysis were performed in as much the same way as possible to reduce model bias in differences between structures. The structural differences among the ligation states are much smaller than previously estimated, with differences of <0.25 A root-mean-square deviation among all atoms. One structural parameter previously thought to vary among the ligation states, the proximal histidine (His-93) azimuthal angle, is nearly identical in all the ferrous complexes, although the tilt of the proximal histidine is different in the unligated form. There are significant differences, however, in the heme geometry, in the position of the heme in the pocket, and in the distal histidine (His-64) conformations. In the CO complex the majority conformation of ligand is at an angle of 18 +/- 3 degrees with respect to the heme plane, with a geometry similar to that seen in encumbered model compounds; this angle is significantly smaller than reported previously by crystallographic studies on monoclinic Mb crystals, but still significantly larger than observed by photoselection. The distal histidine in unligated Mb and in the dioxygenated complex is best described as having two conformations. Two similar conformations are observed in MbCO, in addition to another conformation that has been seen previously in low-pH structures where His-64 is doubly protonated. We suggest that these conformations of the distal histidine correspond to the different conformational substates of MbCO and MbO(2) seen in vibrational spectra. Full-matrix refinement provides uncertainty estimates of important structural parameters. Anisotropic refinement yields information about correlated disorder of atoms; we find that the proximal (F) helix and heme move approximately as rigid bodies, but that the distal (E) helix does not.
This article describes recent advances in the use of copper complexes in mediating atom transfer radical cyclisation reactions (ATRC). Recent developments have included the design of activated complexes which mediate the cyclisation of tri-, di-, and mono-halo derived substrates at ambient temperatures. Using this methodology, cyclisation to give a variety of ring sizes (4-18 membered rings) has been demonstrated. In addition tandem and radical-polar crossover reactions have also been developed. The design of solid supported and perfluorous complexes that mediate cyclisations may make this approach to the synthesis of rings more attractive towards industrial applications.
Synthesis of the tricoordinated alanyl-containing iron complex (tmp)(2)Al-Fe(cp)(CO)(2)] (1) (tmp = 2,2,6,6-tetramethylpiperidino) has been achieved in a straightforward salt elimination reaction of (tmp)(2)AlBr with Na[(cp)Fe(CO)(2)]. 1 crystallizes in the triclinic space group P&onemacr; (a = 8.347(4) Å, b = 10.044(5) Å, c = 15.087(8) Å, alpha = 94.01(1) degrees, beta = 91.18(1) degrees, gamma = 102.50(1) degrees ) and is an unassociated monomer with an Al-Fe bond length of 2.450(1) Å.