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PubMed1995

Rates of decomposition of ribose and other sugars: implications for chemical evolution.

The existence of the RNA world, in which RNA acted as a catalyst as well as an informational macromolecule, assumes a large prebiotic source of ribose or the existence of pre-RNA molecules with backbones different from ribose-phosphate. The generally accepted prebiotic synthesis of ribose, the formose reaction, yields numerous sugars without any selectivity. Even if there were a selective synthesis of ribose, there is still the problem of stability. Sugars are known to be unstable in strong acid or base, but there are few data for neutral solutions. Therefore, we have measured the rate of decomposition of ribose between pH 4 and pH 8 from 40 degrees C to 120 degrees C. The ribose half-lives are very short (73 min at pH 7.0 and 100 degrees C and 44 years at pH 7.0 and 0 degrees C). The other aldopentoses and aldohexoses have half-lives within an order of magnitude of these values, as do 2-deoxyribose, ribose 5-phosphate, and ribose 2,4-bisphosphate. These results suggest that the backbone of the first genetic material could not have contained ribose or other sugars because of their instability.

Biological Evolution↗
PubMed2004

Chemical evolution of Mg isotopes versus the time variation of the fine structure constant.

We show that the synthesis of (25,26)Mg at the base of the convective envelope in low-metallicity asymptotic giant branch stars can produce the isotopic ratios needed to explain the low-z subset (with z<1.8) of the many-multiplet data from quasar absorption systems without invoking a time variation of the fine structure constant. This is supported by observations of high abundances of the neutron-rich Mg isotopes in metal-poor globular-cluster stars. We conclude that the quasar absorption spectra may be providing interesting information on the nucleosynthetic history of such systems.

Journal Article↗
PubMed1978

Immunoglobulin evolution: chemical study of clawed toad (Xenopus laevis) heavy and light chains.

NH2 terminal amino acid sequence determinations of clawed toad (Xenopus laevis) immunoglobulins indicate that approximately 30% of the heavy chains and less than 5% of the light chains have unblocked NH2 termini. The major amino acid sequence of the X. laevis 7S immunoglobulin heavy chains is the same as that of the 19S immunoglobulin heavy chains. Thus in the synthesis of the heavy chains, the VH genes coding for unblocked heavy chains can associate with CH genes of both the 19S and 7S classes. This association is particularly important in amphibians because, in contrast to mammals and birds, the majority of amphibian antibody-producing cells synthesize both 19S and 7S immunoglobulins and do not participate in the 'genetic switch' characteristic of lymphocyte differentiation in higher organisms. In X. laevis, the major amino acid sequence at the first twenty-four positions of the unblocked heavy chains shows approximately 54% difference from the prototype amino acid sequence of the mammalian VHIII subgroup. Thus, the VHIII gene(s) must have started to appear after the evolutionary divergence of the common ancestor of mammals and birds from the amphibian line. The amino acid composition of the X. Laevis 7S immunoglobulin heavy chains differs from that of its 19S immunoglobulins as well as those of human IgG and IgA. These data support the concepts (a) that amphibian 7S and 19S immunoglobins belong to distinct classes and (b) that amphibian 7S immunoglobulin does not resemble mammalian IgG or IgA.

Amino Acid Sequence↗
PubMed1997

Planetary nebulae: understanding the physical and chemical evolution of dying stars.

Planetary nebulae are one of the few classes of celestial objects that are active in every part of the electromagnetic spectrum. These fluorescing and often dusty expanding gaseous envelopes were recently found to be quite complex in their dynamics and morphology, but refined theoretical models can account for these discoveries. Great progress was also made in understanding the mechanisms that shape the nebulae and the spectra of their central stars. In addition, applications for planetary nebulae have been worked out; for example, they have been used as standard candles for long-range distances and as tracers of the enigmatic dark matter.

Astronomical Phenomena↗
PubMed1977

Early chemical evolution of nucleic acids: a theoretical model.

Recent experimental work suggests a possible cyclical pathway for early prebiotic oligonucleotide formation that involves (i) dry-state (nontemplate) synthesis of random copolymers with mixed 2',5' and 3',5' bonds, (ii) passage of these oligomers into solution at low temperatures, and (iii) a preferential hydrolysis of the 2',5' bond in any short helices that have formed. This early system could have selected for complementary sequences that were largely 3',5'-linked, but may not have selected efficiently for a single enantiomer of ribose.

Cold Temperature↗
PubMedDate not supplied

Chemical evolution.

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Biochemical Phenomena↗
PubMed1971

Chemical evolution.

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Biochemical Phenomena↗
PubMed2003

HSAB principle applied to the time evolution of chemical reactions.

Time evolution of various reactivity parameters such as electronegativity, hardness, and polarizability associated with a collision process between a proton and an X- atom/ion (X = He, Li(+), Be(2+), B(3+), C(4+)) in its ground ((1)S) and excited((1)P,(1)D,(1)F) electronic states as well as various complexions of a two-state ensemble is studied using time-dependent and excited-state density functional theory. This collision process may be considered to be a model mimicking the actual chemical reaction between an X-atom/ion and a proton to give rise to an XH(+) molecule. A favorable dynamical process is characterized by maximum hardness and minimum polarizability values according to the dynamical variants of the principles of maximum hardness and minimum polarizability. An electronic excitation or an increase in the excited-state contribution in a two-state ensemble makes the system softer and more polarizable, and the proton, being a hard acid, gradually prefers less to interact with X as has been discerned through the drop in maximum hardness value and the increase in the minimum polarizability value when the actual chemical process occurs. Among the noble gas elements, Xe is the most reactive. During the reaction: H(2) + H(+) --> H(3)(+) hardness maximizes and polarizability minimizes and H(2) is more reactive in its excited state. Regioselectivity of proton attack in the O-site of CO is clearly delineated wherein HOC(+) may eventually rearrange itself to go to the thermodynamically more stable HCO(+).

Journal Article↗