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PubMed2003

Alignment and phylogenetic analysis of beta-fibrinogen intron 7 sequences among avian orders reveal conserved regions within the intron.

We sequenced beta-fibrinogen intron 7 (beta-fibint 7) from 28 species of birds, representing 18 families in nine orders. Although the antiquity of the avian orders is estimated to be 55 to 90 Myr, and numerous indels have accrued among diverging lineages, the intron sequences were not difficult to align. However, alignment of avian sequences with mammal or snake sequences was difficult, and the residual phylogenetic signal was weak. beta-fibint 7 is an AT-rich intron, and its base composition varies little over the diversity of birds represented by our sample. Alignment of these anciently diverged sequences reveals at least five clusters of conserved nucleotides; at least two clusters appear to be in excess of the minimal set usually associated with intron excision, but their functions are unknown. Two equally most-parsimonious (MP) trees were found when indels were not included in the phylogenetic analysis, and six such trees were found when indels were included. The Neighbor-Joining and maximum-likelihood trees were identical to each other and to one of the MP trees in each MP analysis. Indels, as well as nucleotide substitutions, are phylogenetically informative, and bootstrap support exceeded 90% for 21 of 24 inferred nodes when indels were included in the MP analysis. All traditional orders represented by two or more species appear monophyletic. Relationships among avian orders are strongly supported with the exception of an inferred sister-group relationship between Caprimulgiformes and Columbiformes. A relatively close relationship between Piciformes and Passeriformes is inferred, at odds with earlier DNA-DNA hybridization studies but consistent with traditional classifications. Among Passeriformes, the traditional perspective of a sister-group relationship of suboscines and oscines is supported, as is the subsequent split of the oscines into a lineage representative of the Corvida before the diversification of the Passerida. The four species of owls divide into two strongly supported clades, corresponding to the widely accepted bifurcation of owls into two families, Tytonidae and Strigidae. A sister-group relationship between gallinaceous birds and waterfowl, the Galloanserae, is also strongly supported.

Animals↗
PubMed2000

Mitochondrial genomic rearrangements in songbirds.

The organization of the mitochondrial genome is generally very conserved among vertebrates. Because of this, examination of the rare rearrangements which do occur has been suggested as offering a powerful alternative to phylogenetic analyses of mitochondrial DNA sequences. Here, we report on an avian mitochondrial rearrangement in a group of oscine passerines (warblers of the genus Phylloscopus). This rearrangement is identical to the mitochondrial organization recently identified in representatives of four orders of birds, including subsoscine Passeriformes. The rearrangement involves the movement of three genes (tRNA(Pro), NADH6, and tRNA(Glu)) from their normal position in birds between tRNA(Thr) and the control region (CR), to a new location between the CR and a novel, supposedly noncoding (NC), region. Our results suggest that this derived arrangement cannot be used to distinguish between suboscine and oscine passerines, as it has multiple origins both within Passeriformes and within birds as a whole. We found short stretches of DNA with high degrees of similarity between the CR and each NC region, respectively, all of which could be located in the same area of the CR. This suggests that the CR and the NC region are homologous and that the mechanism behind this mitochondrial rearrangement is a tandem duplication followed by multiple deletions. However, the similarities between the control and NC regions of each species were less pronounced than those between the control or NC regions from the different species, supporting the hypothesis of a single basal rearrangement in the Phylloscopus warblers.

Animals↗
PubMed1996

Mycobacteriosis caused by Mycobacterium genavense in birds kept in a zoo: 11-year survey.

We report on a disease in 27 birds (1 bird belonging to the order Coraciiformes, 3 to Piciformes, 4 to Galliformes, 7 to Psittaciformes, and 12 to Passeriformes) caused by fastidious mycobacteria. All birds were caged at the Antwerp Zoo and died suddenly between 1983 and 1994. Seventeen birds had no previous signs of disease, and 10 birds showed emaciation. Gross necropsy findings were generally nonspecific, but all the birds were smear positive for acid-fast bacilli (AFB). Histopathologic evaluation performed on 14 birds revealed predominantly intracellular AFB. Extracellular AFB were more abundant in advanced lesions, especially in necrotic areas. In the intestine the mucosal area was generally heavily infiltrated, suggesting an intestinal origin of the infection. There was extensive invasion of the lungs in most birds. In 11 birds sparse growth was obtained after at least 6 months of incubation on Löwenstein-Jensen medium or on Ogawa medium supplemented with mycobactin. Subculture was unsuccessful in all instances. The 16S rRNA gene sequence of the cultured organisms or tissues from seven birds revealed the characteristic signature sequence for Mycobacterium genavense. Direct bird-to-bird transmission in the zoo was unlikely, and the pathogenicity of M. genavense in birds seems to be limited. The source of M. genavense in nature and the epidemiology of the disease in birds remain obscure. As suspected for human cases of M. genavense infection, an oral route of infection has been suggested, and contaminated local water distribution systems may have been the source of the infection. Our study confirms that infections caused by M. genavense should be suspected in birds (especially in Passeriformes and Psittaciformes orders) that die suddenly without previous symptoms and that have AFB in tissues that are difficult to grow on conventional media.

Animals↗
PubMed1986

Semen collection and spermatozoa characteristics in budgerigars (Melopsittacus undulatus).

Semen samples were obtained from budgerigars by applying gentle pressure to both sides of the cloaca. The semen appeared to be stored in the seminal glomera, two structures on either side of the proctodeum. These structures have been described before in Passeriformes. The spermatozoon in budgerigars is similar to the spermatozoon of the domestic fowl, but differs from the spermatozoon of Passeriformes.

Animals↗
PubMedDate not supplied

Observations on some avian Coccidia (Apicomplexa: Eimeriidae) in Amazonian Brazil.

Oocysts of Eimeria porphyrulae n.sp. are described in faeces of Porphyrula martinica (Aves: Gruiformes: Rallidae). They are ellipsoidal to oval, 22.4 x 17.7 (20.0-23.7 x 16.2-18.7) microns, shape-index (length/width) 1.3. Oocyst wall about 1.25 microns thick, colourless, with two layers: inner one prominently striated. Micropyle and sub-micropylar granule present: no oocyst residuum. Sporocysts 17.5 x 9.0 (17.0-19.0 x 8.0-10.0) microns, shape-index 1.9, with inconspicuous Stieda/sub-Stieda bodies. Sporocyst residuum of scattered granules, sometimes a compact mass: sporozoites with two refractile bodies. Eimeria crypturelli n.sp. is described in faeces of Crypturellus soui (Tinamiformes: Tinamidae). Oocysts ellipsoidal-oval, 20.75 x 14.5 (17.5-25.0 x 11.25-21.25) microns, shape-index 1.4. Oocyst wall about 1.25 microns thick and bi-layered: inner layer faintly striated. Micropyle present, with oocyst residuum immediately below: single polar body rarely present. Sporocysts 13.0 x 7.5 (12.5-13.75 x 7.5-8.1) microns, shape-index 1.7, with a Stieda body but seemingly no sub-Stieda. Sporocyst residuum compact: sporozoites with two refractile bodies. Isospora cacici n.sp. is recorded from faeces of Cacicus cela cela (Passeriformes: Icteridae). Oocysts subspherical-spherical, 26.5 x 23.7 (22.5-27.5 x 20.0-26.2) microns, shape-index 1.1. Wall a single, colourless layer about 1.5 microns thick. No micropyle or oocyst residuum: 1-2 polar bodies. Sporocysts ellipsoidal, 17.7 x 12.5 (17.5-18.75 x 11.25-13.75) microns, shape-index 1.4, with pronounced Stieda/sub-Stieda bodies: residuum compact and sporozoites with two refractile bodies. Isospora thraupis n.sp. is described from faeces of Thraupis palmarum melanoptera (Passeriformes: Thraupidae).(ABSTRACT TRUNCATED AT 250 WORDS)

Animals↗
PubMed1999

[Polyomavirus infections in exotic birds in Switzerland].

Polyomavirus infections in budgerigars, in other parrots as well as in passeriformes have been described in many countries, but not in Switzerland so far. This paper reports on cases of polyomavirus infections in three different bird collections in Switzerland. The first outbreak occurred in a mixed collection of passeriformes, the second in a collection of parrotlets (Genus Forpus), and the third in a large groups of parrots (Psittaciformes), of which only one recently acquired Kea (Nestor notabilis) was affected. The clinical symptoms, gross necropsy changes and histopathologic findings are described. The presence of avian polyomavirus was confirmed by the polymerase chain reaction (PCR).

Animals↗
PubMedDate not supplied

[New species of the Rhinonyssid mites (Gamasina: Rhinonyssidae) from birds of Russia and neighboring countries].

Four new species of the nasal mite family Rhinonyssidae collected in different regions of the former USSR are described: Neonyssus (Otocorinyssus) alaudae sp. n. from Alauda arvensis L. (Alaudidae, Passeriformes) from Turkmenistan; Rhinonyssus clangulae sp. n. from Clangula hyemalis (L.) (Anatidae, Anseriformes) from Yakutia; R. marilae sp. n. from Aythya marilae L. (Anatidae, Anseriformes) from the Russian Far East; Locustellonyssus sibiricus sp. n. from Locustella certhiola (Pall.) (Sylviidae, Passeriformes) from Siberia.

Animals↗
PubMed1991

[The occurrence of the parasite Collyriclum faba (Bremser in Schmalz, 1831) in wild birds in Switzerland].

The infection of our indigenous wild birds by the parasite Collyriclum faba represents a rare event. The adult trematodes reside in the subcutaneous tissue of the host, where prominent cysts can be found. In summer 1988, two cases were diagnosed, in a house sparrow (Passer domesticus) and in a goldcrest (Regulus regulus), which led us to a description of this unusual parasitic disease, whose cycle still remains unknown, and to a review of the prior known appearances in Switzerland. In the time between 1960 and 1989, a total of 2070 wild birds were examined in our Institute. In only four cases could an infection with C. faba be demonstrated. All of the affected birds belonged to the order of the Passeriformes. The occurrence rate of infestation among all wild birds was of 0.2%, and of 0.6% within the order of the Passeriformes. On the basis of this infection rate in our samples, we conclude that the rate of C. faba infections in wild birds of Switzerland is extremely low.

Animals↗
PubMed1987

[Comparative histology, histochemistry and innervation of striated muscle fibers of the greater pectoralis muscle and supracoracoid muscle in birds].

The morphology of the pectoralis major muscle and the supracoracoideus muscle was compared in three Galliformes and five Passeriformes, in relation to partial behavioral characteristics. In all species, two fibres types are observed. The frequencies of these fibres are different, especially between Galliformes and Passeriformes, but also between Coturnix and other Galliformes. All fibres show phasic innervation. A relation of the extent between synaptic gutters and muscle activity is suggested.

Animals↗
PubMed1986

[Comparative histology, histochemistry and innervation of the striated muscle fibers of the peroneus longus muscle].

The morphology of the peroneus longus muscle was compared in three Galliformes and five Passeriformes in relation to partial behavioral characteristics. In the quail two fibre types are found, while the muscle of the other species is composed of three fibre types. The frequencies of these fibres are different, especially between Galliformes and Passeriformes. The peroneus longus muscle in the quail is innervated only from the phasic system. The other species show phasic and tonic innervation. There is a correlation between the muscle fibre calibre and the extent of the synaptic gutter.

Animals↗
PubMed2006

Redescriptions of Monosertum parinum (Dujardin, 1845) and M. mariae (Mettrick, 1958) n. comb. from European passerine birds, with an amended generic diagnosis of Monosertum Bona, 1994 (Cestoda: Dilepididae).

The type-species of Monosertum Bona, 1994, M. parinum (Dujardin, 1845), is redescribed on the basis of the neotype designated by Bona (1994). M. mariae (Mettrick, 1958) n. comb. (originally Paricterotaenia mariae Mettrick, 1958) is recorded and redescribed from Erithacus rubecula L. (Passeriformes: Turdidae) in the Kaliningradskaya Oblast', Russia (new geographical record). An amended generic diagnosis of Monosertum is presented.

Animals↗
PubMed2006

Unusual finding of Trichobilharzia sp. in Motacilla alba in the Czech Republic.

Adult male worms of Trichobilharzia sp. recovered from a pied wagtail (Motacilla alba) in the Czech Republic were found to belong to a new species of the genus. The finding of Trichobilharzia sp. in a passeriform bird in Europe represents an important discovery, as only anseriform birds have thus far been reported as final hosts of the European Trichobilharzia species.

Animals↗
PubMed2005

Small clades at the periphery of passerine morphological space.

Among passerine birds (order Passeriformes), tribe- to family-level clades with five or fewer species are more frequent than one would expect from a homogeneous speciation and extinction process. Previous analyses also suggested that small clades tend to be marginal geographically and/or ecologically. In this study, I use principal component (PC) scores based on eight log-transformed measurements of the wing, tail, leg, and beak to test the hypothesis that small clades (<or=5 species) occupy peripheral positions in morphological space. Species in smaller clades exhibited higher absolute deviations and greater standard deviations on PC axes 4, 6, and 7, reflecting peripheral positions associated with relatively long toes, sometimes in contrast with short legs, and relatively small beaks compared with other birds. These extreme morphological characters are related to foraging on hard substrates, such as rock or bark, or feeding from perched positions or in dense vegetation. The implication that these small clades are protected from extinction at the periphery of morphological and, by inference, ecological space suggests that more detailed studies of the evolution and ecology of species in small clades should be a priority.

Adaptation, Physiological↗
PubMed2004

Novel chromatic and structural biomarkers of diet in carotenoid-bearing plumage.

Previous attempts to establish a link between carotenoid-based plumage reflectance and diet have focused on spectral features within the human visible range (400-700 nm), particularly on the longer wavelengths (550-700 nm) that make these plumages appear yellow, orange or red. However, carotenoid reflectance spectra are intrinsically bimodal, with a less prominent but highly variable secondary reflectance peak at near-ultraviolet (UV; 320-400 nm) wavelengths visible to most birds but not to normal humans. Analysis of physical reflectance spectra of carotenoid-bearing plumages among trophically diverse tanagers (Thraupini, Emberizinae, Passeriformes) indicated that both the absolute and relative (to long visible wavelengths) amounts of short waveband (including UV) reflectance were lower in more frugivorous species. Striking modifications to the branched structure of feathers increased with frugivory. These associations were independent of phylogenetic relatedness, or other physical (specimen age, number of carotenoid-bearing patches) or ecological (body size, elevation) variables. By comparison, reflectance at longer visible wavelengths ('redness') was not consistently associated with diet. The reflectance patterns that distinguished frugivores should be more apparent to UV-sensitive birds than to UV-blind humans, but humans can perceive the higher plumage gloss produced by modified gross feather structure. Basic aspects of carotenoid chemistry suggest that increases in pigment concentration and feather dimensions reduce short waveband reflectance by the plumages of frugivores.

Animals↗
PubMed2006

Avian diversity and West Nile virus: testing associations between biodiversity and infectious disease risk.

The emergence of several high profile infectious diseases in recent years has focused attention on our need to understand the ecological factors contributing to the spread of infectious diseases. West Nile virus (WNV) is a mosquito-borne zoonotic disease that was first detected in the United States in 1999. The factors accounting for variation in the prevalence of WNV are poorly understood, but recentideas suggesting links between high biodiversity and reduced vector-borne disease risk may help account for distribution patterns of this disease. Since wild birds are the primary reservoir hosts for WNV, we tested associations between passerine (Passeriform) bird diversity, non-passerine (all other orders) bird diversity and virus infection rates in mosquitoes and humans to examine the extent to which bird diversity is associated with WNV infection risk. We found t h at non-passerine species richness (number of non-passerine species) was significantly negatively correlated with both mosquito and human infection rates, whereas there was no significant association between passerine species richness and any measure of infection risk. Our findings suggest that non-passerine diversity may play a role in dampening WNV amplification rates in mosquitoes, minimizing human disease risk.

Animals↗
PubMed2005

Vertebrate host specificity of two avian malaria parasites of the subgenus Novyella: Plasmodium nucleophilum and Plasmodium vaughani.

The susceptibility of wild-caught European passeriform birds to naturally isolated malaria parasites, Plasmodium (Novyella) nucleophilum and Plasmodium (Novyella) vaughani, was studied by means of intramuscular subinoculation of infected citrated blood. Plasmodium nucleophilum of the great tit, Parus major, was transmitted to 3 great tits, but 3 blackcaps (Sylvia atricapilla) were not susceptible. Plasmodium vaughani of the robin, Erithacus rubecula, was transmitted to 1 robin and 1 blackcap, but 1 dunnock, Prunella modularis, was not susceptible. The prepatent period was between 8 and 10 days in all experimental infections. Maximum experimental parasitemia (3.4% of red cells) was detected in great tits infected with P. nucleophilum 23 days postexposure. A light (<0.01%) transient parasitemia of P. vaughani developed in the robin and blackcap. This study is in accord with former experimental observations on host specificity of P. nucleophilum and P. vaughani, which are characterized by a wide, but selective, range of avian hosts. Two new host-parasite associations were recorded.

Animals↗