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PubMed1996

Efficiencies of different genes and different tree-building methods in recovering a known vertebrate phylogeny.

The relative efficiencies of different protein-coding genes of the mitochondrial genome and different tree-building methods in recovering a known vertebrate phylogeny (two whale species, cow, rat, mouse, opossum, chicken, frog, and three bony fish species) was evaluated. The tree-building methods examined were the neighbor joining (NJ), minimum evolution (ME), maximum parsimony (MP), and maximum likelihood (ML), and both nucleotide sequences and deduced amino acid sequences were analyzed. Generally speaking, amino acid sequences were better than nucleotide sequences in obtaining the true tree (topology) or trees close to the true tree. However, when only first and second codon positions data were used, nucleotide sequences produced reasonably good trees. Among the 13 genes examined, Nd5 produced the true tree in all tree-building methods or algorithms for both amino acid and nucleotide sequence data. Genes Cytb and Nd4 also produced the correct tree in most tree-building algorithms when amino acid sequence data were used. By contrast, Co2, Nd1, and Nd41 showed a poor performance. In general, large genes produced better results, and when the entire set of genes was used, all tree-building methods generated the true tree. In each tree-building method, several distance measures or algorithms were used, but all these distance measures or algorithms produced essentially the same results. The ME method, in which many different topologies are examined, was no better than the NJ method, which generates a single final tree. Similarly, an ML method, in which many topologies are examined, was no better than the ML star decomposition algorithm that generates a single final tree. In ML the best substitution model chosen by using the Akaike information criterion produced no better results than simpler substitution models. These results question the utility of the currently used optimization principles in phylogenetic construction. Relatively simple methods such as the NJ and ML star decomposition algorithms seem to produce as good results as those obtained by more sophisticated methods. The efficiencies of the NJ, ME, MP, and ML methods in obtaining the correct tree were nearly the same when amino acid sequence data were used. The most important factor in constructing reliable phylogenetic trees seems to be the number of amino acids or nucleotides used.

Algorithms↗

PubMed2001

Effects of irrigation deprivation during the harvest period on nonstructural carbohydrate and nitrogen contents of dormant, mature almond trees.

Effect of irrigation deprivation during the harvest period on the nonstructural carbohydrate (NC) content of dormant, mature, field-grown almond (Prunus dulcis (Mill.) D.A. Webb cv. Nonpareil) trees was studied. Roots, trunk, branches, spurs and stems of 12 trees were subsampled in February 1997, across a gradient of irrigation treatments (FI = fully irrigated, MS = moderately stressed and SS = severely stressed) to relate NC concentration to the degree of water stress experienced by individual trees during the previous (1996) harvest period. To assess the effect of water stress on whole-tree NC content, three dormant FI trees and three dormant SS trees were excavated on December 10, 1997, and dry weights and NC and N concentrations of the tree components were determined. Whole-tree biomass did not differ significantly between FI and SS trees, although SS trees tended to have less total dry weight. Although roots constituted just 13% of tree biomass, they stored 36 and 44% of tree NC and N contents, respectively. There were negative relationships between the seasonal minimum values of both midday (Psi(ms)) and predawn (Psi(pd)) stem water potentials during the harvest period and root NC content of dormant trees. Severe water stress during the harvest period resulted in a 26% reduction in NC content and a 50% reduction in biomass of current-year stems (> 5 cm in length) per tree. The reduction in NC content is consistent with the previously reported late season reductions in leaf function and persistence. The SS trees exhibited a reduction in NC content but not in N content per tree, indicating that late season accumulation of NC and N were uncoupled in trees subjected to severe harvest-period water stress.

Agriculture↗

PubMed2002

Changes in shoot allometry with increasing tree height in a tropical canopy species, Elateriospermum tapos.

Allometry of shoot extension units (hereafter termed "current shoots") was analyzed in a Malaysian canopy species, Elateriospermum tapos Bl. (Euphorbiaceae). Changes in current shoot allometry with increasing tree height were related to growth and maintenance of tree crowns. Total biomass, biomass allocation ratio of non-photosynthetic to photosynthetic organs, and wood density of current shoots were unrelated to tree height. However, shoot structure changed with tree height. Compared with short trees, tall trees produced current shoots of the same mass but with thicker and shorter stems. Current shoots with thin and long stems enhanced height growth in short trees, whereas in tall trees, thick and short current shoots may reduce mechanical and hydraulic stresses. Furthermore, compared with short trees, tall trees produced current shoots with more leaves of lower dry mass, smaller area, and smaller specific leaf area (SLA). Short trees adapted to low light flux density by reducing mutual shading with large leaves having a large SLA. In contrast, tall trees reduced mutual shading within a shoot by producing more small leaves in distal than in proximal parts of the shoot stem. The production of a large number of small leaves promoted light penetration into the dense crowns of tall trees. All of these characteristics suggest that the change in current shoot structure with increasing tree height is adaptive in E. tapos, enabling short trees to maximize height growth and tall trees to maximize light capture.

Biomass↗

PubMed2006

Carbohydrate transfer through root grafts to support shaded trees.

We investigated whether root grafts between lodgepole pine (Pinus contorta var. latifolia Dougl. ex. Loud.) trees can transfer sufficient carbohydrate reserves from a source tree to a grafted sink tree to affect the vigor of trees growing in a light-limited environment. Eleven plots were established in early spring and two grafted tree pairs and two independent non-grafted trees were selected at each plot. One tree in a grafted pair and one non-grafted tree were shaded at each plot, whereas the remaining trees were non-shaded during the experimental period. Shaded trees had significantly lower carbohydrate reserves and smaller crowns than non-shaded trees following one growing season. Grafted shaded trees had significantly higher root total nonstructural carbohydrate concentrations than non-grafted shaded trees, indicating that root grafts partially offset the effects of shading. Also, large root grafts transferred proportionately more carbohydrates to the shaded trees than small root grafts. Carbohydrates transferred through root grafts could allow grafted trees to persist under conditions where non-grafted trees would be removed by competition.

Biological Transport↗

PubMed2005

On the quality of tree-based protein classification.

MOTIVATION: Phylogenetic analysis of protein sequences is widely used in protein function classification and delineation of subfamilies within larger families. In addition, the recent increase in the number of protein sequence entries with controlled vocabulary terms describing function (e.g. the Gene Ontology) suggests that it may be possible to overlay these terms onto phylogenetic trees to automatically locate functional divergence events in protein family evolution. Phylogenetic analysis of large datasets requires fast algorithms; and even 'fast', approximate distance matrix-based phylogenetic algorithms are slow on large datasets since they involve calculating maximum likelihood estimates of pairwise evolutionary distances. There have been many attempts to classify protein sequences on the family and subfamily level without reconstructing phylogenetic trees, but using hierarchical clustering with simpler distance measures, which also produce trees or dendrograms. How can these trees be compared in their ability to accurately classify protein sequences? RESULTS: Given a 'reference classification' or 'group membership labels' for a set of related protein sequences as well as a tree describing their relationships (e.g. a phylogenetic tree), we propose a method for dividing the tree into monophyletic or paraphyletic groups so as to optimize the correspondence between the reference groups and the tree-derived groups. We call the achieved optimal correspondence the 'accuracy of a tree-based classification (TBC)', which measures the ability of a tree to separate proteins of similar function into monophyletic or paraphyletic groups. We apply this measure to compare classical NJ and UPGMA phylogenetic trees with the trees obtained from hierarchical clustering using different protein similarity measures. Our preliminary analysis on a set of expert-curated protein families and alignments suggests that there is no uniformly superior algorithm, and that simple protein similarity measures combined with hierarchical clustering produce trees with reasonable and often the most accurate TBC. We used our measure to help us to design TIPS, a tree-building algorithm, based on agglomerative clustering with a similarity measure derived from profile scoring. TIPS is comparable with phylogenetic algorithms in terms of classification accuracy and is much faster on large protein families. Due to its time scalability and acceptable accuracy, TIPS is being used in the large-scale PANTHER protein classification project. The trees produced by different algorithms for different protein families can be viewed at http://panther.appliedbiosystems.com/pub/tree_quality/trees.jsp. For every tree and every level of classification granularity we provide the optimal TBC along with the reference classification. AVAILABILITY: The script that evaluates the accuracy of TBC is available at http://panther.appliedbiosystems.com/pub/tree_quality/index.jsp

Algorithms↗

PubMed1995

Water deficits at anthesis reduce CO(2) assimilation and yield of lychee (Litchi chinensis Sonn.) trees.

Ten-year-old 'Tai So' lychee (Litchi chinensis Sonn.) trees growing on a sandy loam soil in subtropical South Africa (latitude 25 degrees S) were watered weekly (well-watered treatment) or droughted from late July until January (drought treatment). After 16 weeks, at which time the trees obtained most of their water from below 150 cm, average soil water content at 0 to 150 cm depth was 14.5 +/- 0.1% in the well-watered treatment and reached a minimum of 7.6% in the drought treatment. At Week 7, minimum leaf water potential (Psi(L)) in the morning and early afternoon declined to -2.6 and -2.8 MPa, respectively, in droughted trees compared with -1.5 and -2.2 MPa, respectively, in well-watered trees. From Week 9, stomatal conductance and net CO(2) assimilation rate ranged from 70 to 300 mmol m(-2) s(-1) and 3 to 13 micro mol CO(2) m(-2) s(-1), respectively, in well-watered trees. The corresponding values for droughted trees were 50 to 180 mmol m(-2) s(-1) and 2 to 6 micro mol CO(2) m(-2) s(-1). Five weeks after rewatering the droughted trees, gas exchange had not recovered to the rate in well-watered trees, although tree water status recovered within a week of rewatering. In the well-watered trees, water use (E(t)) was 26 +/- 1 mm week(-1) with evaporation (E(p)) of 20 to 70 mm week(-1) indicating a crop factor (k(c) = E(t)/E(p)) of 0.4 to 1.2. Before anthesis, tree water status did not affect extension growth of floral panicles or leafy shoots. In contrast, no vegetative shoots were initiated after fruit set in the droughted trees when Psi(L) in the morning declined to -2.5 MPa. Water deficits reduced initial fruit set by 30% and final fruit set by 70% as a result of fruit splitting (41.2 +/- 4.0% versus 10.0 +/- 1.3%). Water deficits did not alter the sigmoidal pattern of fruit growth, but reduced yield from 51.4 +/- 5.5 kg tree(-1) in well-watered trees to 7.4 +/- 3.3 kg tree(-1) in droughted trees.

Journal Article↗

PubMedDate not supplied

Environmental regulation of xylem sap flow and total conductance of Larix gmelinii trees in eastern Siberia.

Xylem sap flow and environmental variables were measured on seven consecutive midsummer days in a 130-year-old Larix gmelinii (Rupr.) Rupr. forest located 160 km south of Yakutsk in eastern Siberia, Russia (61 degrees N, 128 degrees E, 300 m asl). The site received 20 mm of rainfall during the 4 days before measurements, and soil samples indicated that the trees were well watered. The tree canopy was sparse with a one-sided leaf area index of 1.5 and a tree density of 1760 ha(-1). On a clear day when air temperature ranged from 9 to 29 degrees C, and maximum air saturation deficit was 3.4 kPa, daily xylem sap flux (F) among 13 trees varied by an order of magnitude from 7 l day(-1) for subcanopy trees (representing 55% of trees in the forest) to 67 l day(-1) for emergent trees (representing 18% of trees in the forest). However, when based on xylem sap flux density (F'), calculated by dividing F by projected tree crown area (a surrogate for the occupied ground area), there was only a fourfold range in variability among the 13 trees, from 1.0 to 4.4 mm day(-1). The calculation of F' also eliminated systematic and large differences in F among emergent, canopy and subcanopy trees. Stand-level F', estimated by combining half-hourly linear relationships between F and stem cross-sectional area with tree size distribution data, ranged between 1.8 +/- 0.4 (standard deviation) and 2.3 +/- 0.6 mm day(-1). These stand-level F' values are about 0.6-0.7 mm day(-1) (30%) larger than daily tree canopy transpiration rates calculated from forest energy balance and understory evaporation measurements. Maximum total tree conductance for water vapor transfer (G(tmax), including canopy and aerodynamic conductances), calculated from the ratio of F' and the above-canopy air saturation deficit (D) for the eight trees with continuous data sets, was 9.9 +/- 2.8 mm s(-1). This is equivalent to a leaf-scale maximum stomatal conductance (g(smax)) of 6.1 mm s(-1), when expressed on a one-sided leaf area basis, which is comparable to the published porometer data for Larix. Diurnal variation in total tree conductance (G(t)) was related to changes in the above-canopy visible irradiance (Q) and D. A saturating upper-boundary function for the relationship between G(t) and Q was defined as G(t) = G(tmax)(Q/[Q + Q(50)]), where Q(50) = 164 +/- 85 micro mol m(-2) s(-1) when G(t) = G(tmax)/2. Accounting for Q by excluding data for Q < Q(85) when G(t) was at least 85% of G(tmax), the upper limit for the relationship between G(t) and D was determined based on the function G(t) = (a + blnD)(2), where a and b are regression coefficients. The relationship between G(t) and D was curvilinear, indicating that there was a proportional decrease in G(t) with increasing D such that F was relatively constant throughout much of the day, even when D ranged between about 2 and 4 kPa, which may be interpreted as an adaption of the species to its continental climate. However, at given values of Q and D, G(t) was generally higher in the morning than in the afternoon. The additional environmental constraints on G(t) imposed by leaf nitrogen nutrition and afternoon water stress are discussed.

Journal Article↗

PubMed2001

Hydraulic and stomatal adjustment of Norway spruce trees to environmental stress.

A study of how the water conducting systems of 30-50-year-old Norway spruce (Picea abies (L.) Karst.) trees growing at three sites adjust to shade and waterlogging indicated that water relations characteristics varied with the life histories of the trees. Xylem was more efficient at conducting water and stomata were more sensitive to atmospheric evaporative demand in trees subjected to favorable growth conditions (control trees) than in trees growing in shade or waterlogged conditions. At the same soil water availability, shade-grown trees suffered more severely from water deficit than control trees. Under conditions of high atmospheric vapor pressure deficit, foliage of shade-grown trees exhibited low water potentials, as a result of low hydraulic conductance of the vascular system and inefficient stomatal control. Because of the increased internal resistance to water flow, more negative leaf water potentials (Psi(x)) must be reached to provide an adequate water supply to the foliage. It is concluded that dynamic water stress is one of the main causes of the continuing growth retardation in suppressed Norway spruce trees after their release from the overstory. Trees growing in waterlogged soil (bog-grown trees) were characterized by weak stomatal control, resulting in large water losses from the foliage. Although bog-grown trees exhibited uneconomical water use, they possessed mechanisms (e.g., osmotic adjustment) that allowed leaves to tolerate low Psi(x) while stomata remained open. Under conditions of sufficient soil water availability and moderate atmospheric vapor pressure deficit, soil-to-leaf conductance was highest in bog-grown trees (1.45 +/- 0.06 mmol m(-2) s(-1) MPa(-1)), followed by control and shade-grown trees (1.04 +/- 0.04 and 0.77 +/- 0.05 mmol m(-2) s(-1) MPa(-1), respectively). The lowest soil-to-leaf conductance (0.45 +/- 0.04 mmol m(-2) s(-1) MPa(-1)) was recorded in control trees at high atmospheric evaporative demand, and was probably caused by tracheid cavitation.

Environment↗

PubMed2005

Carbon budget for Scots pine trees: effects of size, competition and site fertility on growth allocation and production.

Time series of carbon fluxes in individual Scots pine (Pinus sylvestris L.) trees were constructed based on biomass measurements and information about component-specific turnover and respiration rates. Foliage, branch, stem sapwood, heartwood and bark components of aboveground biomass were measured in 117 trees sampled from 17 stands varying in age, density and site fertility. A subsample of 32 trees was measured for belowground biomass excluding fine roots. Biomass of fine roots was estimated from the results of an earlier study. Statistical models were constructed to predict dry mass (DW) of components from tree height and basal area, and time derivatives of these models were used to estimate biomass increments from height growth and basal area growth. Biomass growth (G) was estimated by adding estimated biomass turnover rates to increments, and gross photosynthetic production (P) was estimated by adding estimated component respiration rates to growth. The method, which predicts the time course of G, P and biomass increment in individual trees as functions of height growth and basal area growth, was applied to eight example trees representing different dominance positions and site fertilities. Estimated G and P of the example trees varied with competition, site fertility and tree height, reaching maximum values of 22 and 43 kg(DW) year(-1), respectively. The site types did not show marked differences in productivity of trees of the same height, although height growth was greater on the fertile site. The G:P ratio decreased with tree height from 65 to 45%. Growth allocation to needles and branches increased with increasing dominance, whereas growth allocation to the stem decreased. Growth allocation to branches decreased and growth allocation to coarse roots increased with increasing tree size. Trees at the poor site allocated 49% more to fine roots than trees at the fertile site. The belowground parts accounted for 25 to 55% of annual G, increasing with tree size and decreasing with site fertility. Annual G and P per unit needle mass varied over the ranges 1.9-2.4 and 3.5-4.0 kg(DW) kg(-1), respectively. The relationship between P and needle mass in the example trees was linear and relatively independent of competition, site fertility and age.

Biomass↗

PubMed2004

A decision tree--based method for the differential diagnosis of Aortic Stenosis from Mitral Regurgitation using heart sounds.

BACKGROUND: New technologies like echocardiography, color Doppler, CT, and MRI provide more direct and accurate evidence of heart disease than heart auscultation. However, these modalities are costly, large in size and operationally complex and therefore are not suitable for use in rural areas, in homecare and generally in primary healthcare set-ups. Furthermore the majority of internal medicine and cardiology training programs underestimate the value of cardiac auscultation and junior clinicians are not adequately trained in this field. Therefore efficient decision support systems would be very useful for supporting clinicians to make better heart sound diagnosis. In this study a rule-based method, based on decision trees, has been developed for differential diagnosis between "clear" Aortic Stenosis (AS) and "clear" Mitral Regurgitation (MR) using heart sounds. METHODS: For the purposes of our experiment we used a collection of 84 heart sound signals including 41 heart sound signals with "clear" AS systolic murmur and 43 with "clear" MR systolic murmur. Signals were initially preprocessed to detect 1st and 2nd heart sounds. Next a total of 100 features were determined for every heart sound signal and relevance to the differentiation between AS and MR was estimated. The performance of fully expanded decision tree classifiers and Pruned decision tree classifiers were studied based on various training and test datasets. Similarly, pruned decision tree classifiers were used to examine their differentiation capabilities. In order to build a generalized decision support system for heart sound diagnosis, we have divided the problem into sub problems, dealing with either one morphological characteristic of the heart-sound waveform or with difficult to distinguish cases. RESULTS: Relevance analysis on the different heart sound features demonstrated that the most relevant features are the frequency features and the morphological features that describe S1, S2 and the systolic murmur. The results are compatible with the physical understanding of the problem since AS and MR systolic murmurs have different frequency contents and different waveform shapes. On the contrary, in the diastolic phase there is no murmur in both diseases which results in the fact that the diastolic phase signals cannot contribute to the differentiation between AS and MR. We used a fully expanded decision tree classifier with a training set of 34 records and a test set of 50 records which resulted in a classification accuracy (total corrects/total tested) of 90% (45 correct/50 total records). Furthermore, the method proved to correctly classify both AS and MR cases since the partial AS and MR accuracies were 91.6% and 88.5% respectively. Similar accuracy was achieved using decision trees with a fraction of the 100 features (the most relevant). Pruned Differentiation decision trees did not significantly change the classification accuracy of the decision trees both in terms of partial classification and overall classification as well. DISCUSSION: Present work has indicated that decision tree algorithms decision tree algorithms can be successfully used as a basis for a decision support system to assist young and inexperienced clinicians to make better heart sound diagnosis. Furthermore, Relevance Analysis can be used to determine a small critical subset, from the initial set of features, which contains most of the information required for the differentiation. Decision tree structures, if properly trained can increase their classification accuracy in new test data sets. The classification accuracy and the generalization capabilities of the Fully Expanded decision tree structures and the Pruned decision tree structures have not significant difference for this examined sub-problem. However, the generalization capabilities of the decision tree based methods were found to be satisfactory. Decision tree structures were tested on various training and test data set and the classification accuracy was found to be consistently high.

Algorithms↗

PubMedDate not supplied

Influence of tree size on shoot structure and physiology of Pinus contorta and Pinus aristata.

This study examined the morphological and physiological characteristics of shoots of large and small mature trees of two pine species with different growth patterns and tree longevities: Rocky Mountain bristlecone pine (Pinus aristata Bailey) and lodgepole pine (Pinus contorta Dougl. ssp. latifolia Bailey). Large trees of P. aristata had 21% less annual shoot growth but retained more total foliar biomass per shoot than small trees because of a 95% longer leaf life span. Large trees of P. contorta had 69% less annual shoot growth and less foliage production per shoot, and even with a 23% longer leaf life span, they retained leass total foliar biomass per shoot than small trees. Needles of both species and sizes did not begin to abscise until they reached approximately 40-45% of their expected maximum life span. Foliar nitrogen and phosphorus concentrations, N(mass) and P(mass), of 1-year-old P. aristata leaves were significantly lower and higher, respectively, in the large than in the small trees. In P. contorta, N(mass) and P(mass) of 1-year-old leaves were similar in large and small trees. Pinus aristata also had a more consistent N(mass) with leaf age than P. contorta, and the pattern differed for small and large trees. Photosynthetic capacity and stomatal conductance of 1-year-old leaves of P. aristata were less in large trees than in small trees. The increased plasticity in leaf life span with tree size in P. aristata compared with P. contorta enabled an increase in foliar biomass per shoot in P. aristata that may offset the decrease in photosynthetic performance and contribute to the smaller reduction in shoot growth with tree size in P. aristata compared with P. contorta. Similarities in needle biomass distribution between species and tree sizes suggest that relative needle age may be of greater importance to the retention of the leaves than their chronological age. The magnitude of the changes in shoot characteristics with increasing tree size differed between the species and may reflect alternative strategies of resource allocation and use.

Journal Article↗

PubMed1999

Evidence that hydraulic conductance limits photosynthesis in old Pinus ponderosa trees.

We tested the hypotheses that hydraulic conductance is lower in old (about 250 years old and 30 m tall) compared to young (about 40 years old and 10 m tall) Pinus ponderosa Dougl. ex Laws. trees and that lower hydraulic conductance of old trees limits their photosynthesis. Hydraulic conductance at the end of summer 1995, calculated from leaf water potential and leaf gas exchange measurements on one-year-old needles, was 44% lower in old trees compared to young trees growing in a mixed age-class stand on the east slope of the Oregon Cascades. Whole-tree sapflow per unit leaf area averaged 53% lower in old trees compared to young trees and mean hydraulic conductance calculated from sapflow and water potential data was 63% lower in old trees than in young trees. For the entire summer, stomatal conductance (g(s)) and assimilation (A) declined more steeply with air saturation deficit (D) in old trees than in young trees. For both old and young trees, mean g(s) and A were approximately 32 and 21% lower, respectively, at typical midday D values (2.5-3.0 kPa). We hypothesized that if hydraulic conductance limits g(s) and A, then increasing or decreasing the leaf specific conductance of a branch will result in proportional changes in the responses of g(s) and A with D. Removal of 50% of the foliage from a set of experimental branches on old trees caused g(s) and A to decline less steeply with D in early summer, but values were not significantly different from control values in late summer. Cutting transverse notches in branches on young trees had no effect on the responses of g(s) and A with D. Leaf nitrogen content and photosynthetic capacity were similar suggesting that differences in g(s) and A between old and young trees were not caused by differences in photosynthetic capacity.

Journal Article↗

PubMed2026

The impact of non-native trees on galling and herbivory in New York City across space and time.

Cities and suburbs frequently plant native and non-native trees as foundation species, with non-natives cultivated in these areas for centuries while remaining non-invasive. Although previous research has found that native trees often host more arthropods, studies have not simultaneously looked across space and time to determine the consistency of tree origin on urban arthropods. We combined varied methods across spatial and temporal scales in New York City to test if native tree leaves consistently have more insect and mite interactions than long-established non-native trees, predicting stronger effect sizes for specialists (galling arthropods) than generalists (herbivory). We examined (1) congeneric species pairs, controlled for growing conditions and stoichiometry in an arboretum, (2) diverse oaks at a botanical garden, (3) community science records across Brooklyn, and (4) herbarium specimens from 1883 through present across the city. Across spatiotemporal scales, we found consistent results. Specialist interactions were striking: contemporary native trees supported numerous galling species, while only one congeneric non-native species hosted any galls. For generalists, contemporary native trees had equivalent to slightly greater herbivory. Over the last century, herbarium records showed that herbivory increased on non-native trees to nearly the level of natives, whereas native trees increased in gall abundance while non-native trees remained rarely galled. Our results demonstrate the impact of tree origin on tree-arthropod interactions in a real-world urban setting, with far fewer galls even when non-native tree species have been cultivated locally for centuries. Our findings will help city planners and property owners confidently choose native trees to promote arthropod biodiversity.

Trees↗

PubMed2006

Formulaic expert method to integrate evaluation and valuation of heritage trees in compact city.

Urban trees serve important environmental, social and economic functions, but similar to other natural endowments they are not customarily depicted in monetary terms. The needs to augment protection, funding and community support for urban greening call for proper valuation. Heritage trees (HTs), the cream of urban-tree stock, deserve special attention. Existing assessment methods do not give justice to outstanding trees in compact cities deficient in high-caliber greenery, and to their social-cultural-historical importance. They artificially separate evaluation from valuation, which should be a natural progression from the former. Review of tree valuation methods suggested the formula approach to be more suitable than contingent valuation and hedonic pricing, and provided hints on their strengths and weaknesses. This study develops an alternative formulaic expert method (FEM) that integrates evaluation and valuation, maximizes objectivity, broadly encompasses the key tree, tree-environment and tree-human traits, and accords realistic monetary value to HTs. Six primary criteria (dimension, species, tree, condition, location, and outstanding consideration) branched into 45 secondary criteria, each allocated numerical marks. Each primary criterion was standardized to carry equal weight, and a tree's maximum aggregate score is capped at 100. A Monetary Assignment Factor (MAF) to consign dollar value to each score unit was derived from three-year average per m(2) sale price of medium-sized residential flats. The applicability of FEM was tested on selected HTs in compact Hong Kong. The aggregate score of a tree multiplied by MAF yielded monetary value, which was on average 66 times higher than the result from the commonly-adopted Council of Tree and Landscape Appraisers method. The computed tree values could be publicized together with multiple tree benefits to raise understanding and awareness and rally support to protect HTs. The property-linked FEM could be flexibly applied to other cities, especially to assess HTs in compact developing cities.

Cities↗

PubMed2002

Tracing the history of nuclear releases: determination of 129I in tree rings.

Concentrations of the long-lived radioisotope 1291 were measured in dated tree rings in order to determine whether the distribution of this isotope reflects the history of nuclear deposition. 129I concentrations and 129I/127I ratios were analyzed in tree rings and bark samples from four trees at West Valley, NY, and from one tree at Rochester, NY. West Valley was the site of short-lived nuclear fuel reprocessing activities (1966-1972), while Rochester, located 115 km to the northeast, provided a regional control site for the study. The selected trees reflect different modes of fluid and nutrient transport in trees, with three species of ring-porous trees (elm, oak, and locust), one semidiffuse (cherry), and one diffuse-porous tree (maple). The results show that 1291 levels in ring-porous trees, in which xylem or hydrologic tissue is localized in the outermost growth ring, are generally well correlated with the expected 1291 deposition pattern for the region. In contrast, tree rings of the more common semidiffuse to diffuse-porous wood, where xylem is disseminated throughout the trunk, show a less well developed 129I signal, probably due to the transport of iodine ions across annual rings. Iodine concentrations in the tree rings range from 0.04 to 2 mg/kg, 129I/127I ratios from 6 x 10(-10) to 3.8 x 10(-6). Tree bark and the outermost rings show significantly higher 129I concentrations than the wood of the trunk. The 129I/127I ratios for bark are very similar to values obtained for surface soil and water at the two localities, while inner rings have ratios similar to those in deeper layers of the soil, reflecting different pathways for 129I uptake and the differences in ambient 1291 levels between the atmosphere and deep soil. Although ring porous trees preserve the depositional pattern of nuclear releases, rings older than or close to the onset of the nuclear age have 129I/127I ratios significantly above the preanthropogenic level, suggesting that even in these trees some redistribution of 129I occurs throughout the trunk. Our results indicate that growth rings from ring-porous wood are useful in time-series analyses of regional 129I deposition, yielding reliable information on relative changes in 129I concentrations but requiring caution in the reconstruction of absolute ambient concentrations during any given time.

Air Movements↗

PubMed2001

Dynamics of nonstructural carbohydrates and biomass yield in a fodder legume tree at different harvest intensities.

Tropical tree fodder is harvested by frequent prunings, and resprouting depends on nonstructural carbohydrate reserves in the remaining tree parts. We studied the effects of three pruning intensities (removal of all leaves and branches leaving 1 m of stem once a year (T-12), or every 6 months (T-6), and about 50% pruning every 2 months (P-2)) on regrowth and the dynamics of soluble sugars and starch in the legume tree Gliricidia sepium (Jacq.) Walp. growing under humid tropical conditions in Guadeloupe, Lesser Antilles. Carbohydrates were sampled in roots, stems and branches. Among pruned trees, trees in the T-6 harvest regime had the highest leaf fodder yield (0.73 kg tree(-1) year(-1)). High litter loss reduced leaf yield of T-12 trees, but compared with the other treatments, T-12 trees produced the most branch biomass (3.43 kg tree(-1)). Among treatments, P-2 trees had an intermediate leaf fodder yield and the lowest branch production. Sucrose, glucose and fructose were the most common sugars in all biomass compartments. Mannose, pinitol and an unidentified cyclitol were relatively abundant in branches. Root sugar and starch concentrations were unaffected by harvest regime. There was a significant interactive effect of harvest intensity and regrowth time on stem sugar concentration. Stem starch concentration was highest in T-12 trees. After a year of fodder harvesting, whole-tree reserves of nonstructural carbohydrates were highest in T-12 trees; however, a larger proportion of reserves were located in roots and stems of T-6 and P-2 trees. These reserves, which were not lost in pruning and contributed to regrowth of G. sepium after pruning, may explain the relatively small effects of harvesting regime on soluble sugar and starch concentrations.

Biomass↗

PubMed1995

Variation in the ratio of shoot silhouette area to needle area in fertilized and unfertilized Norway spruce trees.

We compared the range and variation in shoot silhouette area to projected leaf area ratio (SPAR) in fertilized and unfertilized (control) Norway spruce (Picea abies (L.) Karst.) trees. We measured SPAR for several view directions of 169 shoots at different depths in the crown of fertilized and control trees. There was an increase in SPAR with depth in the crown in both control and fertilized trees. In the fertilized trees, however, mean SPAR was larger overall, the increase with depth in the crown was steeper, and there was a larger variation in SPAR with inclination and rotation angle of the shoot (relative to the view direction). In particular, shoots in the lower crown of fertilized trees were rotationally asymmetrical ("flat") and had high values of the maximum ratio of shoot silhouette area to projected leaf area (SPAR(max)). Differences in SPAR between fertilized and control trees were explained by changes in shoot structure in response to fertilization and shading. Shoots of fertilized trees were larger and had more needle area than shoots of control trees. However, the ratio of needle area to shoot size was smaller in fertilized trees than in control trees, implying less within-shoot shading and, consequently, a larger SPAR. Also, the increase in SPAR with increased shading (depth in the crown) could be explained by a decrease in the ratio of needle area to shoot size. In addition, because fertilized trees had more needle area than control trees, the effect of shading at a given depth in the crown was more pronounced in fertilized trees than in control trees.

Journal Article↗

PubMed2001

Changes in physiological attributes of ponderosa pine from seedling to mature tree.

Plant physiological models are generally parameterized from many different sources of data, including chamber experiments and plantations, from seedlings to mature trees. We obtained a comprehensive data set for a natural stand of ponderosa pine (Pinus ponderosa Laws.) and used these data to parameterize the physiologically based model, TREGRO. Representative trees of each of five tree age classes were selected based on population means of morphological, physiological, and nearest neighbor attributes. Differences in key physiological attributes (gas exchange, needle chemistry, elongation growth, needle retention) among the tree age classes were tested. Whole-tree biomass and allocation were determined for seedlings, saplings, and pole-sized trees. Seasonal maxima and minima of gas exchange were similar across all tree age classes. Seasonal minima and a shift to more efficient water use were reached one month earlier in seedlings than in older trees because of decreased soil water availability in the rooting zone of the seedlings. However, carbon isotopic discrimination of needle cellulose indicated increased water-use efficiency with increasing tree age. Seedlings had the lowest needle and branch elongation biomass growth. The amount of needle elongation growth was highest for mature trees and amount of branch elongation growth was highest for saplings. Seedlings had the highest biomass allocation to roots, saplings had the highest allocation to foliage, and pole-sized trees had the highest allocation to woody tissues. Seedlings differed significantly from pole-sized and older trees in most of the physiological traits tested. Predicted changes in biomass with tree age, simulated with the model TREGRO, closely matched those of trees in a natural stand to 30 years of age.

Biomass↗