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At least 1,441 records · Page 80Linked to original sources
PubMed2002

Postdisaster emotional distress, depression and event-related variables: findings across child and adolescent developmental stages.

OBJECTIVE: Developmental approaches have not been widely used in child and adolescent posttraumatic stress disorder research, and little is known about developmental differences in response to postdisaster trauma. Our objective was to investigate postdisaster depression and emotional distress psychopathology across a broad child and adolescent developmental range. METHOD: Six months following a bushfire disaster, 2379 grade 4-12 school students -completed an extensive self-report battery, which included the Impact of Event Scale and the Birleson Depression Inventory. Generalized linear models were constructed to model the effects of multiple covariates on continuous outcome measures of depression and emotional distress. RESULTS: Significant independent predictors of persisting depressive symptoms were increased symptoms of emotional distress; increased symptoms of anxiety; evacuation experience; and school grade. Significant independent predictors of emotional distress were persisting depressive symptoms; perception of threat to self or to parents; evacuation experience; and school grade. Gender was not a significant predictor in either the depression or emotional distress multivariate models. Complex, non-linear relationships between depression, emotional distress and school grade were found. CONCLUSION: This study suggests that important developmental differences in postdisaster psychological responses exist across a broad spectrum of developmental stages in children.

Adolescent↗
PubMed2000

Allelic losses in carcinoma in situ and testicular germ cell tumours of adolescents and adults: evidence suggestive of the linear progression model.

Testicular germ cell tumours (TGCTs) may arise through a process of multi-step carcinogenesis, and loss of heterozygosity (LOH) at specific loci is likely to be an important early event, although this has not been studied in detail. In order to explore the pathogenetic relationships among TGCTs, we investigated the genetic changes in testicular tumours that exhibit a disease continuum through the precursor carcinoma in situ (CIS) to either seminoma (SE) and/or non-seminomatous germ cell tumour (NSGCT). Universal amplification has been performed on 87 TGCT specimens and 36 samples of CIS cells microdissected from single paraffin-embedded tumour sections from 40 patients, including multiple specimens of CIS and TGCT cells of varied histology microdissected from 24 individual patients. Seventy-seven microsatellite markers were used to assay these samples for LOH at candidate regions selected from the literature, mapping to 3q, 5q, 9p, 11p, 11q, 12q, 17p and 18q. Construction of deletion maps for each of these regions identified common sites of deletion at 3q27-q28, 5q31, 5q34-q35, 9p22-p21 and 12q22, which correlate with allelic losses we have also observed in the precursor CIS cells. Evidence for allelic loss at 3q27-q28 was observed in all of the embryonal carcinoma samples analysed. We conclude that inactivation of gene(s) within these regions are likely to be early events in the development and progression of TGCTs. These results also provide molecular evidence in support of the hypothesis that SE is an intermediate stage of development within a single neoplastic pathway of progression from CIS precursor cells to NSGCT.

Adolescent↗
PubMed1988

Linear pharmacokinetic models for evaluating unusual work schedules, exposure limits and body burdens of pollutants.

The adverse effects of workplace exposures to pollutants relate more accurately to the concentrations of pollutants in the body than in the environment. In many cases pharmacokinetic models may represent the external to internal concentration relationships with useful accuracy. Simplified equations are presented for stepwise calculations on a series of time-averaged, external concentrations to give a corresponding series of internal concentrations. Accurate results were obtained for averaging times not exceeding one-fourth of the biological half-life of the pollutant. A convenient measure of internal concentration is the external concentration that would be at in vivo equilibrium with it (termed biologically effective concentration). Three measures of damage burden are proposed, each appropriate for different toxic mechanisms. The calculations readily may be carried out on a programmable calculator or microcomputer. Illustrative examples show how unusual work schedules may be compared with an 8 hr/day, 5 days/week schedule and how appropriate short- and long-term exposure limits may be determined. Other examples, illustrated for lead, relate absorbed mass rates to body concentrations and body burdens in a two-compartment kinetic model. These calculations should provide a more accurate evaluation of fluctuating concentrations, which can be handled easily.

Absorption↗
PubMed2005

Calcium activation of ryanodine receptor channels--reconciling RyR gating models with tetrameric channel structure.

Despite its importance and abundance of experimental data, the molecular mechanism of RyR2 activation by calcium is poorly understood. Recent experimental studies involving coexpression of wild-type (WT) RyR2 together with a RyR2 mutant deficient in calcium-dependent activation (Li, P., and S.R. Chen. 2001. J. Gen. Physiol. 118:33-44) revealed large variations of calcium sensitivity of the RyR tetramers with their monomer composition. Together with previous results on kinetics of Ca activation (Zahradníková, A., I. Zahradník, I. Györke, and S. Györke. 1999. J. Gen. Physiol. 114:787-798), these data represent benchmarks for construction and testing of RyR models that would reproduce RyR behavior and be structurally realistic as well. Here we present a theoretical study of the effects of RyR monomer substitution by a calcium-insensitive mutant on the calcium dependence of RyR activation. Three published models of tetrameric RyR channels were used either directly or after adaptation to provide allosteric regulation. Additionally, two alternative RyR models with Ca binding sites created jointly by the monomers were developed. The models were modified for description of channels composed of WT and mutant monomers. The parameters of the models were optimized to provide the best approximation of published experimental data. For reproducing the observed calcium dependence of RyR tetramers containing mutant monomers (a) single, independent Ca binding sites on each monomer were preferable to shared binding sites; (b) allosteric models were preferable to linear models; (c) in the WT channel, probability of opening to states containing a Ca2+-free monomer had to be extremely low; and (d) models with fully Ca-bound closed states, additional to those of an Monod-Wyman-Changeaux model, were preferable to models without such states. These results provide support for the concept that RyR activation is possible (albeit vanishingly small in WT channels) in the absence of Ca2+ binding. They also suggest further avenues toward understanding RyR gating.

Allosteric Regulation↗
PubMed2003

Use of a generalized linear mixed model to reduce excessive heterogeneity in petroleum spray oil bioassay data.

High heterogeneity (variance) is a consistent and significant problem in petroleum spray oil derived bioassay data. It can mask small statistical differences sought by researchers in relative toxicity or potency analysis. To compensate for excessive heterogeneity, researchers often use very large sample sizes to improve statistical accuracy. We present a statistical method of modeling heterogeneity extending the conventional probit model by adding random effects to it. We illustrate this by reanalyzing 26 of our own published experiments. Twelve of these had excessive heterogeneity that was significantly reduced in ten cases by including random replicate effects with or without random slopes. Five were further improved by allowing a nonlinear (spline) response. The result was tighter confidence intervals for the estimates of lethal dose.

Animals↗
PubMed2006

Simplification and its consequences in biological modelling: conclusions from a study of calcium oscillations in hepatocytes.

Systems Biology requires that biological modelling is scaled up from small components to system level. This can produce exceedingly complex models, which obscure understanding rather than facilitate it. The successful use of highly simplified models would resolve many of the current problems faced in Systems Biology. This paper questions whether the conclusions of simple mathematical models of biological systems are trustworthy. The simplification of a specific model of calcium oscillations in hepatocytes is examined in detail, and the conclusions drawn from this scrutiny generalized. We formalize our choice of simplification approach through the use of functional 'building blocks'. A collection of models is constructed, each a progressively more simplified version of a well-understood model. The limiting model is a piecewise linear model that can be solved analytically. We find that, as expected, in many cases the simpler models produce incorrect results. However, when we make a sensitivity analysis, examining which aspects of the behaviour of the system are controlled by which parameters, the conclusions of the simple model often agree with those of the richer model. The hypothesis that the simplified model retains no information about the real sensitivities of the unsimplified model can be very strongly ruled out by treating the simplification process as a pseudo-random perturbation on the true sensitivity data. We conclude that sensitivity analysis is, therefore, of great importance to the analysis of simple mathematical models in biology. Our comparisons reveal which results of the sensitivity analysis regarding calcium oscillations in hepatocytes are robust to the simplifications necessarily involved in mathematical modelling. For example, we find that if a treatment is observed to strongly decrease the period of the oscillations while increasing the proportion of the cycle during which cellular calcium concentrations are rising, without affecting the inter-spike or maximum calcium concentrations, then it is likely that the treatment is acting on the plasma membrane calcium pump.

Animals↗
PubMed2006

Modelling in molecular biology: describing transcription regulatory networks at different scales.

Approaches to describe gene regulation networks can be categorized by increasing detail, as network parts lists, network topology models, network control logic models or dynamic models. We discuss the current state of the art for each of these approaches. We study the relationship between different topology models, and give examples how they can be used to infer functional annotations for genes of unknown function. We introduce a new simple way of describing dynamic models called finite state linear model (FSLM). We discuss the gap between the parts list and topology models on one hand, and network logic and dynamic models, on the other hand. The first two classes of models have reached a genome-wide scale, while for the other model classes high-throughput technologies are yet to make a major impact.

Computational Biology↗