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PubMed2001

Geometrical and crystallographic constraints determine the self-organization of shell microstructures in Unionidae (Bivalvia: Mollusca).

Unionid shells are characterized by an outer aragonitic prismatic layer and an inner nacreous layer. The prisms of the outer shell layer are composed of single-crystal fibres radiating from spheruliths. During prism development, fibres progressively recline to the growth front. There is competition between prisms, leading to the selection of bigger, evenly sized prisms. A new model explains this competition process between prisms, using fibres as elementary units of competition. Scanning electron microscopy and X-ray texture analysis show that, during prism growth, fibres become progressively orientated with their three crystallographic axes aligned, which results from geometric constraints and space limitations. Interestingly transition to the nacreous layer does not occur until a high degree of orientation of fibres is attained. There is no selection of crystal orientation in the nacreous layer and, as a result, the preferential orientation of crystals deteriorates. Deterioration of crystal orientation is most probably due to accumulation of errors as the epitaxial growth is suppressed by thick or continuous organic coats on some nacre crystals. In conclusion, the microstructural arrangement of the unionid shell is, to a large extent, self-organized with the main constraints being crystallographic and geometrical laws.

Animals↗

PubMed1988

Transcription by RNA polymerase II induces changes of DNA topology in yeast.

We show that induction of transcription of a CYC1-lacZ fusion gene, borne on a yeast plasmid, causes an increase in negative superhelicity of approximately five turns. This increase is abolished by deletion of either essential element of the CYC1 promoter, the upstream activation site (UAS), or the TATA boxes. Several experiments indicate that the size of the increase is proportional to the size of the transcribed region. First, an internal deletion removing half of the CYC1-lacZ transcribed region results in a plasmid whose negative superhelicity on induction is intermediate between promoter-deletion plasmids and the parental plasmid. Second, plasmids bearing insertions of a fragment containing the putative CYC1 terminator into the CYC1-lacZ fusion gene have relative negative superhelicities proportional to the length of the truncated fusion transcripts generated. A plausible model explaining these observations is that local unwinding of the double helix by transcribing RNA polymerase generates positively supercoiled DNA, which is subsequently relaxed by a topoisomerase.

Chromosome Deletion↗

PubMedDate not supplied

Behavioral analysis of Drosophila landmark learning in the flight simulator.

Drosophila flies can be trained in the flight simulator to operantly avoid heat by choosing certain orientations relative to landmarks. Flies primarily store pattern orientations associated with the absence of heat. They readily escape from heat-associated orientations under the direct influence of the reinforcer but not in the subsequent memory tests. The flies tend to keep the largest possible distance from the "hot" or potentially "hot" regions, that is, they head toward the center of the "cold" sector. The results are discussed in the light of the retinotopic matching model explaining visual memory in flies by the superposition of a retinotopically stored template with the actual retinal image. Window experiments confining visual feedback to two 90 degrees sectors indicate that the memory template covers most of the visible space.

Animals↗

PubMed2002

Internal spatiotemporal stochastic resonance in the presence of weak noise.

We show the existence of internal stochastic resonance in a microscopic stochastic model for the oscillating A+1 / 2B(2) reaction on a square lattice. This stochastic resonance arises directly from the elementary reaction steps of the system without any external input. The lattice gas model is investigated by means of Monte Carlo simulations. It shows oscillation phenomena and mesoscopic pattern formation. Stochastic resonance arises when homogeneous nucleation of the individual lattice site states is considered. This nucleation is modeled as a weak noise process. As a result, synchronization of the kinetic oscillations is obtained. We show that all characteristics known from the research on stochastic resonance are obtained in our model. We also show that the model explains easily several phenomena observed in the experiment. Internal stochastic resonance may thus be an internal regulation mechanism of extreme adaptability.

Journal Article↗

PubMed2004

Role of wave interaction of wires and split-ring resonators for the losses in a left-handed composite.

In this work the analytical model explaining the main reason of transmission losses in the known two-phase lattice of Smith, Schultz, and Shelby representing a uniaxial variant of left-handed medium (LHM) at microwaves is presented. The role of electromagnetic interaction between split-ring resonators (SRRs) and straight wires leading to the dramatic increase of ohmic losses in SRRs within the band when the meta-material becomes a LHM is clarified. This paper explains why in this structure, rather high transmission losses are observed in the experimental data, whereas these losses in a separate lattice of SRRs and in a lattice of wires are negligible at these frequencies.

Journal Article↗

PubMed2004

Fractional rotational Brownian motion in a uniform dc external field.

The longitudinal and transverse components of the complex dielectric susceptibility tensor of an assembly of dipolar particles subjected to a dc bias field are evaluated in the context of a fractional noninertial rotational diffusion model. Exact and approximate solutions for the dielectric dispersion and absorption spectra are obtained. It is shown that a knowledge of the effective relaxation times for normal rotational diffusion is sufficient to predict accurately the anomalous dielectric relaxation behavior of the system for all time scales of interest. Simple equations for the characteristic frequencies of the dielectric loss spectra are obtained in terms of the physical model parameters (dimensionless field and fractional exponent). The model explains the anomalous (Cole-Cole like) relaxation of complex dipolar systems, where the anomalous exponent differs from unity (corresponding to the normal dielectric relaxation), i.e., the relaxation process is characterized by a broad distribution of relaxation times.

Journal Article↗

PubMed2005

Zeros in single-channel transmission through double quantum dots.

By using a simple model we consider single-channel transmission through a double quantum dot that consists of two single dots coupled by a wire of finite length L . Each of the two single dots is characterized by a few energy levels only, and the wire is assumed to have only one level whose energy depends on the length L . The transmission is described by using S matrix theory and the effective non-Hermitian Hamilton operator H(eff) of the system. The decay widths of the eigenstates of H(eff) depend strongly on energy. The model explains the origin of the transmission zeros of the double dot that is considered by us. Mostly, they are caused by (destructive) interferences between neighboring levels and are of first order. When, however, both single dots are identical and their transmission zeros are of first order, those of the double dot are of second order. First-order transmission zeros cause phase jumps of the transmission amplitude by pi, while there are no phase jumps related to second-order transmission zeros. In this latter case, a phase jump occurs due to the fact that the width of one of the states vanishes when crossing the energy of the transmission zero. The parameter dependence of the widths of the resonance states is determined by the spectral properties of the two single dots.

Journal Article↗

PubMed2005

Fractional rotational diffusion of rigid dipoles in an asymmetrical double-well potential.

The longitudinal and transverse components of the complex dielectric susceptibility tensor of an assembly of dipolar molecules rotating in an asymmetric double-well potential are evaluated using a fractional rotational diffusion equation (based on the diffusion limit of a fractal time random walk) for the distribution function of orientations of the molecules on the surface of the unit sphere. The calculation is the fractional analog of the Debye theory of orientational relaxation in the presence of external and mean field potentials (excluding inertial effects). Exact and approximate (based on the exponential separation for normal diffusion of the time scales of the intrawell and overbarrier relaxation processes associated with the bistable potential) solutions for the dielectric dispersion and absorption spectra are obtained. It is shown that a knowledge of the characteristic relaxation times for normal rotational diffusion is sufficient to predict accurately the anomalous dielectric relaxation behavior of the system for all time scales of interest. The model explains the anomalous (Cole-Cole-like) relaxation of complex dipolar systems, where the anomalous exponent differs from unity (corresponding to the normal dielectric relaxation), i.e., the relaxation process is characterized by a broad distribution of relaxation times (e.g., in glass-forming liquids).

Journal Article↗

PubMed2006

Self-consistent field theory of protein adsorption in a non-Gaussian polyelectrolyte brush.

To describe adsorption of globular protein molecules in a polyelectrolyte brush we use the strong-stretching approximation of the Edwards self-consistent field equation, combined with corrections for a non-Gaussian brush. To describe chemical potentials in this mixture of (globular) species of widely varying sizes (ions, brush polyelectrolyte segments, globular protein molecules), we use the Boublik-Mansoori-Carnahan-Starling-Leland equation of state derived for polydisperse mixtures of spherical particles. The polyelectrolyte chain is described in this approach as a string of beads with the beads of a size related to the chain diameter. We use the one-dimensional Poisson equation to describe the electrostatic field and include the ionizable character of both the brush polyions and the protein molecules. This model explains the experimental observation of high amounts of protein adsorption in a polyacid brush for values above the isoelectric point of the protein as being due to charge reversal of the protein molecules upon entry in the brush. We find a distinct minimum in protein concentration near the edge of the brush. With increasing this barrier to protein transfer becomes larger, but much less so when we increase the ionic strength, a difference that might relate to an experimentally observed difference in the protein release rate in these two cases. A free energy analysis shows that the release of small ions from the brush and the increase of brush ionization are the two driving forces for protein adsorption in a like-charged brush.

Journal Article↗

PubMed2006

Bifurcation of droplet flows within capillaries.

Flows of droplets through networks of microchannels differ significantly from the flow of simple fluids. Our report focuses on the paths of individual droplets through the simplest possible network: a channel that splits into two arms that subsequently recombine. This simple system exhibits complex patterns of flow: both periodic and irregular, depending on the frequency at which the drops are fed into the "loop." A numerical model explains these results and shows regions of regular patterns separated by regions of high complexity. Our results elicit new questions regarding the dynamics of flow of discrete elements of fluids through networks, and point to potential opportunities and difficulties in the design of integrated mini-laboratories operating on droplets.

Journal Article↗

PubMed2000

Infrared intensity enhancement of the CN stretch of HCN by coadsorbed CO on the Cu(100) surface

Reflection absorption infrared spectra reveal a strong enhancement in the intensity of the CN stretch in a mixed ordered overlayer of HCN and CO on the Cu(100) surface. Various combinations of HCN and CO isotopomers show that the intensity enhancement decreases with increasing frequency difference between nu(CN) and nu(CO). The intensity of the 2092 cm(-1) band of H12C14N is enhanced by a factor of 155+/-20 through coupling to the 2077 cm(-1) band of 12C16O. A simple two-state coupling model explains the isotopomer dependence of the degree of enhancement.

Journal Article↗

PubMed2000

Electron and hole focusing in CoSi2/Si(111) observed by ballistic electron emission microscopy

In ballistic electron emission microscopy (BEEM) the propagation of hot carriers in thin metal films has long been treated using a free electron model. While the model explains many experimental findings, it cannot account for the lateral resolution observed for both electrons and holes on epitaxial CoSi(2)/Si(111), where interfacial point defects of atomic size appear as small as 1.3 nm, even below a 5.6 nm thick film. We present ab initio calculations explaining this high resolution in terms of conduction (valence) band structure focusing of electrons (holes), according to a recent Green's function approach to the BEEM process.

Journal Article↗

PubMed2000

Phenomenological model of dynamic nonlinear response of relaxor ferroelectrics

A phenomenological model was proposed which describes frequency dispersion of nonlinear dielectric response of relaxor ferroelectrics (relaxors) as a result of dispersion of their linear dielectric permittivity. The model was applied to Pb(Mg(1/3)Nb(2/3))O3 (PMN) relaxor. It provided a good qualitative description of temperature and frequency dependence of the third harmonics of PMN. Analysis within the model yielded a frequency independent nonlinear coefficient corresponding to static nonlinear dielectric susceptibility. The model explained the recently reported for PMN data on the Vogel-Fulcher law for frequency dependence of the temperature at which the third harmonics passes a maximum.

Journal Article↗

PubMed2000

Ultrafast optical nonlinearity in the quasi-one-dimensional mott insulator Sr2CuO3

We report strong instantaneous photoinduced absorption in the quasi-one-dimensional Mott insulator Sr2CuO3 in the IR spectral region. The observed photoinduced absorption is to an even-parity two-photon state that occurs immediately above the absorption edge. Theoretical calculation based on a two-band extended Hubbard model explains the experimental features and indicates that the strong two-photon absorption is due to a very large dipole coupling between nearly degenerate one- and two-photon states. Room temperature picosecond recovery of the optical transparency suggests the strong potential of Sr2CuO3 for all-optical switching.

Journal Article↗

PubMed2000

Origin of surface conductivity in diamond

Hydrogen-terminated diamond exhibits a high surface conductivity (SC) that is commonly attributed to the direct action of hydrogen-related acceptors. We give experimental evidence that hydrogen is only a necessary requirement for SC; exposure to air is also essential. We propose a mechanism in which a redox reaction in an adsorbed water layer provides the electron sink for the subsurface hole accumulation layer. The model explains the experimental findings including the fact that hydrogenated diamond is unique among all semiconductors in this respect.

Journal Article↗

PubMed2002

Kondo model for the "0.7 anomaly" in transport through a quantum point contact.

Experiments on quantum point contacts have highlighted an anomalous conductance plateau around 0.7(2e(2)/h), with features suggestive of the Kondo effect. Here, an Anderson model for transport through a point contact analyzed in the Kondo limit. Hybridization to the band increases abruptly with energy but decreases with valence, so that the background conductance and the Kondo temperature T(K) are dominated by different valence transitions. This accounts for the high residual conductance above T(K). The model explains the observed gate-voltage, temperature, magnetic field, and bias-voltage dependences. A spin-polarized current is predicted even for low magnetic fields.

Journal Article↗

PubMed2003

Metal nanoplasmas as bright sources of hard X-ray pulses.

We report significant enhancements in light coupling to intense-laser-created solid plasmas via surface plasmon and "lightning rod" effects. We demonstrate this in metal nanoparticle-coated solid targets irradiated with 100 fs, 806 nm laser pulses, focused to intensities approximately 10(14)-10(15) W cm(-2). Our experiments show a 13-fold enhancement in hard x-ray yield (10-200 keV) emitted by copper nanoparticle plasmas formed at the focal volume. A simple model explains the observed enhancement quantitatively and provides pointers to the design of structured surfaces for maximizing such emissions.

Journal Article↗

PubMed2003

Dynamical symmetry breaking of extended gauge symmetries.

We construct asymptotically free gauge theories exhibiting dynamical breaking of the left-right gauge group G(LR)=SU(3)(c) x SU(2)(L) x SU(2)(R) x U(1)(B-L), and its extension to the Pati-Salam gauge group G(422)=SU(4)(PS) x SU(2)(L) x SU(2)(R). The models incorporate technicolor for electroweak breaking, and extended technicolor for the breaking of G(LR) and G422 and the generation of fermion masses. They include a seesaw mechanism for neutrino masses, without a grand unified theory (GUT) scale. These models explain why G(LR) and G422 break to SU(3)(c) x SU(2)(L) x U(1)(Y), and why this takes place at a scale (approximately 10(3) TeV) large compared to the electroweak scale, but much smaller than a GUT scale.

Journal Article↗