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Statistical characteristics of climbing fiber spikes necessary for efficient cerebellar learning.

Mean firing rates (MFRs), with analogue values, have thus far been used as information carriers of neurons in most brain theories of learning. However, the neurons transmit the signal by spikes, which are discrete events. The climbing fibers (CFs), which are known to be essential for cerebellar motor learning, fire at the ultra-low firing rates (around 1 Hz), and it is not yet understood theoretically how high-frequency information can be conveyed and how learning of smooth and fast movements can be achieved. Here we address whether cerebellar learning can be achieved by CF spikes instead of conventional MFR in an eye movement task, such as the ocular following response (OFR), and an arm movement task. There are two major afferents into cerebellar Purkinje cells: parallel fiber (PF) and CF, and the synaptic weights between PFs and Purkinje cells have been shown to be modulated by the stimulation of both types of fiber. The modulation of the synaptic weights is regulated by the cerebellar synaptic plasticity. In this study we simulated cerebellar learning using CF signals as spikes instead of conventional MFR. To generate the spikes we used the following four spike generation models: (1) a Poisson model in which the spike interval probability follows a Poisson distribution, (2) a gamma model in which the spike interval probability follows the gamma distribution, (3) a max model in which a spike is generated when a synaptic input reaches maximum, and (4) a threshold model in which a spike is generated when the input crosses a certain small threshold. We found that, in an OFR task with a constant visual velocity, learning was successful with stochastic models, such as Poisson and gamma models, but not in the deterministic models, such as max and threshold models. In an OFR with a stepwise velocity change and an arm movement task, learning could be achieved only in the Poisson model. In addition, for efficient cerebellar learning, the distribution of CF spike-occurrence time after stimulus onset must capture at least the first, second and third moments of the temporal distribution of error signals.

Action Potentials↗

A mean-field model for orientation tuning, contrast saturation, and contextual effects in the primary visual cortex.

Orientation-selective cells in the primary visual cortex of monkeys and cats are often characterized by an orientation-tuning width that is invariant under stimulus contrast. At the same time their contrast response function saturates or even super-saturates for high values of contrast. When two bar stimuli are presented within their classical receptive field, the neuronal response decreases with the intersection angle. When two stimuli are presented inside and outside the classical receptive field, the response of the cell increases with the intersection angle. Both cats and monkeys show iso-orientation suppression, which has sometimes been reported to be combined with cross-orientation facilitation. This property has previously been described as sensitivity to orientation contrast. We address the emergence of these effects with a model that describes the processing of geniculocortical signals through cortical circuitry. We hypothesize that short intracortical fibers mediate the classical receptive field effects, whereas long-range collaterals evoke contextual effects such as sensitivity to orientation contrast. We model this situation by setting up a mean-field description of two neighboring cortical hypercolumns, which can process a nonoverlapping center and a (nonclassical) surround stimulus. Both hypercolumns interact via idealized long-range connections. For an isolated model hypercolumn, we find that either contrast saturation or contrast-invariant orientation tuning emerges, depending on the strength of the lateral excitation. There is no parameter regime, however, where both phenomena emerge simultaneously. In the regime where contrast saturation is found, the model also correctly reproduces suppression due to a second, cross-oriented grid within the classical receptive field. If two model hypercolumns are mutually coupled by long-range connections that are iso-orientation specific, nonclassical surround stimuli show either suppression or facilitation for all surround orientations. Sensitivity to orientation contrast is not observed. This property requires excitatory-to-excitatory long-range couplings that are less orientation specific than those targeting inhibitory neurons.

Animals↗

Supercomputer algorithms for efficient linear octree encoding of three-dimensional brain images.

We designed and implemented algorithms for three-dimensional (3-D) reconstruction of brain images from serial sections using two important supercomputer architectures, vector and parallel. These architectures were represented by the Cray YMP and Connection Machine CM-2, respectively. The programs operated on linear octree representations of the brain data sets, and achieved 500-800 times acceleration when compared with a conventional laboratory workstation. As the need for higher resolution data sets increases, supercomputer algorithms may offer a means of performing 3-D reconstruction well above current experimental limits.

Algorithms↗

Status and progress in on-line spectrometric monitoring and control of plant nutrient solutions.

Biotronics has been involved, under NASA sponsorship, in a wide ranging research and development program for instrumentation used in the monitoring and control of controlled environment agriculture. This program has embraced both chemical monitoring of plant nutrient solutions as well as microbiological monitoring of bacteria and fungi in these same solutions. This paper emphasizes the microbiological monitoring aspects of this program. In contrast to traditional methods of microbiological analysis based on culturing, staining and microscopic observation, the development described here is based on spectroscopic measurements, more specifically spectral fluorometry. The rationale, objectives, analytical methods and new instrumentation employed in the development of an on-line microbiological analyzer (MBA) are presented in some detail. Finally, the signal processing/pattern recognition methods used to evaluate the spectral data and produce estimates of microbial populations are described along with experimental test results to conclude the paper.

Ecological Systems, Closed↗

Towards a biomolecular computer.

A new version of computing and information processing devices may result from major principles of information processing at molecular level. Non-discrete biomolecular computers based on these principles seems to be capable of solving problems of high computational complexity. One of the possible ways to implement these devices is based on biochemical non-linear dynamical systems. Means and ways to materialize biomolecular computers are discussed.

Biomedical Engineering↗

A new approach in artificial neuron theory for use in computer aided diagnosis.

An artificial neuron, which has an original training process, has been developed as part of a project in the field of computer aided diagnosis. The aim of this work is to analyse medical images to recognise an abnormal region of an organ. In contrast to other methods, generating information of the abnormality's level is part of the recognition stage. Moreover, the whole process is independent of the particular disease. The neuron was tested using lung images taken by a gamma camera.

Diagnosis, Computer-Assisted↗

Mental state inference using visual control parameters.

Although we can often infer the mental states of others by observing their actions, there are currently no computational models of this remarkable ability. Here we develop a computational model of mental state inference that builds upon a generic visuomanual feedback controller, and implements mental simulation and mental state inference functions using circuitry that subserves sensorimotor control. Our goal is (1) to show that control mechanisms developed for manual manipulation are readily endowed with visual and predictive processing capabilities and thus allows a natural extension to the understanding of movements performed by others; and (2) to give an explanation on how cortical regions, in particular the parietal and premotor cortices, may be involved in such dual mechanism. To analyze the model, we simulate tasks in which an observer watches an actor performing either a reaching or a grasping movement. The observer's goal is to estimate the 'mental state' of the actor: the goal of the reaching movement or the intention of the agent performing the grasping movement. We show that the motor modules of the observer can be used in a 'simulation mode' to infer the mental state of the actor. The simulations with different grasping and non-straight line reaching strategies show that the mental state inference model is applicable to complex movements. Moreover, we simulate deceptive reaching, where an actor imposes false beliefs about his own mental state on an observer. The simulations show that computational elements developed for sensorimotor control are effective in inferring the mental states of others. The parallels between the model and cortical organization of movement suggest that primates might have developed a similar resource utilization strategy for action understanding, and thus lead to testable predictions about the brain mechanisms of mental state inference.

Cerebral Cortex↗

Fading memory and kernel properties of generic cortical microcircuit models.

It is quite difficult to construct circuits of spiking neurons that can carry out complex computational tasks. On the other hand even randomly connected circuits of spiking neurons can in principle be used for complex computational tasks such as time-warp invariant speech recognition. This is possible because such circuits have an inherent tendency to integrate incoming information in such a way that simple linear readouts can be trained to transform the current circuit activity into the target output for a very large number of computational tasks. Consequently we propose to analyze circuits of spiking neurons in terms of their roles as analog fading memory and non-linear kernels, rather than as implementations of specific computational operations and algorithms. This article is a sequel to [W. Maass, T. Natschläger, H. Markram, Real-time computing without stable states: a new framework for neural computation based on perturbations, Neural Comput. 14 (11) (2002) 2531-2560, Online available as #130 from: ], and contains new results about the performance of generic neural microcircuit models for the recognition of speech that is subject to linear and non-linear time-warps, as well as for computations on time-varying firing rates. These computations rely, apart from general properties of generic neural microcircuit models, just on capabilities of simple linear readouts trained by linear regression. This article also provides detailed data on the fading memory property of generic neural microcircuit models, and a quick review of other new results on the computational power of such circuits of spiking neurons.

Action Potentials↗

Nonlinearity of the population activity to transparent motion.

How to represent transparent motion with neuronal populations is important problem for the theory of multiple motion detection. Previous models are based on the assumption that the population activity to transparent motion is proportional to a linear combination of the responses to individual motions. However, there is a possibility that the population activity becomes a nonlinear combination of each motion's component due to the interference, or cross-talk, between two moving patterns. Here we show the model analysis of how a neuronal population represents multiple motions with the spatiotemporal energy model. The model analysis indicates there is a special case that the interference leads to the nonlinearity in the population response, although the linear combination assumption is satisfied in general. This special case corresponds to locally-paired-dot (LPD) stimuli that produce no transparency. Computer simulations show that a simple model for motion detection fails to discriminate two overlapping motions in this case due to the nonlinearity in population responses, and this failure is similar to human perception in LPD stimuli. This result suggests that non-transparency perception in LPD stimuli is naturally explained by the nonlinear property of neuronal responses.

Algorithms↗

Functional multi-layer perceptron: a non-linear tool for functional data analysis.

In this paper, we study a natural extension of multi-layer perceptrons (MLP) to functional inputs. We show that fundamental results for classical MLP can be extended to functional MLP. We obtain universal approximation results that show the expressive power of functional MLP is comparable to that of numerical MLP. We obtain consistency results, which imply that the estimation of optimal parameters for functional MLP is statistically well defined. We finally show on simulated and real world data that the proposed model performs in a very satisfactory way.

Algorithms↗

A model for the interaction of oscillations and pattern generation with real-time computing in generic neural microcircuit models.

It is shown that real-time computations on spike patterns and temporal integration of information in neural microcircuit models are compatible with potentially descruptive additional inputs such as oscillations. A minor change in the connection statistics of such circuits (making synaptic connections to more distal target neurons more likely for excitatory than for inhibitory neurons) endows such generic neural microcircuit model with the ability to generate periodic patterns autonomously. We show that such pattern generation can also be multiplexed with pattern classification and temporal integration of information in the same neural circuit. These results can be interpreted as showing that periodic activity provides a second channel for communication in neural systems which can be used to synchronize or coordinate spatially separated processes, without encumbering local real-time computations on spike trains in diverse neural circuits.

Action Potentials↗

Shape differences of the brain ventricles in Alzheimer's disease.

The brain ventricles are surrounded by gray and white matter structures that are often affected in dementia in general and Alzheimer's disease (AD) in particular. Any change of volume or shape occurring in these structures must affect the volume and shape of the ventricles. It is well known that ventricular volume is significantly higher in AD patients compared to age-matched healthy subjects. However, the large overlap between the two volume distributions makes the measurement unsuitable as a biomarker of the disease. The purpose of this work was to assess whether local shape differences of the ventricles can be detected when comparing AD patients and controls. In this work, we captured the ventricle's shape and shape variations of 29 AD subjects and 25 age-matched controls, using a fully automatic shape modeling technique. By applying permutation tests on every single node of a mesh representation of the shapes, we identified local areas with significant differences. About 22% of an average surface of the ventricles presented significant difference (P < 0.05) ( approximately 14% of the left against approximately 7% of the right side). We found out that in patients with Alzheimer disease, not only the lateral horns were significantly affected, but also the areas adjacent to the anterior corpus callosum, the splenium of the corpus callosum, the amygdala, the thalamus, the tale of the caudate nuclei (especially the left one), and the head of the left caudate nucleus.

Aged↗

Computational models of the basal ganglia: from robots to membranes.

With the rapid accumulation of neuroscientific data comes a pressing need to develop models that can explain the computational processes performed by the basal ganglia. Relevant biological information spans a range of structural levels, from the activity of neuronal membranes to the role of the basal ganglia in overt behavioural control. This viewpoint presents a framework for understanding the aims, limitations and methods for testing of computational models across all structural levels. We identify distinct modelling strategies that can deliver important and complementary insights into the nature of problems the basal ganglia have evolved to solve, and describe methods that are used to solve them.

Animals↗

What the cerebellum computes.

The brain is an organ that processes information. Brain systems such as the cerebellum receive inputs from other systems and generate outputs according to their internal rules of information processing. Thus, our understanding of the cerebellum is ultimately best expressed in terms of the information processing it accomplishes and how cerebellar neurons and synapses produce this processing. We review evidence that indicates how Pavlovian eyelid conditioning reveals cerebellar processing to be an example of feedforward control. Eyelid conditioning demonstrates a capacity for learning in the cerebellum that is error driven, associative and temporally specific--as is required for feedforward control. This computation-centered view is consistent with a variety of proposed functions of the cerebellum, including sensory-motor integration, motor coordination, motor learning and timing. Moreover, feedforward processing could be the common link between motor and non-motor functions of the cerebellum.

Animals↗

Rook methodology: a flexible framework for exact test development in the matching paradigm.

As well as supplying a means of enumerating permutations, rook methodology provides a flexible and fertile analytic framework that can facilitate statistical test development in applied settings. Four applications in psychology, where rook methodology provides exact small-sample tests, are described. They are (a) matching under uncertainty, (b) ordered spatial memory, (c) rater agreement under uncertainty, and (d) multiple object relocation. An online computer program, that supplies an exact small-sample test of hypotheses within the rook paradigm, is outlined. The program, which exploits rook methodology to enumerate permutations, may be accessed and executed via the Internet using an ordinary browser.

Computer Simulation↗

Automated detection and characterization of multiple sclerosis lesions in brain MR images.

In the present study an automatic algorithm for detection and contouring of multiple sclerosis (MS) lesions in brain magnetic resonance (MR) images is introduced. This algorithm automatically detects MS lesions in axial proton density, T2-weighted, gadolinium enhanced, and fast fluid attenuated inversion recovery (FLAIR) brain MR images. Automated detection consists of three main stages: (1) detection and contouring of all hyperintense signal regions within the image; (2) partial elimination of false positive segments (defined herein as artifacts) by size, shape index, and anatomical location; (3) the use of an artificial neural paradigm (Back-Propagation) for final removal of artifacts by differentiating them from true MS lesions. The algorithm was applied to 45 images acquired from 14 MS patients. The algorithm's sensitivity was 0.87 and the specificity 0.96. In 34 images, 100% of the lesions were detected. The algorithm potentially may serve as a useful preprocessing tool for quantitative MS monitoring via magnetic resonance imaging.

Algorithms↗

Blind source separation in the presence of weak sources.

We investigate the information processing of a linear mixture of independent sources of different magnitudes. In particular we consider the case where a number m of the sources can be considered as "strong" as compared to the other ones, the "weak" sources. We find that it is preferable to perform blind source separation in the space spanned by the strong sources, and that this can be easily done by first projecting the signal onto the m largest principal components. We illustrate the analytical results with numerical simulations.

Computer Simulation↗