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Temporal changes in aggregation: a laboratory study.

Changes in the variance to mean ratio and the parameter k of the negative binomial distribution were used to study temporal changes in the degree of aggregation of the monogenean parasite, Gyrodactylus turnbulli in free-running laboratory populations of the guppy, Poecilia reticulata. The parasite undergoes recurrent epidemic cycles in the host population under conditions of regular immigration of uninfected guppies. During the early phase of the epidemic, heterogeneity among fish together with direct reproduction are thought to contribute to the increasing degree of aggregation. During the increasing phase of the epidemic cycle, parasites become increasingly aggregated in the host population, presumably because of the direct reproduction of the parasite on the surface of a single host. As the peak prevalance and abundance are approached, the parasites become less aggregated with lowest clumping occurring during the declining phase of the cycle. This is thought to be a function of density-dependent death of infected hosts, and density-dependent reduction in parasite survival and reproduction on hosts that recover from infection. This study clearly indicates that the variance to mean ratio and the parameter k of the negative binomial distribution do not quantify the same aspect of the frequency distribution. It is suggested that the variance to mean ratio is a better measure when the prevalence and/or mean burden are changing and when the tail of the distribution is of particular interest, and that k may be a preferred parameter when the zero class or the lightly infected hosts are of primary interest.

Animals↗

Potato aphid, Macrosiphum euphorbiae (Thomas), in tomatoes: plant canopy distribution and binomial sampling on processing tomatoes in California.

A binomial sampling method for the potato aphid, Macrosiphum euphorbiae (Thomas), on processing tomato plants, Lycopersicon esculentum (Mill), is proposed. Relationships between mean number of M. euphorbiae per leaf and proportion of leaves infested [P(I)] with M. euphorbiae for both upper and interior leaves of the processing tomato varieties 'Alta' and 'Halley' are presented. A split-plot design was used with variety, position in the plant canopy, and block as the factors examined through linear regression and analysis of variance (ANOVA). Results supported the hypotheses that M. euphorbiae densities on upper canopy leaves are predictive of densities on inner canopy leaves and that proportion of M. euphorbiae infested leaves are predictive of mean densities per leaf. Mean M. euphorbiae density was greater on 'Alta' than 'Halley' tomato plants, supporting the assumption that 'Alta' is the more susceptible variety. Taylor's Power Law coefficients, a and b, were similar for proportion of M. euphorbiae-infested upper and inner leaves of both 'Alta' and 'Halley'. Taylor's b coefficients ranged from 1.57 to 1.74, indicating a highly clumped distribution for M. euphorbiae.

Animals↗

Design and performance of statistical process control charts applied to estrous detection efficiency.

Statistical process control (SPC) charts to monitor production processes have not been widely used in dairy management. Shewhart and cumulative sum (cusum) control charts were designed to determine true changes in estrous detection efficiency (EDE) amidst normal variation in dairy cattle. A stochastic simulation model was used to track performance over time of individual cows in herds of 100 and 1000 cows. Estrous detection ratios (EDR), calculated as observed estruses divided by estimated estrous days (in periods of 1 to 60 d), were used to monitor EDE. Control charts for EDR, using normal and binomial distributions, were designed at 0.65 EDE for both herd sizes; then EDE was set to 0.65 (no change), 0.55, 0.45, or 0.35 and average days to the first detection signal (ATS) in 400 runs was determined. Observed ATS at 0.65 EDE could differ from the target ATS, depending on the SPC chart design and estimated proportions of estrous days for inseminated cows. Observed ATS were shorter for larger changes in EDE and for the 1000-cow herd. Observed ATS for a change to 0.55 EDE were approximately 300 d (100 cows) or 60 d (1000 cows) with the cusum charts. For a change to 0.35 EDE, observed ATS were approximately 50 d (100 cows) and approximately 11 d (1000 cows). Shewhart charts performed similarly or took longer to signal changes depending on period length. Observed ATS on cusum charts were much longer than minimum when non-optimal reference values were used in the design. Observed ATS were also longer when SPC charts were designed with a longer target ATS and change in EDE was small. Control charts using normal and binomial distributions generally performed similarly. Statistical process control charts detected changes in estrous detection efficiency soon enough to be potentially useful in dairy management.

Animals↗

No interspecific covariation in intensities of macroparasites of reindeer, Rangifer tarandus (L.).

The macroparasites Cephenemyia trompe (Modeer) and Hypoderma (= Oedemagena) tarandi (L.) (Diptera: Oestridae), Linguatula arctica Riley, Haugerud and Nilssen (Pentastomida: Linguatulidae), Elaphostrongylus rangiferi Mitskevich (Nematoda: Protostrongylidae), and abomasal nematodes (Nematoda: Trichostrongylidae) were sampled in semidomestic reindeer calves (Rangifer tarandus (L.)) (ca. 8 months of age) in northern Norway in 1988 (n = 160) and 1989 (n = 191). Each parasite showed an aggregated (clumped) distribution among the hosts and fitted the negative binomial distribution. Analyses of interspecific associations in intensities showed that there was no consistent covariation among the parasites apart from a weak correlation (Kendall's tau 0.104, P = 0.007) between the 2 oestrids C. trompe and H. tarandi. This lack of covariation reveals that the parasites were distributed independently of each other, and suggests that innate host resistance is not a dominant factor that has a significant simultaneous effect on all parasites. The aggregated distribution of each parasite species is hypothesized to be caused by (1) random events and heterogeneities in host behaviour that create unequal transmission (exposure) rates, or (2) by heterogeneities in parasite specific immunocompetence among host individuals. Factors in hypothesis (1) are probably the most important at low transmission rates.

Abomasum↗

Statistical methods for analysing discrete and categorical data recorded in performance analysis.

In this paper, we identify appropriate statistical methods for analysing categorical differences in discrete variables or 'performance indicators' resulting from performance analysis. The random mechanisms associated with discrete events do not follow a normal distribution; that is, the normal distribution is a continuous not a discrete probability distribution. We propose appropriate statistical methods based on two key discrete probability distributions, the Poisson and binomial distributions. Two approaches are proposed and compared using examples from notational analysis. The first approach is based on the classic chi-square test of significance (both the goodness-of-fit test and the test of independence). The second approach adopts a more contemporary method based on log-linear and logit models fitted using the statistical software GLIM. Provided relatively simple one-way and two-way comparisons in categorical data are required, both of these approaches result in very similar conclusions. However, as soon as more complex models or higher-order comparisons are required, the approach based on log-linear and logit models is shown to be more effective. Indeed, when investigating those factors and categorical differences associated with binomial or binary response variables, such as the proportion of winners when attempting decisive shots in squash or the proportion of goals scored from all shots in association football, logit models become the only realistic method available. By applying log-linear and logit models to discrete events resulting from notational analysis, greater insight into the underlying mechanisms associated with sport performance can be achieved.

Humans↗

Optimal Bayesian foraging policies and prey population dynamics-some comments on Rodriguez-Girones and Vasquez.

In this paper we show the density-dependent harvest rates of optimal Bayesian foragers exploiting prey occurring with clumped spatial distribution. Rodríguez-Gironés and Vásquez (1997) recently treated the issue, but they used a patch-leaving rule (current value assessment rule) that is not optimal for the case described here. An optimal Bayesian forager exploiting prey whose distribution follows the negative binomial distribution should leave a patch when the potential (and not instantaneous) gain rate in that patch equals the best long-term gain rate in the environment (potential value assessment rule). It follows that the instantaneous gain rate at which the patches are abandoned is an increasing function of the time spent searching in the patch. It also follows that the proportion of prey harvested in a patch is an increasing sigmoidal function of the number of prey initially present. In this paper we vary several parameters of the model to evaluate the effects on the forager's intake rate, the proportion of prey harvested per patch, and the prey's average mortality rate in the environment. In each case, we study an intake rate maximizing forager's optimal response to the parameter changes. For the potential value assessment rule we find that at a higher average prey density in the environment, a lower proportion of the prey is taken in a patch with a given initial prey density. The proportion of prey taken in a patch of a given prey density also decreases when the variance of the prey density distribution is increased and if the travel time between patches is reduced. We also evaluate the effect of using predation minimization, rather than rate maximization, as the currency. Then a higher proportion of the prey is taken for each given initial prey density. This is related to the assumption that traveling between patches is the most risky activity. Compared to the optimal potential value assessment rule, the current value assessment rule performs worse, in terms of long-term intake rate achieved. The difference in performance is amplified when prey density is high or highly aggregated. These results pertain to the foraging patch spatial scale and may have consequences for the spatial distribution of prey in the environment.

Animals↗

Unhappiness and dissatisfaction in doctors cannot be predicted by selectors from medical school application forms: a prospective, longitudinal study.

BACKGROUND: Personal statements and referees' reports are widely used on medical school application forms, particularly in the UK, to assess the suitability of candidates for a career in medicine. However there are few studies which assess the validity of such information for predicting unhappiness or dissatisfaction with a career in medicine. Here we combine data from a long-term prospective study of medical student selection and training, with an experimental approach in which a large number of assessors used a paired comparison technique to predict outcome. METHODS: Data from a large-scale prospective study of students applying to UK medical schools in 1990 were used to identify 40 pairs of doctors, matched by sex, for whom personal statements and referees' reports were available, and who in a 2002/3 follow-up study, one pair member was very satisfied and the other very dissatisfied with medicine as a career. In 2005, 96 assessors, who were experienced medical school selectors, doctors, medical students or psychology students, used information from the doctors' original applications to judge which member of each pair of doctors was the happier, more satisfied doctor. RESULTS: None of the groups of assessors were significantly different from chance expectations in using applicants' personal statements and the referees' reports to predict actual future satisfaction or dissatisfaction, the distribution being similar to binomial expectations. However judgements of pairs of application forms from pairs of doctors showed a non-binomial distribution, indicating consensus among assessors as to which doctor would be the happy doctor (although the consensus was wrong in half the cases). Assessors taking longer to do the task concurred more. Consensus judgements seem mainly to be based on referees' predictions of academic achievement (even though academic achievement is not actually a valid predictor of happiness or satisfaction). CONCLUSION: Although widely used in medical student selection to assess motivation, interest and commitment to a medical career, the personal statement and the referee's report cannot validly be used by assessors, including experienced medical school selectors, to identify doctors who will subsequently be dissatisfied with a medical career.

Adult↗

[The nature of intelligence in adults with Down syndrome: IQ distribution and sex differences].

Normative data on intelligence in adults with Down syndrome was collected on 93 males and 80 females, aged 16 years and above, who had been given the Suzuki-Binet Intelligence Scale. Both the male and female groups showed bimodal curves in the distributions of IQs. Only for the low IQ groups, the distributions were defined by binomial distributions. The mean ages of starting to walk for the low IQ groups were six months or more later than those for the high IQ groups. However, no significant differences were observed in birthweights, terms of pregnancy, and ages between the two groups. In addition, significant sex differences were found in mean IQs, females scored higher in both the two groups.

Adolescent↗

[Use of various accordance measures in the study of sick leave frequency distribution per man-year].

In the studies of a wide number of phenomena very often an attempt to describe their distributions with the help of certain theoretical distributions is undertaken. Pearson's chi2 and Kolmogorovs lambda traditional tests, when applied to the evaluation of accordance between the empirical distribution and the distribution calculated on the basis of theoretical probability function, depend directly on the dimensions of population studied, and they are not useful in the case of big quantities. In the paper the author presents a great number of measures for two (empirical and theoretical) distributions accordance and their application to the study of sick-leave frequency distribution per man per year. On the basis of received results a high level of distributions accordance between the sick leave cases distribution and the negative binomial distribution has been observed. The distribution of sick leave shows a high accordance with the logarithmically-normal distribution. In the light of the above mentioned distribution study, the imperfection of Pearson's chi2 and Kolmogorov's lambda tests can be ascertained. In the case of big quantities the evaluation of distributions accordance seems to require the application of the accordance measures based on relative quantities.

Absenteeism↗

High heterogeneity in the number of Plasmodium falciparum gametocytes in the bloodmeal of mosquitoes fed on the same host.

To investigate the quantitative distribution of Plasmodiumfalciparum gametocytes into the vector bloodmeal, Anopheles arabiensis mosquitoes were fed on 3 volunteers naturally infected with gametocytes. The content of each mosquito midgut was smeared on a microscope slide and Giemsa stained. The distribution of gametocytes ingested by mosquitoes followed a negative binomial distribution, with apparently constant overdispersion (parameter k +/- S.E. = 3.105 +/- 0.392) for the 3 series. This aggregation of gametocytes in some midguts probably facilitates the conjunction of gametes and fertilization. This suggests that P. falciparum gametocytes in the peripheral blood flow of infected man do not follow an independent, homogeneous pattern but show a significant aggregation.

Adult↗

Relationship between prevalence and intensity of Plasmodium falciparum infection in natural populations of Anopheles mosquitoes.

Wild-caught Anopheles gambiae s. l. and An. funestus were dissected and their midguts were examined for the presence of Plasmodium falciparum oocyst infections. The mean intensity of infection and the prevalence of infected mosquitoes were determined for each sample, with one sample representing the mosquitoes caught in a single house at any given time. The patterns of infection were investigated using the relationships between prevalence, intensity, and variance within samples, and were found to be consistent with laboratory infections. The overall distribution of oocysts is characterized by a mixture of negative binomial distributions with means determined by the infectiousness of the human hosts, and a constant degree of aggregation (k = 0.0767) presumably determined by the development of oocysts within mosquitoes. The prevalence/intensity relationship was treated as a bivariate distribution to ascertain the effect of sample size on the accuracy of estimation, and to allow inference of intensity from prevalence. In mathematical models fitted to the collected data, sample size affected directly the minimum possible prevalence of infection, and the accuracy of both mean and prevalence estimations. Based on minimum possible positive prevalence rates, data from samples of less than 20-25 mosquitoes would provide unacceptable errors in prevalence estimations. However, natural oocyst rates are consistently higher than the minimum prevalence, and it is suggested that any interpretations from samples of less than approximately 40 mosquitoes must be treated with some caution. Such variation in natural samples means that prediction of intensity of infection from prevalence (or vice versa) is extremely inaccurate.

Animals↗

[Monitoring microbiological safety of small systems of water distribution. Comparison of two sampling programs in a town in central Italy].

OBJECTIVE: To determine the frequency of sampling in small water distribution systems (<5,000 inhabitants) and compare the results according to different hypotheses in bacteria distribution. DESIGN AND SETTING: We carried out two sampling programs to monitor the water distribution system in a town in Central Italy between July and September 1992; the Poisson distribution assumption implied 4 water samples, the assumption of negative binomial distribution implied 21 samples. Coliform organisms were used as indicators of water safety. The network consisted of two pipe rings and two wells fed by the same water source. The number of summer customers varied considerably from 3,000 to 20,000. RESULTS: The mean density was 2.33 coliforms/100 ml (sd= 5.29) for 21 samples and 3 coliforms/100 ml (sd= 6) for four samples. However the hypothesis of homogeneity was rejected (p-value <0.001) and the probability of II type error with the assumption of heterogeneity was higher with 4 samples (beta= 0.24) than with 21 (beta= 0.05). CONCLUSION: For this small network, determining the samples' size according to heterogeneity hypothesis strengthens the statement that water is drinkable compared with homogeneity assumption.

Binomial Distribution↗

Statistical evaluation for detection of peptide specific interferon-gamma secreting T-cells induced by HIV vaccine determined by ELISPOT assay.

Interferon-gamma (IFN-gamma) secreting T-cells play an important role in immunodeficiency virus (HIV) disease pathogenesis. A common technique to determine the efficacy of the HIV vaccines in murine models is to compare the number of IFN-gamma secreting T-cells induced by HIV vaccine to a control group. The measurement of IFN-gamma secreting T-cells relies on an ELISPOT assay. This assay is carried out in triplicate wells from the same mouse on the same ELISPOT plate. The numbers of spot forming cells (SFC) from these wells are correlated counts. Traditionally, simple statistical methods, such as ANOVA or Kruskall-Wallis tests, are performed on means by mouse. These approaches ignore the fact that the data are correlated counts. Count data are usually assumed to follow the Poisson distribution. However, some count data exhibit overdispersion that can affect the test statistics. The negative binomial distribution is an alternative to the Poisson distribution in the presence of overdispersion. Hence, negative binomial regression is a more suitable approach for overdispersed count data. In this study, we used a negative binomial regression to determine that IL-12 was a good adjuvant. The results of the study using a negative binomial regression are discussed.

AIDS Vaccines↗

Relation between structural and release parameters at the frog sensory-motor synapse.

The sensory-motor synaptic connexions in the frog lumbar cord have been used to examine the relationship between the statistical characteristics of the unitary excitatory post-synaptic potential (e.p.s.p.) and the number and organization of synaptic contacts determined when the primary afferent fibre used in evoking the e.p.s.p., and a motoneurone in which it was recorded, were both labelled with horseradish peroxidase (HRP). A significant correlation is found between the number of contacting boutons and the amplitude of the chemical component of the unitary e.p.s.p.s generated at the same connexions. The amplitude fluctuation patterns of the single-fibre e.p.s.p.s could be fitted by both Poisson and binomial distribution. The number of presumed Poisson release sites as estimated from the ratio Vmax/v (where Vmax is the maximal amplitude of the chemical component of e.p.s.p. and v is quantal size) is always less than or equal to the total number of boutons observed histologically. In three connexions there was a close correspondence between the number of binomial release units, n, and the number of contact regions formed by the tight clusters of contacting boutons. The unit potential amplitude estimated from the Poisson distribution is found to be two to three times smaller than the quantal size calculated from binomial distribution. A similar numerical relationship was found between the number of contacting boutons and the number of contact regions. It is suggested that at a single bouton, transmission results in release of a single quantum of transmitter, whereas the binomial quantum probably reflects the multi-quantal release occurring simultaneously at boutons comprising a contact region. A significant correlation is found between the mean quantum content estimated either from Poisson or binomial distribution and the number of contacting boutons and contact regions respectively, indicating the dependence of quantal release on the magnitude of synaptic surface. No correlation is found between the motoneuronal soma diameter and the quantal size, although the former is significantly correlated with the number of contacting boutons.

Action Potentials↗

[Estimation of vector prevalence by using pool sampling].

AIM: To investigate theoretically the feasibility of the pool sampling method in estimating the vector prevalence. METHODS: The probability distribution of infected individuals in a given pool was analyzed using binomial distribution, based upon the upper limit of predicted vector infectivity. The maximal pool size was determined in case that the probability of only one infected individual within this positive pool is larger than a predetermined significance level, in this way infection rate is estimated by the number of positive pools and the judgment of predicted prevalence was addressed by the threshold of positive pool ratio. RESULTS: In comparison with the pool sampling based on the positive pool ratio the method suggested in the present paper poses a variance and precision of estimates independent on pool sizes although it requires a predicted prevalence to determine the maximal pool size. In situations of limited samples and a high prevalence this pooling method has higher estimation efficiency. CONCLUSION: Theoretically the estimation of vector prevalence using pooling methods is feasible. The estimation based on positive pool ratio is suitable for situations of lacking epidemiological data and rough precision estimation, whereas the method based on the maximum pool size provides more accurate estimates and needs a prior predicted infection rate.

Animals↗

Togetherness among Plasmodium falciparum gametocytes: interpretation through simulation and consequences for malaria transmission.

Previous experimental gametocyte infections of Anopheles arabiensis on 3 volunteers naturally infected with Plasmodium falciparum were conducted in Senegal. They showed that gametocyte counts in the mosquitoes are, like macroparasite intakes, heterogeneous (overdispersed). They followed a negative binomial distribution, the overdispersion coefficient seeming constant (k = 3.1). To try to explain this heterogeneity, we used an individual-based model (IBM), simulating the behaviour of gametocytes in the human blood circulation and their ingestion by mosquitoes. The hypothesis was that there exists a clustering of the gametocytes in the capillaries. From a series of simulations, in the case of clustering the following results were obtained: (i) the distribution of the gametocytes ingested by the mosquitoes followed a negative binomial, (ii) the k coefficient significantly increased with the density of circulating gametocytes. To validate this model result, 2 more experiments were conducted in Cameroon. Pooled experiments showed a distinct density dependency of the k-values. The simulation results and the experimental results were thus in agreement and suggested that an aggregation process at the microscopic level might produce the density-dependent overdispersion at the macroscopic level. Simulations also suggested that the clustering of gametocytes might facilitate fertilization of gametes.

Aedes↗