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PubMed2001

Tooth preparations for complete crowns: an art form based on scientific principles.

STATEMENT OF THE PROBLEM: No recent literature has reviewed the current scientific knowledge on complete coverage tooth preparations. PURPOSE: This article traces the historic evolution of complete coverage tooth preparations and identifies guidelines for scientific tooth preparations. MATERIAL AND METHODS: Literature covering 250 years of clinical practice was reviewed with emphasis on scientific data acquired during the last 50 years. Both a MEDLINE search and an extensive manual search were used to locate relevant articles written in English in the last 50 years. RESULTS: Teeth should be prepared so that they exhibit the following characteristics: 10 to 20 degrees of total occlusal convergence, a minimal occlusocervical dimension of 4 mm for molars and 3 mm for other teeth, and an occlusocervical-to-faciolingual dimension ratio of 0.4 or greater. Facioproximal and linguoproximal line angles should be preserved whenever possible. When the above features are missing, the teeth should be modified with auxiliary resistance features such as axial grooves or boxes, preferably on proximal surfaces. Finish line selection should be based on the type of crown/retainer, esthetic requirements, ease of formation, and personal experience. Expectations of enhanced marginal fit with certain finish lines could not be validated by recent research. Esthetic requirements and tooth conditions determine finish line locations relative to the gingiva, with a supragingival location being more acceptable. Line angles should be rounded, and a reasonable degree of surface smoothness is desired. CONCLUSIONS: Nine scientific principles have been developed that ensure mechanical, biologic, and esthetic success for tooth preparation of complete coverage restorations.

Bicuspid↗

PubMed2000

Evolutionary dynamics of self-incompatibility alleles in Brassica.

Self-incompatibility in Brassica entails the rejection of pollen grains that express specificities held in common with the seed parent. In Brassica, pollen specificity is encoded at the multipartite S-locus, a complex region comprising many expressed genes. A number of species within the Brassicaceae express sporophytic self-incompatibility, under which individual pollen grains bear specificities determined by one or both S-haplotypes of the pollen parent. Classical genetic and nucleotide-level analyses of the S-locus have revealed a dichotomy in sequence and function among S-haplotypes; in particular, all class I haplotypes show dominance over all class II haplotypes in determination of pollen specificity. Analysis of an evolutionary model that explicitly incorporates features of the Brassica system, including the class dichotomy, indicates that class II haplotypes may invade populations at lower rates and decline to extinction at higher rates than class I haplotypes. This analysis suggests convergence to an evolutionarily persistent state characterized by the maintenance in high frequency of a single class II haplotype together with many class I haplotypes, each in low frequency. This expectation appears to be consistent with empirical observations of high frequencies of relatively few distinct recessive haplotypes.

Alleles↗

PubMed2006

Divergence and redundancy of transport and metabolic rate-yield strategies in a single Escherichia coli population.

The energetic efficiency of nutrient uptake and conversion into biomass is a key factor in the ecological behavior of microorganisms. The constraints shaping the metabolic rate-yield trade-off in bacteria are not well understood. To examine whether metabolic rate-yield settings and physiological strategies evolve toward a particular optimum in a constant environment, we studied multiple Escherichia coli isolates evolving in a glucose-limited chemostat population. A major divergence in transport and metabolic strategies was observed, and the isolates included inefficient rate strategists (polluters or cheaters) and yield strategists (conservationists), as well as various hybrid rate-yield strategists and alternative ecotypes (dropouts). Sugar transport assays, strain comparisons based on metabolomics, and Biolog profiling revealed variance to the point of individuality within an evolving population. Only 68 of 177 metabolites assayed were not affected in 10 clonally related strains. The parallel enrichment of rate and yield strategists and the divergence in metabolic phylogenies indicate that bacteria do not converge on a particular rate-yield balance or unique evolutionary solutions. Redundancies in transport and metabolic pathways are proposed to have laid the framework for the multiplicity of bacterial adaptations.

Adaptation, Physiological↗

PubMed2002

Genetic programming over context-free languages with linear constraints for the knapsack problem: first results.

In this paper, we introduce genetic programming over context-free languages with linear constraints for combinatorial optimization, apply this method to several variants of the multidimensional knapsack problem, and discuss its performance relative to Michalewicz's genetic algorithm with penalty functions. With respect to Michalewicz's approach, we demonstrate that genetic programming over context-free languages with linear constraints improves convergence. A final result is that genetic programming over context-free languages with linear constraints is ideally suited to modeling complementarities between items in a knapsack problem: The more complementarities in the problem, the stronger the performance in comparison to its competitors.

Combinatorial Chemistry Techniques↗

PubMed2004

The Evolution of SINEs and LINEs in the genus Chironomus (Diptera).

Genomic DNA amplification from 51 species of the family Chironomidae shows that most contain relatives of NLRCth1 LINE and CTRT1 SINE retrotransposons first found in Chironomus thummi. More than 300 cloned PCR products were sequenced. The amplified region of the reverse transcriptase gene in the LINEs is intact and highly conserved, suggesting active elements. The SINEs are less conserved, consistent with minimal/no selection after transposition. A mitochondrial gene phylogeny resolves the Chironomus genus into six lineages (Guryev et al. 2001). LINE and SINE phylogenies resolve five of these lineages, indicating their monophyletic origin and vertical inheritance. However, both the LINE and the SINE tree topologies differ from the species phylogeny, resolving the elements into "clusters I-IV" and "cluster V" families. The data suggest a descent of all LINE and SINE subfamilies from two major families. Based on the species phylogeny, a few LINEs and a larger number of SINEs are cladisitically misplaced. Most misbranch with LINEs or SINEs from species with the same families of elements. From sequence comparisons, cladistically misplaced LINEs and several misplaced SINEs arose by convergent base substitutions. More diverged SINEs result from early transposition and some are derived from multiple source SINEs in the same species. SINEs from two species (C. dorsalis, C. pallidivittatus), expected to belong to the clusters I-IV family, branch instead with cluster V family SINEs; apparently both families predate separation of cluster V from clusters I-IV species. Correlation of the distribution of active SINEs and LINEs, as well as similar 3' sequence motifs in CTRT1 and NLRCth1, suggests coevolving retrotransposon pairs in which CTRT1 transposition depends on enzymes active during NLRCth1 LINE mobility.

Animals↗

PubMed1984

A family of dispersed repetitive extragenic palindromic DNA sequences in E. coli.

We report the properties of 67 members of a family of dispersed repetitive palindromic extragenic bacterial DNA sequences. These sequences, called palindromic units, appear to be present at least several hundred times outside structural genes on the Escherichia coli chromosome. They are found either in clusters - as in a previously described intercistronic element - or in single occurrences. They are not only found within an operon but also between different operons, including between convergent ones. The palindromic units could yield a stem and loop structure at the level of DNA or RNA. The base of the stem is made of eight remarkably conserved base pairs while the rest varies somewhat in length and sequence. We analyse the data available on the palindromic units and we speculate on their possible roles with emphasis on transcription and mRNA stability or processing, as well as on their possible relation to transposition elements and the modular evolution of the genome.

Base Sequence↗

PubMed1996

Autoprotective mechanisms in the CNS: some new lessons from white matter.

Anoxia/ischemia in the CNS is a common and devastating phenomenon. It is possible that the best hopes for protection against anoxic/ischemic injury may involve recruiting and/or augmenting any autoprotective systems that evolution has provided for the CNS. We describe here the existence of such an autoprotective system present in CNS white matter. White matter is both well suited to studying extrasynaptic systems, such as the system we describe here, and is a highly appropriate target for research into anoxic-ischemic injury in its own right. We show that white matter contains functional GABAB and adenosine receptors that respond to an anoxic efflux of GABA and adenosine by recruiting a convergent intracellular mechanism involving protein kinase C (PKC). The net result of this receptor-mediated cascade is an increase in resistance to anoxia, which presumably allows CNS white matter to tolerate better a common class of ischemic events that are located solely in white matter and that comprises approximately 25% of all strokes seen clinically.

Animals↗

PubMed2006

Direct observation of laser filamentation in high-order harmonic generation.

We investigate the spatial evolution of a laser pulse used to generate high-order harmonics (orders ranging from 45 to 91) in a semi-infinite helium-filled gas cell. The 5 mJ, 30 fs laser pulses experience elongated focusing with two distinct waists when focused with f/125 optics in 80 Torr of helium. Extended phase matching for the generation of harmonics occurs in the region between the double foci of the laser, where the laser beam changes from diverging to converging.

Journal Article↗

PubMedDate not supplied

On the probability of a common origin for tRNA and 5S rRNA.

As part of a continuing study on the origin of genetic coding and the process of protein synthesis, we have compared sequences of a large number of transfer RNAs and several 5S ribosomal RNAs using automated routines. Transfer RNAs were found to exhibit a high degree of matching with 5S rRNAs. These matches are considered to be indicative of sequence homology, reflecting common ancestry of the two molecules. Other possible explanations for the matches (convergence, transfection) are discussed and found to be highly implausible. Matches are also found between 5S rRNA and the introns of yeast precursor tRNAs. Many matches extend from before the 3' end to after the 5' end of circularized 5S rRNA sequences. Data is presented which indicates a tandemly duplicated or circular molecule could have served as the precursor to both 5S rRNA and tRNA. A derivative of this molecule may have functioned as a universal translator before the evolution of the highly specialized tRNAs.

Animals↗

PubMedDate not supplied

[Convergent origin of repeats in genes coding for globular proteins. An analysis of the factors determining the presence of inverted and symmetrical repeats].

The factors, determining the presence of inverted and symmetrical repeats in genes coding for globular proteins, have been analysed. An interesting property of genetical code has been revealed in the analysis of symmetrical repeats: the pairs of symmetrical codons corresponded to pairs of amino acids with mostly similar physical-chemical parameters. This property may explain the presence of symmetrical repeats and palindromes only in genes coding for beta-structural proteins-polypeptides, where amino acids with similar physical-chemical properties occupy symmetrical positions. A stochastic model of evolution of polynucleotide sequences has been used for analysis of inverted repeats. The modelling demonstrated that only limiting of sequences (uneven frequencies of used codons) is enough for arising of nonrandom inverted repeats in genes.

Amino Acid Sequence↗

PubMed2001

Gecko vision--retinal organization, foveae and implications for binocular vision.

Geckos comprise both nocturnal and diurnal genera, and between these categories there are several transitions. As their retinae have definitely to be classified as pure cone retinae, they provide an especially attractive model for comparison of organization and regional specializations adapted to very different photic environments. While the visual cells themselves show clear adaptations to nocturnal or diurnal lifestyles, the overall retinal organization is more related to that of diurnal vertebrates. Nocturnal geckos have lost any foveae of their diurnal ancestors, but they have retained a low convergence ratio and a high visual cell density. To enhance visual sensitivity, they exploit binocular - but not necessarily stereoscopic - vision. Diurnal species have retained binocular vision. Most diurnal species have developed new foveae, which are consequently located not in the central but in the temporal region of the retina.

Animals↗

PubMed2003

Duplication of primate and rodent B7-H3 immunoglobulin V- and C-like domains: divergent history of functional redundancy and exon loss.

B7-H3 is a novel protein structurally related to the B7 family of ligands by the presence of a single set of immunoglobulin-V-like and immunoglobulin-C-like (VC) domains. By multiplex PCR, the dominantly expressed form of human B7-H3 was found to be a splice variant containing tandemly duplicated VC domains (VCVC). In contrast, mouse B7-H3 cDNA contained only one single VC form due to an exon structure corresponding to V-(pseudoexon C)-(pseudoexon V)-C. Comparisons of human, monkey, mouse, and hamster genomic B7-H3 reveal that primates, but not rodents, exhibited a higher degree of intramolecular sequence similarity between VC duplications than between molecules. Both VC and VCVC forms of human B7-H3 inhibited CD4(+) T cell proliferation and downregulated cytokine production upon TCR activation. These results suggest independent, but convergent, paths of B7-H3 active domain duplication followed by divergent histories of exon degeneration in rodents and exon maintenance by humans.

Alternative Splicing↗

PubMed2005

The hierarchical fair competition (HFC) framework for sustainable evolutionary algorithms.

Many current Evolutionary Algorithms (EAs) suffer from a tendency to converge prematurely or stagnate without progress for complex problems. This may be due to the loss of or failure to discover certain valuable genetic material or the loss of the capability to discover new genetic material before convergence has limited the algorithm's ability to search widely. In this paper, the Hierarchical Fair Competition (HFC) model, including several variants, is proposed as a generic framework for sustainable evolutionary search by transforming the convergent nature of the current EA framework into a non-convergent search process. That is, the structure of HFC does not allow the convergence of the population to the vicinity of any set of optimal or locally optimal solutions. The sustainable search capability of HFC is achieved by ensuring a continuous supply and the incorporation of genetic material in a hierarchical manner, and by culturing and maintaining, but continually renewing, populations of individuals of intermediate fitness levels. HFC employs an assembly-line structure in which subpopulations are hierarchically organized into different fitness levels, reducing the selection pressure within each subpopulation while maintaining the global selection pressure to help ensure the exploitation of the good genetic material found. Three EAs based on the HFC principle are tested - two on the even-10-parity genetic programming benchmark problem and a real-world analog circuit synthesis problem, and another on the HIFF genetic algorithm (GA) benchmark problem. The significant gain in robustness, scalability and efficiency by HFC, with little additional computing effort, and its tolerance of small population sizes, demonstrates its effectiveness on these problems and shows promise of its potential for improving other existing EAs for difficult problems. A paradigm shift from that of most EAs is proposed: rather than trying to escape from local optima or delay convergence at a local optimum, HFC allows the emergence of new optima continually in a bottom-up manner, maintaining low local selection pressure at all fitness levels, while fostering exploitation of high-fitness individuals through promotion to higher levels.

Algorithms↗

PubMed2005

Evaluating the epsilon-domination based multi-objective evolutionary algorithm for a quick computation of Pareto-optimal solutions.

Since the suggestion of a computing procedure of multiple Pareto-optimal solutions in multi-objective optimization problems in the early Nineties, researchers have been on the look out for a procedure which is computationally fast and simultaneously capable of finding a well-converged and well-distributed set of solutions. Most multi-objective evolutionary algorithms (MOEAs) developed in the past decade are either good for achieving a well-distributed solutions at the expense of a large computational effort or computationally fast at the expense of achieving a not-so-good distribution of solutions. For example, although the Strength Pareto Evolutionary Algorithm or SPEA (Zitzler and Thiele, 1999) produces a much better distribution compared to the elitist non-dominated sorting GA or NSGA-II (Deb et al., 2002a), the computational time needed to run SPEA is much greater. In this paper, we evaluate a recently-proposed steady-state MOEA (Deb et al., 2003) which was developed based on the epsilon-dominance concept introduced earlier(Laumanns et al., 2002) and using efficient parent and archive update strategies for achieving a well-distributed and well-converged set of solutions quickly. Based on an extensive comparative study with four other state-of-the-art MOEAs on a number of two, three, and four objective test problems, it is observed that the steady-state MOEA is a good compromise in terms of convergence near to the Pareto-optimal front, diversity of solutions, and computational time. Moreover, the epsilon-MOEA is a step closer towards making MOEAs pragmatic, particularly allowing a decision-maker to control the achievable accuracy in the obtained Pareto-optimal solutions.

Algorithms↗

PubMed1998

Phylogenetic congruence and discordance among one morphological and three molecular data sets from Pontederiaceae.

A morphological data set and three sources of data from the chloroplast genome (two genes and a restriction site survey) were used to reconstruct the phylogenetic history of the pickerelweed family Pontederiaceae. The chloroplast data converged towards a single tree, presumably the true chloroplast phylogeny of the family. Unrooted trees estimated from each of the three chloroplast data sets were identical or extremely similar in shape to each other and mostly robustly supported. There was no evidence of significant heterogeneity among the data sets, and the few topological differences seen among unrooted trees from each chloroplast data set are probably artifacts of sampling error on short branches. Despite well-documented differences in rates of evolution for different characters in individual data sets, equally weighted parsimony permits accurate reconstructions of chloroplast relationships in Pontederiaceae. A separate morphology-based data set yielded trees that were very different from the chloroplast trees. Although there was substantial support from the morphological evidence for several major clades supported by chloroplast trees, most of the conflicting phylogenetic structure on the morphology trees was not robust. Nonetheless, several statistical tests of incongruence indicate significant heterogeneity between molecules and morphology. The source of this apparent incongruence appears to be a low ratio of phylogenetic signal to noise in the morphological data.

Base Sequence↗

PubMed2003

Influence of attractive van der Waals interactions on the optimal excitations in thermocapillary-driven spreading.

Recent investigations of microfluidic flows have focused on manipulating the motion of very thin liquid films by modulating the surface tension through an applied streamwise temperature gradient. The extent to which the choice of contact line model affects the flow and stability of such thermocapillary-driven films is not completely understood. Regardless of the contact line model used, the linearized disturbance operator corresponding to the evolution of the film height is non-normal, and a generalized non-modal stability analysis is required. Surprisingly, early predictions of frontal instability that stemmed from conventional modal analysis of thermocapillary flow on a flat, infinite precursor film showed excellent agreement with experiment. Within the more rigorous framework provided by a generalized stability analysis, this work investigates the transient dynamics and amplification of optimal disturbances subject to a finite precursor film generated by attractive van der Waals forces. Convergence of the disturbance growth rates and perturbed shapes to the asymptotic solutions obtained by conventional linear stability analysis occurs early in the spreading process. In addition, the level of transient disturbance amplification is minimal. The equations governing thermocapillary-driven spreading exhibit a small degree of non-normality, which explains the source of agreement between modal theory and experiment. The more rigorous generalized stability analysis presented here, however, affords critical insight into the types of disturbances leading to maximum unstable growth and the exact influence of the contact line model used.

Journal Article↗

PubMed2006

Evolution of 'pollinator'- attracting signals in fungi.

Fungi produce a plethora of secondary metabolites yet their biological significance is often little understood. Some compounds show well-known antibiotic properties, others may serve as volatile signals for the attraction of insects that act as vectors of spores or gametes. Our investigations in an outcrossing, self-incompatible fungus show that a fungus-produced volatile compound with fungitoxic activities is also responsible for the attraction of specific insects that transfer gametes. We argue that insect attraction using this compound is likely to have evolved from its primary function of defence--as has been suggested for floral scent in the angiosperms. We, thus, propose that similar yet convergent evolutionary pathways have lead to interspecific communication signals in both fungi and plants.

Animals↗

PubMedDate not supplied

The evolution of the clinician-scientist model of neurological rehabilitation.

Over the past three or four decades two treatment technologies have been evolving in parallel, recently to some extent merging. The first of these technologies is behaviour analysis, with its emphasis on identification and manipulation of variables external to the individual as controlling agents. The second is neurological rehabilitation, with a characteristic focus of resources on recovery of function following neurological damage. The histories of both of these technologies are similar in that they emerged from basic laboratory research with non-human subjects, followed by extension of findings to research with humans, culminating in widespread formal application of results. The past 5 years have seen a convergence of behaviour analytic and neurological rehabilitation techniques resulting in major shifts in treatment service delivery systems. We briefly chronicle the emergence of these two technologies from their basic underpinnings through world-wide use. Further, discussion is provided describing our and others' experience with the combining of behaviour and neurological rehabilitation. Finally, we give an account of an innovative neurological rehabilitation service delivery system designed to deliver effective cost-efficient treatment in the patient's natural environment. Implicit in the design and implementation of this real-world model of rehabilitation is the combination of behavioural technology and neurological rehabilitation towards the achievement of functional outcomes which endure. Our purpose in the above is to provide an introduction to present use and future potential of behaviour analytic methodologies and technologies in rehabilitation.

Ambulatory Care↗