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The effects of depression and age on the Horne-Ostberg morningness-eveningness score.

Effects of depression and age on the Horne-Ostberg morningness-eveningness scale in human volunteers were assessed. Thirty-nine healthy outpatients with current DSM-IIIR depression, free of recent substance abuse or confounding medications, were compared to 39 age- and sex-matched controls. Patients reported greater 'eveningness' than controls (P = 0.014, Wilcoxon signed-ranks test). There was multimodality in the distribution of Horne-Ostberg scale scores in the depressed group, but a normal distribution in controls. Pearson's correlation of age vs. Horne-Ostberg score was positive (r = 0.42-0.55). Depression and age influence the Horne-Ostberg score. Potential multimodality of circadian phase in the depressed group deserves further study.

Adult↗

Occurrence and seasonal variation of alkylphenols in marine organisms from the coast of Taiwan.

The occurrence and distribution of alkylphenols (APs, i.e., 4-tert-octylphenol (4-t-OP) and 4-nonlyphenol isomers (4-NP)) in oysters (Crassostrea gigas), snails (Thais clavigera), coastal water and coastal sediments of the western coast of southern Taiwan are investigated. Alkylphenols were present in all matrices of interest: in water, ranging from 61 to 370 ng/l, in sediments, ranging from 27 to 190 ng/g, and in biota samples (i.e., oyster and snail), ranging from 20 to 5190 ng/g. Statistical analysis indicated that the probability distribution of most determined concentrations in oyster and snail samples was log-normal distribution. The bioaccumulation of APs resulted in a seasonal variation with respect to their compositions and concentrations in oyster and snail samples. For oysters, concentrations of APs in winter exceeded those in summer. In contrast, those in snails in summer exceeded those in winter. Estimated biomagnification factors of APs from snails to oysters ranged from 1.4 to 4.3 in summer, and 0.5 to 0.8 in winter on the dry weight basis. The results suggested that seasonally mediated physiological changes, such as dilution caused by growth, biotransformation and metabolism, may affect the bioaccumulation of APs in according to season and organism.

Animals↗

Effect of environmental parameters (temperature, pH and a(w)) on the individual cell lag phase and generation time of Listeria monocytogenes.

The effect of the individual environmental factors temperature (2-30 degrees C), pH (4.4-7.4) and a(w) (0.947-0.995) as well as the combinations of these factors on the individual cell lag phase and the generation time of Listeria monocytogenes was investigated. Individual cells were isolated using a serial dilution protocol in microtiter plates, and subsequent growth was investigated by optical density (OD) measurements at 600 nm. About 100 replicates were made for each set of environmental conditions. Part of the data were previously published in Francois et al. (Francois, K., Devlieghere, F., Smet, K., Standaert, A.R., Geeraerd, A.H., Van Impe, J.F., Debevere, J., 2005a. Modelling the individual cell lag phase: effect of temperature and pH on the individual cell lag distribution of Listeria monocytogenes. Int. J. Food Microbiol. 100, 41-53.), but were recalculated here using the calibration curves for transformation of optical density to colony forming units/ml from Francois et al. (Francois, K., Devlieghere, F., Standaert, A.R., Geeraerd, A.H., Cools, I., Van Impe, J.F., Debevere, J., 2005b. Environmental factors influencing the relationship between optical density and cell count for Listeria monocytogenes. J. Appl. Microbiol. 99, 1503-1515), as this calibration curve appeared to be dependent on the environmental parameters. The previous dataset was also extended with a factor a(w), observed individually and combinations with the above mentioned environmental factors. Individual cell lag phases and subsequent growth rates were calculated assuming an exponential growth model. The results are discussed as mean values to determine the general trends and in addition, histograms are made and statistical distributions are fitted to the different data sets. When stress levels increased, the mean values and the variability observed for the individual cell lag phases increased, resulting in broader histograms and distributions that were shifting to the right. Also the gravity point of the distributions was shifting from a skewed left type to a more symmetrical type. The best description of the data is obtained with an exponential distribution for low stress levels, a gamma distribution for intermediate stress and a Weibull distribution for severe stress levels. When only low stress levels were applied, a significant percentage of the cells showed no lag phase. In those cases, a new approach was used to obtain better fits: cells with a lag phase and those without a lag phase were separated using a binomial distribution while in a second step, a gamma or a Weibull distribution is fitted to the fraction of cells showing a lag phase. A normal distribution is used to describe the variability of the generation times. These distributions can be applied to refine the exposure assessment part of the risk assessment concerning L. monocytogenes by incorporating intercellular variability.

Colony Count, Microbial↗

Thiopurine methyltransferase activity in a Korean population sample of children.

Thiopurine methyltransferase (TPMT) is a cytoplasmic enzyme that catalyzes the S-methylation of the cytotoxic drugs 6-mercaptopurine and azathioprine. Red blood cell (RBC) TPMT activity is subject to genetic polymorphism, and we have previously demonstrated an interethnic difference in TPMT activity. To investigate whether there was a race-related difference in RBC TPMT activity, TPMT was measured in a Korean population sample of 309 healthy children. Mean TPMT activity in healthy Korean children was 12.4 +/- 2.4 units/ml RBC, which is similar to the earlier reported TPMT activities in white populations. In contrast to the bimodal or trimodal frequency distributions of RBC TPMT activity in most other population samples, the frequency distribution histogram, the probit plot, and the Shapiro-Wilk test supported a normal distribution of TPMT activity in this Korean population sample of healthy children. Mean RBC TPMT activity showed a tendency to decrease with age, but it was not statistically significant. No gender-related difference in RBC TPMT activity was found.

Age Factors↗

Relationship between blood uric acid level and personality traits.

The present study deals with the relationship between blood uric acid level and human behavior. Subjects were 37 MZ and 7 DZ twins aged from 18 to 45 years. In males, blood uric acid level increased with age, while it decreased with age in females. Blood uric acid level was corrected and standardized using regression lines separately for males and females. The distribution of standardized uric acid level corresponded well with the theoretical curve of normal distribution. The intraclass correlation coefficient for standardized uric acid level was r = 0.370 (P less than 0.05) for the 37 MZ twins, but not significant for the 7 DZ twins. These findings suggest that blood uric acid level is genetically controlled. By the analysis of 12 personality traits in YG (Yatabe-Guilford) character test, it was revealed that "General activity" was more controlled by genetically than environmentally. In the evaluation of the correlation between standardized uric acid level and the YG 12 personality traits, significant correlation was observed in "Lack of agreeableness" and "Rhathymia". Since these two personality traits include the factor of "activity", it is concluded that the plasma uric acid level and activity in a broader sense are under genetic control. This conclusion is consistent with the generally accepted view that persons with high uric acid level are more active and energetic than those with low level.

Adult↗

Determination of the water droplet size distribution of fat spreads using confocal scanning laser microscopy.

Knowledge of the water droplet size distribution of fat spreads is necessary for the development and production of high quality microbiological safe products. Fat spreads are water-in-oil emulsions. The water droplet size distribution can be determined by confocal scanning laser microscopy (CSLM) after staining the fat with Nile Red. The profiles of the non-fluorescent water droplets in the 2D images are identified and measured using image analysis. The 'true' water droplet size distribution is calculated from the distribution of the measured profile diameters using a Wicksell transformation of log-normal distributions. The influence of the fluorescent staining and CSLM parameters on the information were studied. The CSLM method was tested on fat spreads with a fat content ranging from 40% to 80%. The results were compared with those obtained by nuclear magnetic resonance spectroscopy (NMR). The distribution parameters [volume weighed geometric mean diameter (D3,3) and the standard deviation (sigma) of the logarithm of the droplet diameter] calculated for 80% fat spreads are in good agreement with those obtained by NMR (within +/- 7% relative). Small differences were found for 65% fat spreads and large differences were identified for 40% fat spreads. The precision for the determination of the D3,3 value by CSLM is worse than that of NMR, even when three images were used to calculate this parameter [3-11% and 1-6% relative standard deviation (RSD), respectively]. The precision for the determination of exp(sigma) by CSLM is comparable or better than that of NMR (1-5% and 3-6% RSD, respectively). CSLM proved to be a reliable method for the determination of the water droplet size distribution of margarines (80% fat). The advantage of CSLM compared to NMR is that visual information is given about the water droplet size distribution in the sample.

Journal Article↗

[Computer-assisted process simulation: a suitable instrument for process optimization in hospitals].

The increasing financial pressure on hospitals resulting from changes in the health system demands detailed knowledge about the cost and earnings situation in the hospital. An essential part of strategic controlling now entails establishing structured cost-unit accounting. This can then be used for example through process optimization to ascertain savings potential and rationalization measures. This paper illustrates a possibility of using computer-assisted process simulation to find ways for prozess optimization. The simulation has been based on the treatment process "operative procedure" of a clinical pathway "CABG" developed in our hospital. The starting points for simulation possible prozess optimization consisted in the elimination of existing waiting times, respectively the parallel organization of certain partial processes. The software used for the simulation was Coral iGrafix Process 2003. The results of 1000 simulation processes reveal a clear reduction in the whole lead-time for the patient, both in avoiding waiting times and also in parallel process organization. In contrast to the initial situation (triangular distribution), the overall duration of the treatment section can be described approximately with normal distribution and a clear cluster of minimum overall durations. Computer-assisted process simulation is a suitable instrument for revealing and establishing possibilities for process optimization in hospitals, and therefore makes a valuable contribution to strategic controlling.

Cardiac Surgical Procedures↗

[Sonographic findings in the hip of newborn infants after pregnancy and labor from breech position].

In the period between October 1990 and July 1992 58 newborn were ultrasonographically examined because of intrauterine breech presentation and therefore higher pressure on the fetal hips. These children were compared with other 66 children who had neither risk factors nor family disposition. We noted significant differences in the distribution of hip dislocation types (by Graf) between both groups. There was a normal distribution among the control group. Children in breech presentation, whether twin or single pregnancy, showed the following: (1) shift of the fine distribution to type Ia, (2) increase of type IIa, classified as pathological not before the 3rd month of life (type IIb, persistence of delay of ossification), (3) two hip dislocations type IIg, (4) one hip dislocation type IIIa. We recommend to perform ultrasound screening after delivery in all children who have had an intrauterine breech presentation, so that treatment can be started as soon as possible.

Breech Presentation↗

Microinjection of anti-coilin antibodies affects the structure of coiled bodies.

The coiled body is a distinct subnuclear domain enriched in small nuclear ribonucleoprotein particles (snRNPs) involved in processing of pre-mRNA. Although the function of the coiled body is still unknown, current models propose that it may have a role in snRNP biogenesis, transport, or recycling. Here we describe that anti-coilin antibodies promote a specific disappearance of the coiled body in living human cells, thus providing a novel tool for the functional analysis of this structure. Monoclonal antibodies (mAbs) were raised against recombinant human coilin, the major structural protein of the coiled body. Four mAbs are shown to induce a progressive disappearance of coiled bodies within approximately 6 h after microinjection into the nucleus of HeLa cells. After their disappearance, coiled bodies are not seen to re-form, although injected cells remain viable for at least 3 d. Epitope mapping reveals that the mAbs recognize distinct amino acid motifs scattered along the complete coilin sequence. By 24 and 48 h after injection of antibodies that promote coiled body disappearance, splicing snRNPs are normally distributed in the nucleoplasm, the nucleolus remains unaffected, and the cell cycle progresses normally. Furthermore, cells devoid of coiled bodies for approximately 24 h maintain the ability to splice both adenoviral pre-mRNAs and transiently overexpressed human beta-globin transcripts. In conclusion, within the time range of this study, no major nuclear abnormalities are detected after coiled body disappearance.

Antibodies, Monoclonal↗

Mean platelet volume: the need for a reference method.

The time course of artifactual effects due to anticoagulants, specimen temperature, and interval between venipuncture and analysis on platelet volume measurements was evaluated. Split specimens were analyzed using hydrodynamic focusing, and platelet distributions were computed using a least-squares fit to a log-normal distribution. Significant artifacts resulted from exposure to EDTA, cooling to room temperature, and delay in exposure to anticoagulant. The artifactual effect of EDTA is extreme and time dependent. Collection of blood in Buffered Citrate, Acid Citrate Dextrose, or Pyridoxal-5'-phosphate supplemented Citrate yielded stable and equivalent results with rapid anticoagulation and incubation at 37 degrees C for up to six hours.

Anticoagulants↗

Three tests for randomness of attack of social groups during an epidemic.

It is suggested that investigation of the attack of social units can be more illuminating of an epidemic process than the usual study of secondary attack rates of individuals. Three tests for detecting non-random differences in the occurrence of a disease between two groups of social units are presented. In each method the number of units attacked (X) in one of two groups of units is considered, rather than the number of individuals attacked. The tests are: (a) to use the Monte Carlo method, computer simulation of the epidemic process, to obtain an empirical distribution to which the observed value of X is compared; (b) to obtain the exact distribution of X; (c) to standardize X and compare it to the standard normal distribution. The three approaches are compared using data obtained from an epidemic of variola minor in two schools and the differences between the results are trivial. However, for large samples the only feasible approach is the Monte Carlo method.

Brazil↗

Cellular and morphological traits of oocytes retrieved from aging mice after exogenous ovarian stimulation.

The present study aims to shed light on the origin of abnormal oocytes ovulated by aged females. In order to reach this goal, cellular and morphological traits of ovulated oocytes from hybrid (C57Bl/6JIco female x CBA/JIco male) female mice retrieved after exogenous ovarian stimulation at the age of 12, 40-42, 50-52, or 57-62 wk were analyzed. Aging of female mice was associated with 1) decreased number of ovulated oocytes; 2) increased percentage of cumulus-free oocytes; 3) raised percentage of oocytes with intracellular mitochondrial aggregates; 4) reduced percentage of oocytes displaying a normal distribution of chromosomes in the metaphase-II plate; 5) increased percentage of normal oocytes exhibiting a DNA-containing polar body (PB); 6) higher percentage of oocytes with chromosome scattering; 7) increased percentage of chromosome-scattered oocytes without a DNA-containing PB and with intracytoplasmic mitochondrial aggregates; 8) raised percentage of oocytes exhibiting chromosome decondensation; 9) lower percentage of chromosome-decondensed oocytes lacking both a DNA-containing PB and intracytoplasmic mitochondrial aggregates; 10) increased percentage of abnormal/degenerated oocytes; 11) reduced percentage of abnormal/degenerated oocytes displaying cellular fragmentation; and 12) higher percentage of abnormal/degenerated oocytes with mitochondrial aggregates exhibiting no nuclear/chromosomal DNA fluorescence, cellular fragmentation, milky or dark cytoplasm, or cellular remains enclosed by the zona pellucida. Although several studies suggest aging females may ovulate aged or overripened oocytes, these data support the hypothesis that old females ovulate an increased percentage of atretic/apoptotic oocytes coming from rescued follicles that would have become atretic earlier in life.

Aging↗

Geometrical optics and the statistical analysis of refractive error.

Relationships among statistical quantities used in the analysis of refractive error are derived from geometrical optics principles. The accuracy of these results are verified using the data of Sorsby et al. As an application of these results, it is shown that there is difficulty in accounting for leptokurtosis of refractive error in terms of correlation among the optical parameters of the eye. Also, it is shown that the distribution of the optical parameters of the eye cannot be a joint-normal distribution.

Humans↗

Crack surface roughness in three-dimensional random fuse networks.

Using large system sizes with extensive statistical sampling, we analyze the scaling properties of crack roughness and damage profiles in the three-dimensional random fuse model. The analysis of damage profiles indicates that damage accumulates in a diffusive manner up to the peak load, and localization sets in abruptly at the peak load, starting from a uniform damage landscape. The global crack width scales as W approximately L(0.5) and is consistent with the scaling of localization length xi approximately L(0.5) used in the data collapse of damage profiles in the postpeak regime. This consistency between the global crack roughness exponent and the postpeak damage profile localization length supports the idea that the postpeak damage profile is predominantly due to the localization produced by the catastrophic failure, which at the same time results in the formation of the final crack. Finally, the crack width distributions can be collapsed for different system sizes and follow a log-normal distribution.

Journal Article↗

Intrathymic maturation of CD4+ T-lymphocytes in an MHC class II deficient transplant model.

Major histocompatibility complex (MHC) class II knockout (class II-) mice fail to generate CD4+ CD8- T-lymphocytes. We were interested in determining whether these class II- mice could be reconstituted with CD4+ CD8- T-lymphocytes following marrow transplantation from normal (class II+) donors. Transplantation of class II+ marrow into lethally irradiated class II- recipients failed to generate peripheral CD4+ CD8- T-lymphocytes. Unexpectedly, however, transplantation of class II marrow into class II+ recipients also resulted in a deficiency of CD4+ CD8- cells. Analysis of intrathymic T cells showed normal distribution of CD4 and CD8 single and double positive or negative thymocytes in normal recipients, while class II- recipients always lacked CD4+ CD8- T cells intrathymically. These results suggest, therefore, that T-cell maturation in mice requires the presence of MHC class II antigens not only in the thymus but also on immature, marrow-derived pre-thymocytes.

Animals↗

Use of robust variance components models to analyse triglyceride data in families.

A robust approach for analysis of variance components models is presented which does not rely on the assumption of multivariate normality for its validity. This approach uses the multivariated normal distribution as a 'working model' but obtains standard errors for the final estimators which do not depend on this underlying distribution. By using the observed variance in the first derivatives of the multivariate normal 'working model' to modify the conventional score test, hypotheses regarding specific components can also be tested without relying directly on the assumption of multivariate normality. A special case is presented where both the modified score test and the likelihood ratio test are equally robust, and simulated data are used to illustrate this situation. Measurements of triglyceride levels in 391 individuals in 60 families randomly selected from the membership of a health maintenance organization are used to illustrate this robust approach to variance components.

Genetic Variation↗

Emergence of anomalous distributions in disordered systems.

The present day non-gaussian distribution of mass density of the universe evolved from an initial gaussian distribution in the presence of nonlinear interactions. We discuss an analog in disordered condensed matter system where increasing the disorder changes the distribution of conductances from a gaussian at weak disorder to a log-normal at strong disorder. The highly asymmetric "one-sided" log-normal distribution in the intermediate crossover regime can be understood as a simple hybrid of these two limiting distributions.

Journal Article↗

Gene density over the chromosome of Escherichia coli: frequency distribution, spatial clustering, and symmetry.

Published studies of gene density (the number of genetic loci per unit of length on the linkage map) for Escherichia coli report a nonrandom frequency distribution and indicate notable symmetry in spatial clustering of gene density. We reexamined these results and found that gene density is a random variable with a frequency distribution that is lognormal. That is, the logarithm of gene density is a normally distributed random variable. Furthermore, comparison of the observed E. coli map and computer-generated random maps showed that symmetries in the spatial clustering of gene density are not exceptional; these features arise naturally among genes (or loci) whose density has this frequency distribution. These results are discussed along with other related examples that illustrate the emerging importance of statistical inference in molecular genetics.

Bacterial Proteins↗