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At least 19 recordsLinked to original sources
PubMed1987

Single-site catalysis of F1-ATPase from thermophilic bacterium PS3 and its dominance in steady-state catalysis at low ATP concentration.

Single-site catalysis by F1-ATPase from a thermophilic bacterium PS3 (TF1) was examined by incubating the enzyme with a submolar amount of radioactive ATP. The profile of single-site catalysis by TF1 at 23 degrees C was different from that of beef heart mitochondrial F1-ATPase (MF1). ATP hydrolysis on the enzyme and release of the products was rapid, and subsequent addition of non-radioactive ATP (cold chase) did not promote the hydrolysis of radioactive ATP, indicating that the rate-limiting step was not the step of product release but the step of ATP binding to the enzyme. Thus, the characteristic features of so-called uni-site catalysis were not observed. At 60 degrees C, whether in the presence or absence of phosphate ion, a small amount of bound [alpha, gamma-32P]ATP and cold chase promotion were observed. However, since bound 32P1 was not detected by centrifugal gel filtration, it is not yet certain whether TF1 has typical uni-site characteristics. Based on the hydrolytic turnover rate for single-site catalysis and analysis of the kinetics of steady-state catalysis, it is proposed that single-site catalysis is dominant even in steady-state catalysis at ATP concentrations of less than about 20 microM.

Adenine Nucleotides↗
PubMed1984

Theoretical basis for the detection of general-base catalysis in the presence of predominating hydroxide catalysis.

The detection of general-base catalysis in the presence of predominating specific-base catalysis in aqueous buffer solutions is examined for various relationships between k0cat and k0OH, the bimolecular rate constants for general-base and hydroxide-ion attack. The three experimental variables that affect the detection of buffer-base catalysis are the type of buffer, conjugate-acid concentration, and ionic strength. Various buffers used in pharmaceutical kinetic studies are considered, and it is concluded that buffers with high Ka values favor detection. Additionally, high conjugate-acid concentrations and ionic strengths appear to optimize the detection of general-base catalysis.

Alkalies↗
PubMed2002

Supported ionic liquid catalysis--a new concept for homogeneous hydroformylation catalysis.

The new concept of supported ionic liquid catalysis involves the surface of a support material that is modified with a monolayer of covalently attached ionic liquid fragments. Treatment of this surface with additional ionic liquid results in the formation of a multiple layer of free ionic liquid on the support. These layers serve as the reaction phase in which a homogeneous hydroformylation catalyst was dissolved. Supported ionic liquid catalysis combines the advantages of ionic liquid media with solid support materials which enables the application of fixed-bed technology and the usage of significantly reduced amounts of the ionic liquid. The concept of supported ionic liquid catalysis has successfully been used for hydroformylation reactions and can be further expanded into other areas of catalysis.

Journal Article↗
PubMed1975

Protein hydration changes during catalysis: a new mechanism of enzymic rate-enhancement and ion activation/inhibition of catalysis.

There exists a linear correlation between the effect of a salt on the rate of an enzymic reaction and its effect on the activation volume (delta V++) of the reaction. Salts that increase delta V++ invariably decrease the rate of the reaction, and vice versa. The salt effects on reaction rate are, however, much larger than would be predicted solely on the basis of pressure-volume work changes deriving from the observed alterations in delta V++. Different inorganic salts affect reaction rates and activation volumes in a manner that reflects the salts' positions in the Hofmeister series. These observations, taken in conjunction with data on the effects of salts on protein functional group (aminoacid side-chains and peptide linkages) hydration, lead us to propose the following hypothesis to account for salt activation and inhibition of catalysis. Aminoacid side-chains and peptide linkages located on or near the protein surface change their exposure to water during conformational events in catalysis. These protein group transfers are accompanied by large volume and energy changes that are due largely to changes in the organization of water around these groups. When these transfer processes occur during the rate-limiting step in catalysis, these energy and volume changes can contribute to the free energy of activation (delta G++) and the activation volume of the reaction. By influencing the degree to which water can organize around transferred protein groups, salts can modify both the delta G++ (rate) and the delta V++ of a reaction.

Catalysis↗
PubMed2003

Catalysis on the coastline: theozyme, molecular dynamics, and free energy perturbation analysis of antibody 21D8 catalysis of the decarboxylation of 5-nitro-3-carboxybenzisoxazole.

Antibody 21D8 catalyzes the decarboxylation of 5-nitro-3-carboxybenzisoxazole. The hapten used was designed to induce an antibody binding site with anion binders for the carboxylate, plus a nonpolar environment to accelerate decarboxylation. A recent X-ray crystal structure of 21D8 has shown that the binding pocket contains an array of both polar and charged residues. Nevertheless, 21D8 is able to catalyze a reaction that involves a decrease in polarity from reactant to transition state. The origins of this phenomenon were explored using various computational strategies-quantum mechanics, theozyme models, docking, molecular dynamics, free energy perturbation, and linear interaction energy-the combination of which has produced a consistent picture of catalysis. By partially desolvating the charged carboxylate, 21D8 manages to effect "catalysis on the coastline," without burying the carboxylate in a nonpolar region of the binding pocket. The results have implications for that broad class of enzyme and antibody catalyzed reactions that involve the conversion of a substrate with a relatively localized charge into a transition state with a highly dispersed charge.

Algorithms↗
PubMed2000

Combinatorial Chemistry for Ligand Development in Catalysis: Synthesis and Catalysis Screening of Peptidosulfonamide Tweezers on the Solid Phase.

On the basis of a pyrrolidine tweezer 1, a library of peptidosulfonamide tweezers (15a-e, 16a-e) was synthesized on the solid phase. This library was screened in a simultaneous substrate screening procedure for the ability to enantioselectively catalyze the Ti(O-i-Pr)(4)-mediated addition of diethylzinc to aldehydes. One of the best solid-phase tweezer catalyst (i.e., 16d, giving an ee of 32% in solid-phase catalysis) was resynthesized in solution (compounds 20 and 21). The now homogeneous solution-phase catalysis showed even better enantioselectivity (i.e., up to 66%).

Journal Article↗
PubMed1991

A stochastic attractor participates in chymotrypsin catalysis. A new facet of enzyme catalysis.

The previously observed discrete levels of vibrational parameters of chymotrypsin and tosyl-chymotrypsin were analyzed by the methods of non-linear dynamics in order to investigate their origin. The fractal dimensionality of the step sequence was determined using the correlation function and the Farey-tree method. These methods yielded the same value and indicated the presence of a "Devil's Staircase", i.e. the existence of a stochastic attractor. The latter was assigned to the substrate-mobilizable conformation. The attractor dimension of the catalytic site in the acylated state was found to be indistinguishable from that of the substrate mobilizable conformation. A "Devil's Staircase" signals the transition from the regular to the stochastic regime. This transition is shared by critical phenomena and may be a prerequisite for catalysis.

Catalysis↗
PubMedDate not supplied

Enzymatic catalysis of formation of Z-aspartame in ionic liquid - An alternative to enzymatic catalysis in organic solvents.

We present the first report of enzymatic catalysis in an ionic liquid. The virtually nonexistent vapor pressure makes ionic liquids an exciting new alternative for enzyme-catalyzed syntheses in environmentally friendly environments. Z-aspartame was synthesized in a thermolysin-catalyzed reaction of carbobenzoxy-L-aspartate and L-phenylalanine methyl ester hydrochloride in 1-butyl-3-methylimidazolium hexafluorophosphate (BP6). Ionic liquids such as BP6 are thermally stable and have a remarkable range of temperatures over which they remain liquid (300 degrees C). With an initial rate of 1.2 +/- 0.1 nmol min(-)(1) mg(-)(1), we observed a competitive rate in comparison to that of enzymatic synthesis in organic solvent. Additionally, the enzyme exhibits outstanding stability, which would normally require immobilization.

Aspartame↗
PubMed1980

Glucose exchange and catalysis by two crystalline hexokinase x glucose complexes. Evidence for an obligatory ATP-dependent conformational change in catalysis.

Hexokinase PI x glucose crystals grown with radiolabeled glucose under conditions similar to those used for x-ray diffraction studies (Bennett, W.S., Jr., and Steitz, T.A. (1978) Proc. Natl. Acad. Sci. U.S.A. 75, 4848-4852) have been shown to contain 1 mol of tightly bound glucose. These crystals exchange all of this glucose in a single exponential process (kobs = 0.7 min-1). In the crystalline form they are, however, inactive and do not catalyze formation of any bound glucose-6-P, suggesting that lattice forces prevent catalysis. A new catalytically active E x glucose complex has been crystallized in the presence of glucose and ADP, a competitive inhibitor of ATP. These crystals readily lose ADP upon washing with concentrated (NH4)2SO4. They exchange all of the tightly bound glucose more slowly than the form grown in the absence of ADP (kobs = 0.05 min-1). Addition of MgATP to the suspension in ammonium sulfate results in rapid conversion of half of the bound glucose to bound glucose 6-phosphate followed by further reaction as products are released. This agrees with the previously measured equilibrium constant of unity for enzyme-bound phosphoryl transfer catalyzed in solution (Wilkinson, K.D., and Rose, I.A. (1979) J. Biol. Chem. 254, 12567-12572). These results indicate that the two E x glucose crystals are distinguished by a nucleotide-dependent conformational difference, which is stabilized by lattice forces. The active crystals allow the facile dissociation of the ADP used to induce the change. This conformational change appears to be pevented in the E x glucose crystals and to be necessary to produce the active ternary complex.

Adenosine Triphosphate↗
PubMed2003

Multisite catalysis: a mechanistic study of beta-lactone synthesis from epoxides and CO--insights into a difficult case of homogeneous catalysis.

Carbonylation of epoxides with a combination of Lewis acids and cobalt carbonyls was studied by both theoretical and experimental methods. Only multisite catalysis opens a low-energy pathway for trans opening of oxirane rings. This ring-opening reaction is not easily achieved with a single-site metal catalyst due to structural and thermodynamic constraints. The overall reaction pathway includes epoxide ring opening, which requires both a Lewis acid and a tetracarbonylcobaltate nucleophile, yielding a cobalt alkyl-alkoxy-Lewis acid moiety. After CO insertion into the Co-C(alkyl) bond, lactone formation results from a nucleophilic attack of the alkoxy Lewis acid entity on the acylium carbon atom. A theoretical study indicates a marked influence of the Lewis acid on both ring-opening and lactone-formation steps, but not on carbonylation. Strong Lewis acids induce fast ring opening, but slow lactone formation, and visa versa: a good balance of Lewis acidity would give the fastest catalytic cycle as all steps have low barriers. Experimentally, carbonylation of propylene oxide to beta-butyrolactone was monitored by online ATR-IR techniques with a mixture of tetracarbonylcobaltate and Lewis acids, namely BF(3), Me(3)Al, Et(2)Al(+).diglyme, and a combination of Me(3)Al/dicobaltoctacarbonyl. We found that the last two mixtures are extremely active in lactone formation.

Journal Article↗
PubMed2004

Lewis acid catalysis in supercritical carbon dioxide. Use of poly(ethylene glycol) derivatives and perfluoroalkylbenzenes as surfactant molecules which enable efficient catalysis in ScCO2.

Lewis acid catalysis in supercritical carbon dioxide (CO(2)) was investigated. While solubility of most organic materials is low in scCO(2), poly(ethylene glycol) derivatives or perfluoroalkylbenzenes were found to work as surfactants to dissolve organic materials in scCO(2). In the presence of these molecules, Lewis acid catalyzed organic reactions such as aldol-, Mannich-, and Friedel-Crafts-type reactions proceeded smoothly in scCO(2). Formation of emulsions was observed in these reactions, and the systems were studied in detail.

Journal Article↗
PubMed2004

Phase behavior and phase-transfer catalysis of tetrabutylammonium salts. Interface-mediated catalysis.

The phase behavior and component composition of the coexisting phases in the tetrabutylammonium bromide (TBABr)/benzene/water/NaBr four-component system were strongly influenced by the temperature, TBABr content, and NaBr concentration. The phase-transfer catalytic activity of TBABr for the reaction of decyl methanesulfonate with sodium bromide was closely related to the phase behavior. Under O (oil-rich phase) + L (TBABr-rich liquid phase) + W (aqueous phase) triphase conditions, the influences of temperature and stirring speed on the phase-transfer catalytic activity were small compared with those under O + W biphase conditions. The addition of other quaternary salts that were able to form w/o aggregates in the O phase enhanced the TBABr catalytic activity even under O + W conditions. The relationship between phase behavior and catalytic activity of tetrabutylammonium chloride or iodide (TBACl or TBAI) was also examined. The results strongly suggested that the catalysis of TBAX was attributable to the interfacial reactions of TBAX with the substrate. The interface includes the water-oil microinterface formed in the microemulsion-like L phase as well as the bulk water-oil interface.

Journal Article↗
PubMed1975

Catalysis by acetylcholinesterase: evidence that the rate-limiting step for acylation with certain substrates precedes general acid-base catalysis.

Inferences about the catalytic mechanism of acetylcholinesterase (acetylcholine hydrolase, EC 3.1.1.7) are frequently made on the basis of a presumed analogy with chymotrypsin, EC 3.4.21.1. Although both enzymes are serine hydrolases, several differences in the steady-state kinetic properties of the two have been observed. In this report particular attention is focused on the second-order reaction constant, kcat/Kapp. While the reported pH dependence and deuterium oxide isotope effect associated with this parameter for chymotrypsin are generally consistent with simple models involving rate-limiting general acid-base catalysis, this study finds a more complicated situation with acetylcholinesterase. The apparent pKa of kcat/Kapp for acetylcholinesterase varies between 5.5 and 6.3 for neutral substrates and involves nonlinear inhibition by [H+]. Deuterium oxide isotope effects for kcat/Kapp range from 1.1 for acetylcholine to 1.9 for p-nitrophenyl acetate. The bimolecular reaction rate appears rate-limiting for acetylcholine at low concentrations, while a rate-limiting induced-fit step is proposed to account for apparent pKa values and low deuterium oxide isotope effects associated with low concentrations of phenyl acetate and isoamyl acetate.

Acetylcholine↗
PubMed1989

Catalysis of thiol/disulfide exchange: single-turnover reduction of protein disulfide-isomerase by glutathione and catalysis of peptide disulfide reduction.

Protein disulfide-isomerase, a protein localized to the lumen of the endoplasmic reticulum of eukaryotic cells, catalyzes the posttranslational formation and rearrangement of protein disulfide bonds. As isolated from bovine liver, the enzyme contains 0.8 free sulfhydryl group per mole of protein monomer and 3.1 disulfide bonds. Single-turnover experiments in which the disulfide bonds of the native enzyme are reduced by glutathione reveal three distinct reduction steps corresponding to the sequential reduction of the three disulfide bonds. The fastest disulfide to be reduced undergoes a change in the rate-determining step with increasing GSH concentration from a step which is second-order with respect to GSH concentration to a step which is first-order in GSH concentration. The disulfide which is reduced at an intermediate rate displays kinetics that are first-order in GSH concentration, and the slowest disulfide to be reduced exhibits kinetics which are second-order in GSH concentration. The enzyme catalyzes the steady-state reduction of a disulfide-containing hexapeptide (CYIQNC) by GSH. Initial velocity kinetic experiments are consistent with a sequential addition of the substrates to the enzyme. Saturation behavior is not observed at high levels of both substrates (Km for GSH much greater than 14 mM, Km for CYIQNC much greater than 1 mM). Only one of the three disulfides appears to be kinetically competent in the steady-state reduction of CYIQNC by GSH. The second-order thiol/disulfide exchange reactions catalyzed by the enzyme are 400-6000-fold faster than the corresponding uncatalyzed reactions.

Catalysis↗