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At least 19 recordsLinked to original sources
PubMed2025

Genetic basis and role of exotic accessions in cultivated cotton fiber quality improvement.

Exotic Gossypium accessions still harbor QTL&#x2011;validated alleles that, combined with CRISPR pyramiding and genomic selection, can break the entrenched fiber length-strength trade&#x2011;off. Cotton's four independent domestications twice in diploids and twice in allotetraploids offer a natural experiment in fiber improvement. Synthesizing three decades of data, we chart how polyploidy, selection and modern breeding have repeatedly reshaped the Gossypium genome. More than 15,000 quantitative trait locus (QTL) and genome wide association mapping studies (GWAS) hits converge on a handful of chromosomal "hotspots"; new MAGIC, NAM, NIL and long-read resources now narrow these peaks to&#x2009;<&#x2009;200&#xa0;kb, resolving causal genes such as GhHOX3, GhZF14 and GhMYB7. Multi-omics evidence links auxin, ethylene, gibberellin, brassinosteroid and strigolactone signaling to HDZIP IV, MYB, bHLH/HLH and ERF networks that drive fiber initiation, extreme cell elongation and cellulose deposition. Population genomics shows that&#x2009;~&#x2009;40% of favorable fiber alleles are fixed in elite Gossypium hirsutum, yet wild diploids and landraces still harbor variants that could break the length strength trade-off. We propose a three-step roadmap genomic selection, CRISPR gene pyramiding and accelerated introgression to expand cotton's genetic base and deliver fibers suited to sustainable textile demands.

Gossypium↗
PubMed2026

Selection of GhTT2-A07 promoter enhances fiber quality in improved cotton varieties.

Modern cultivated cotton fibers are predominantly white with enhanced quality compared to their wild ancestors. However, the molecular mechanisms and evolutionary drivers linking fiber color to quality remain least focused. In this study, we identified FQC1 (Fiber Quality and Color 1), a major quantitative trait locus (QTL) on chromosome A07 that concurrently regulates both fiber quality and pigmentation. Through map-based cloning, we revealed that Gossypium hirsutum TRANSPARENT TESTA2-A07 (GhTT2-A07), an R2R3-MYB transcription factor, resides within this locus. GhTT2-A07 modulates fiber development by directly activating genes in the general phenylpropanoid pathway, thereby promoting the metabolic flux toward downstream secondary metabolites. Variations in the GhTT2-A07 promoter led to its reduced expression in modern white cotton cultivars. This down-regulation suppresses the accumulation of S/G/H-type lignin monomers and proanthocyanidins, resulting in altered secondary cell wall composition and ultimately enhancing the quality of mature white fibers. Population genetic analyses further indicate that the white-fiber allele GhTT2-A07W has been fixed in modern breeding genotypes, underscoring the impact of artificial selection during cotton domestication. Overall, our study elucidates the biochemical and molecular mechanisms underlying fiber quality and pigmentation in cotton, clarifies the selection criteria for high-quality white fibers in modern cultivars, and provides a theoretical basis for future targeted genetic improvement of cotton fibers.

Alleles↗
PubMed1979

Correlation between the physical properties of dietary fibers and their protective activity against amaranth toxicity in rats.

The mechanism(s) by which dietary fiber (DF) exerts beneficial effects on the growth of weanling rats fed toxic doses of amaranth (Food & C Red No. 2) was investigated. When crude DF (GDF) prepared from the roots of edible burdock (Arctium lappa L.) were added at graded levels to a purified basal diet supplemented with amaranth (control), growth was improved with increaseing GDF level up to and above that of the basal diet-fed group. The correlation equation obtained between the dietary percentage level of GDF (X) and the protective activity (Y) expressed as (difference in body weight gains between rats fed test and control diets) X 100/(difference in body weight gains between rats fed basal and control diets) was Y = 32.6 + 86.9 logX (r = 0.98). The comparative activities at the 5% level of various DF prepared from GDF decreased in the order of holocellulose, neutral-detergent fiber, GDF, crude fiber and acid-detergent fiber. Cellulose from cotton fiber had no activity. The activity was intimately related to their water-holding capacity (WHC) and settling volume in water (SV) (f = 0.90 and 0.96, respectively), but not to the capacity to bind amaranth. The correlation showed a saturation phenomenon quite similar to the equation described above in respect of GDF level. At the 10% level, even cellulose which has a low SV, showed protective activity similar to that of 3% GDF. From these and other results, it was concluded that the protective activity of various DF mainly depends on their physical properties such as SV or WHC.

Amaranth Dye↗
PubMed1975

Biosynthesis and structure of glycosyl diglycerides, steryl glucosides, and acylated steryl glucosides.

A particulate enzyme fraction from Mycobacterim smegmatis catalyzed the transfer of -14C-glucose from the UDP--14C-glucose into neutral glycolipids. The two major radioactive components were purified by column chromatography on O-diethylamino ethyl cellulose (acetate) and thin layer chromatography on silica gel in several solvents. The first product yielded a water-soluble component upon saponification, which had a hexoseglycerol ratio of 1:1 with all of the hexose being identified as glucose. The second product yielded a water-soluble component upon saponification which contained hexose and glycerol in a 2:1 ratio and, in addition to glucose, contained lesser amounts of mannose and galactose. Palmitate and oleate were the predominant fatty acids and were present in equimolar amounts. The products thus have been identified as monoglycosyldiglyceride and diglycosyldiglyceride. The diglycosyldiglyceride could also be labeled with -14C-galactose when UDP--14C-galactose served as the donor, but the monoglycosyldiglyceride was only slightly labeled with -14C-galactose. Membrane fractions from mung bean seedlings catalyzed the transfer of -14C-glucose from UDP--14C-glucose into a neutral glycolipid which has been purified by thin layer chromatography and analyzed by combined gas liquid chromatography-mass spectrometry. It was determined to be a steryl glucoside with the two major sterol components being betasitosterol and stigmasterol linked to beta-D-glucose. Particulate fractions from developing cotton fibers also catalyzed the formation of steryl glucosides and, in addition, they catalyzed the esterification of steryl glucosides at the 6 position of glucose with fatty acids (primarily palmitate and oleate) from an andogenous acyl donor. Both the glucosyl transferase and the acyltransferase have been solubilized with Triton X-100 and partially purified by chromatography on Sephadex G-200. The acyltransferase activity was reconstituted by the addition of the steryl glucoside and a phospholipid acyl donor.

Acyltransferases↗
PubMed1979

Cotton dust sampling efficiency of the vertical elutriator.

A theoretical model of the vertical elutriator air sampler based upon the phenomenon of flow separation at the inlet was developed at SRRC. The model's equations were simulated by a computer program (VELUT). The model was calibrated by comparison of available experimental results to isokinetic sampling efficiencies calculated by the model. The calibrated model was used to predict integral efficiencies for a systematic assortment of size distributions of cotton dust. Rather than cutting off cleanly at 15 micrometers, the computer model exhibited a 50% differential efficiency at approximately 20 micrometers. Furthermore, the model predicted substantial non-zero collection efficiencies in the aerodynamic size range of individual cotton fibers. Program VELUT represents an objective method whereby the isokinetic sampling efficiency of the vertical elutriator can be explicitly calculated for any known or postulated ambient dust distribution presented to the sampler at its inlet plane.

Dust↗
PubMed1977

Foreign body-type reaction following crown cementation.

1. Hazards of the indirect impression techniques for crown fabrication are discussed. 2. A foreign body reaction caused by retained cotton fibers is substantiated. 3. Since the gingival retraction cord is a possible and likely source, placing the cord and choice of instruments is important.

Adult↗
PubMed1979

Wood fiber contamination of reusable cotton laparotomy pads.

If the thesis that disposable fabrics are responsible for granulomatous peritonitis is correct, surgeons who operate within the abdominal cavity and use these products would be reporting instances of granulomatous peritonitis in epidemic proportions. Such is not so. Consequently, there can be valid concern expressed as to implied medicolegal problems. While the observations and conclusions were made in obvious good faith, nevertheless, there appears to be sufficient grounds for questioning this apparent cause and effect conclusion and for focusing interest on a more important consideration, the indiscriminate collection, sorting and laundering of the reusable cotton laparotomy pad. Certainly, attention should be directed to the more rigidly controlled use and disposition of these pads by the individual hospital.

Equipment and Supplies, Hospital↗
PubMed2026

Expression of cotton GhMYB109 complements non-hair cell fate in the root epidermis of the Arabidopsis thaliana werewolf mutant.

Root cell fate and patterning in plants are orchestrated by the expression of cell-type-specific genes, including WEREWOLF (WER). Phylogenetic analysis of WER, functional WER homologs in Type III species (Rhodiola rosea and Boehmeria nivea), and related R2R3 MYB proteins identified in the cotton genome revealed that GhMYB109-a known regulator of fiber development in cotton ovules-clustered in a clade with Arabidopsis thaliana WER. To determine whether GhMYB109 is a functional homolog of WER, we expressed GhMYB109 under the control of the CaMV 35S promoter in the Arabidopsis thaliana wer-1 mutant and analyzed root epidermal cell patterning by counting root hairs. GhMYB109 expression significantly decreased the percentage of root hairs at both H and N positions. We found that most epidermal cells in the cotton root develop into root hairs (Type I pattern) although the cotton genome contains a functional WER homolog, GhMYB109. Additionally, GhMYB109 has been reported not to be expressed in cotton roots. These support the idea that GhMYB109 is a functional homolog of WER and that Arabidopsis thaliana and cotton diverged in root epidermal morphology through modifications in cis-regulatory elements rather than a functional divergence of their WER-like R2R3 MYB transcription factors.

Arabidopsis thaliana↗
PubMed2026

3D chromatin remodeling during domestication defines novel targets for crop improvement.

Three-dimensional (3D) genome folding shapes gene regulation, yet the genetic underpinnings linking 3D genome evolution to phenotypic innovation during domestication remain elusive. Using population-scale Hi-C profiling of 34 semi-wild and 267 cultivated allotetraploid cottons, we generated a pan-3D genome atlas capturing extensive diversity in topologically associating domains (TADs) and chromatin loops. Chromatin interactome-wide association studies identified 105 TAD reconfigurations and 58 loop rewirings that were established as the 3D chromatin basis of fiber quality, boosting heritability estimates for fiber strength by 16% and fiber length by 20%. We reveal that domestication selection within sequence-defined sweeps fixed 57% of 3D conformation signatures, thereby decoupling sequence-level from chromatin-level selection and shifting the subgenome expression balance of 39 homoeologs in cultivated cotton. Sequence-based modeling and mutational analyses identified the C2H2 zinc-finger protein YY1 as a conserved mediator of 3D genome organization. This study provides a resource for redefining precision-breeding paradigms by harnessing cryptic 3D chromatin targets.

3D genome↗
PubMed2025

A telomere-to-telomere reference genome assembly of the red silk cotton tree (Bombax ceiba).

Bombax ceiba, an important ornamental tree and potential fiber resource in the textile industry, is widely distributed in tropical and subtropical regions. In this study, we assembled a nearly gap-free telomere-to-telomere (T2T) genome of B. ceiba using Illumina, PacBio High-fidelity (HiFi), ONT ultra-long, and Hi-C sequencing technologies. The genome spanned approximately 807.89&#x2009;Mb, with a scaffold N50 of 16.58&#x2009;Mb, and 754.68&#x2009;Mb (93.41%) of genomic sequences were anchored onto 48 pseudo-chromosomes. Benchmarking Universal Single-Copy Orthologs (BUSCO) analysis revealed a completeness of 99.40%, identifying 1,378 single-copy and 213 duplicated genes out of 1,614. The genome contained 67.72% (547.11&#x2009;Mb) repeat regions, with 39,708 predicted protein-coding genes. Collectively, our study provides valuable genomic data for investigating the evolutionary history of the Malvaceae family.

Genome, Plant↗
PubMedDate not supplied

[Spin label study of the temperature stability of plant fibers].

Temperature relationship of rotation diffusion parameters of radical connected to different varieties of cotton filament, isolated from normal and with affected cotton was studied. It has been found that structural transitions accompanied with a markable increase of radical rotation diffusion in all the samples studied, proceed at definite temperatures. For filament samples from wilt-affected plants temperatures at which structural transitions proceed are higher as compared to the filaments taken from normal plants. This phenomenon point to higher micro rigidity of wilt-affected plants.

Climate↗
PubMed2026

Genome-Wide Characterization of the ZIP Transporter Family in Sea Island Cotton (Gossypium barbadense L.) and Expression Profiling Under Heavy Metal and Pathogen Stresses.

G. barbadense represents an indispensable germplasm resource for high-quality textile fiber and disease resistance; nevertheless, systematic information regarding its ZRT/IRT-like protein (ZIP) gene family remains limited. Here, a total of 46 GbZIP genes were identified across the G. barbadense genome. Comprehensive bioinformatic investigations revealed uneven chromosomal distribution and confirmed that segmental/whole-genome duplications, supplemented by localized tandem duplications, drove family expansion. Members clustered within the same phylogenetic clades shared conserved motif organization and gene architecture, while promoter regions harbored abundant cis-acting elements associated with phytohormone and stress signaling. Transcriptome profiling indicated distinct expression patterns across vegetative/reproductive tissues, fiber and ovule developmental stages, and diverse abiotic stress conditions (cold, hot, drought, and salt). Quantitative Real-Time PCR (qRT-PCR) further validated that several GbZIP candidates exhibited temporal expression variations upon exposure to cadmium toxicity, V. dahliae infection, and combined Cd-V. dahliae stress. Specifically, GbZIP13, GbZIP18, GbZIP27, and GbZIP36 displayed prominent broad-spectrum responses to all three stress conditions, whereas GbZIP16, GbZIP29, and GbZIP30 showed stress-specific regulatory divergence. Overall, this study aims to systematically analyze the evolutionary characteristics and expression patterns of the GbZIP family, and to specifically evaluate the response differences under Cd stress, V. dahliae stress, and combined stress, in order to identify potential key candidate genes.

Gossypium barbadense↗
PubMed1978

A study on the microbial filtration efficiency of surgical face masks--with special reference to the non-woven fabric mask.

With the experimental apparatus designed and made available by Nicholes, we evaluated the bacterial filtration efficienty (B.F.E.) of the non-woven fabric and cotton cloth masks. The apparatus was supplied by Nicholes (U.S. Military Specification 36954 C mask, surgical, disposable). The study presented here was performed as a round robin test with Nicholes. By using this apparatus, comparison was made as to the B.F.E. of the six different kinds of surgical face mask before and after prolonged use. The result was obtained that the disposable mask made of glass fiber mat combined with non-woven fabric proved to be the highest in performance with a B.F.E. of 98.1-99.4%. It is useful both in preventing hospital infection and in general clinical practice. The B.F.E. of the conventional cotton cloth masks is not only lower but variable over a wide range of 43.1-93.6%.

Aerosols↗