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Circle-seq analysis reveals the involvement of eccDNAs in salt stress response of bermudagrass (Cynodon dactylon).

Extrachromosomal circular DNAs (eccDNAs) have been identified in a wide variety of plant species and play a pivotal role in genomic plasticity, emerging as key drivers of stress adaptation. However, the putative roles of eccDNAs under environmental stress remain largely unexplored in plants. As a high-quality turfgrass, bermudagrass (Cynodon dactylon L.) is a pivotal species for the reclamation and improvement of saline-alkali soils. Therefore, we performed a comprehensive analysis of the eccDNA profiles in bermudagrass under salt stress. A total of 1,068 eccDNAs were identified across all chromosomes. These eccDNAs were characterized by short lengths (ranging from 100 bp to 1 kb) and low GC content. Their genomic distribution was not entirely random but rather exhibited a certain preference for intergenic regions and coding sequences (CDS). Crucially, null model analysis of A/T-rich junction sites revealed that these eccDNAs primarily originate from physically unstable scaffold/matrix attachment regions (S/MARs) via stochastic fragmentation, followed by opportunistic circularization predominantly mediated by the non-homologous end joining (NHEJ) pathway. Notably, salt stress specifically enriched eccDNAs derived from DNA transposons, including the Tc1/Mariner, CACTA and MITE superfamilies. Overall, our findings reveal complex extrachromosomal structural dynamics in bermudagrass, offering novel insights into its genomic adaptation under environmental stress.

Cynodon

Transcriptome Analysis Reveals Key Drought-Stress-Responsive Genes in Two Bermudagrass Genotypes.

Drought inhibits grass development and survival. However, molecular-based studies on drought tolerance mechanisms in bermudagrass (Cynodon dactylon) remain scarce. Therefore, a drought-resistant bermudagrass (Tianshui) and a drought-sensitive (Zhengzhou) genotype were selected and subjected to 28 days of 50% drought stress. Leaves were sampled for RNA sequencing. Under drought stress, 2410 differentially expressed genes (DEGs) were discovered in which 1214 were upregulated (tolerant vs. sensitive) and 1196 downregulated. Kyoto Encyclopedia of Genes and Genomes (KEGG) indicated that these specific DEGs are notably present in hormonal signal transduction pathways, flavonoids biogenesis, carbohydrate metabolic processes, abscisic acid-mediated pathways, MAPK signaling, and gluconeogenesis. Additionally, the plant hormone signal transduction pathway is predominantly linked to abscisic acid signal transduction, and many other plant hormones were also drought-responsive. The study specifically targeted genes associated with the antioxidant enzyme system, with a particular emphasis on responsive TFs such as MYB, bHLH, bZIP, GRAS, and WRKY. This study establishes the theoretical framework and identifies gene sources for the genetic enhancement and breeding of bermudagrass in the future.

Cynodon

Monitoring and assessment of mercury pollution in the vicinity of a chloralkali plant. IV. Bioconcentration of mercury in in situ aquatic and terrestrial plants at Ganjam, India.

In situ aquatic and terrestrial plants including a few vegetable and crop plants growing in and around a chloralkali plant at Ganjam, India were analyzed for concentrations of root and shoot mercury. The aquatic plants found to bioconcentrate mercury to different degrees included Marsilea spp., Spirodela polyrhiza, Jussiea repens, Paspalum scrobiculatam, Pistia stratiotes, Eichhornia crassipes, Hygrophila schulli, Monochoria hastata and Bacopa monniera. Among wild terrestrial plants Chloris barbata, Cynodon dactylon, Cyperus rotundus and Croton bonplandianum were found growing on heavily contaminated soil containing mercury as high as 557 mg/kg. Analysis of mercury in root and shoot of these plants in relation to the mercury levels in soil indicated a significant correlation between soil and plant mercury with the exception of C. bonplandianum. Furthermore, the tolerance to mercury toxicity was highest with C. barbata followed by C. dactylon and C. rotundus, in that order. The rice plants analyzed from the surrounding agricultural fields did not show any significant levels of bioconcentrated mercury. Of the different vegetables grown in a contaminated kitchen garden with mercury level at 8.91 mg/kg, the two leafy vegetables, namely cabbage (Brassica oleracea) and amaranthus (Amaranthus oleraceous), were found to bioconcentrate mercury at statistically significant levels. The overall study indicates that the mercury pollution is very much localized to the specific sites in the vicinity of the chloralkali plant.

Environmental Monitoring

Olive (Olea europea) and privet (Ligustrum vulgare) pollen allergens. Identification and cross-reactivity with grass pollen proteins.

Protein blotting studies showed that three olive pollen components with mol. wts approximately 18-19, 20 and 40 kD can be considered to be major allergens. For privet pollen, the highest recognition frequencies were for allergens of mol. wts approximately 20, approximately 19, approximately 40 and approximately 70 kD. When results with the 62 subjects examined were separated into groups corresponding to their geographical locations, viz. Italy, France and Australia, subjects sensitized to olive, but not other pollens (some Italian subjects), were found to show higher frequencies of recognition of major olive allergens than subjects sensitized to olive pollen via cross-reacting allergens from unrelated pollen sources (the Australian and French subjects). Blotting, adsorption and elution and inhibition studies clearly demonstrated allergenic cross-reactivity (that is, antigenic cross-reactivity detected by IgE antibodies) between olive, privet, ryegrass (Lolium perenne) and couch grass (Bermuda grass: Cynodon dactylon) pollen components. As with our previous findings with birch pollen, we conclude that the presence of pollen-reactive IgE antibodies may not necessarily be a true reflection of the sensitizing pollen species.

Allergens

Purification and characterization of an allergen from celery immunochemically related to an allergen present in several other plant species. Identification as a profilin.

The purification of a 15 kD allergen from celery was obtained by a four step procedure. Evidence for at least two isoallergenic forms was obtained after analysis by two-dimensional-electrophoresis. A rabbit polyclonal antibody raised against this purified allergen allowed us to confirm our precedent results on the occurrence of allergenically and molecular mass-related components in celery and birch and mugwort pollens. In addition such components were also present in numerous other species like Cynodon dactylon, Sorghum halopense, Poa pratensis, Ambrosia elatior and in apple and carrot. The 15 kD allergen was identified as profilin by use of a specific rabbit polyclonal antibody that recognized a recombinant birch profilin. In addition, the purified celery allergen binds IgE from sera of patients allergic to birch profilin. These results reinforce the concept of profilin as a panallergen responsible in some patients for cross-allergic manifestations to various and unrelated species of grasses, weeds, trees, vegetables and fruits.

Allergens

Nitrogen fixation, denitrification, and pleomorphic growth in a highly pigmented Spirillum lipoferum.

A strain of Spirillum lipoferum with intense red pigmentation was isolated from the roots of Cynodon dactylon "Coastal." This isolate vigorously reduced acetylene when grown in N-free, Na-malate, semisolid agar, and it was identical to S. lipoferum strain SP7 by standard taxonomic tests. Both S. lipoferum SP7 and the C. dactylon root isolate displayed the unique features of being denitrifiers as well as N2 fixers. The N2-dependent growth curve was biphasic: cells in younger cultures showed the characteristic spiral shape and motility, but those in older cultures developed larger, nonmotile, cystlike forms. Nitrogenase activity seemed associated only with younger spiral forms. The red pigment may be a b- or c-type cytochrome. The strong red color, which this strain develops, could be used as a marker in evaluating soil inoculation experiments.

Acetylene

Implant and copper oxide needles for steers grazing Acremonium coenophialum-infected tall fescue pastures: effects on grazing and subsequent feedlot performance and serum constituents.

Two experiments were conducted to compare the effects of a progesterone-estradiol implant (PEI) with no implant (NI) and 20 g of copper oxide needles (CuON) with no CuON on grazing, subsequent feedlot performance, and selected serum constituents of steers. In Exp. 1, 114 Limousin crossbred yearling steers (317 kg average initial BW) were stocked continuously on Acremonium coenophialum-infected tall fescue (Festuca arundinacea Schreb.)-ladino clover (Trifolium repens L.) pastures (C) or were rotated to bermuda grass (Cynodon dactylon [L.] Pers.) during summer months (R) of two consecutive years. Implant and copper treatments were applied within pasture. Blood samples were collected four times during each grazing season. Continuously stocked steers had greater (P less than .05) grazing gain, less (P less than .10) feedlot gain, and heavier (P less than .05) carcass weights than R steers did. Implanted steers had greater (P less than .05) pasture but lesser (P less than .05) feedlot gains than did NI steers. Prolactin concentrations were greater (P less than .05) from R than from C steers in late summer 1988. Ceruloplasmin was greater (P less than .01) with CuON than without on the last three and last two sampling dates in 1988 and 1989, respectively. In Exp. 2, blood samples were collected twice from 40 mixed-breed steers (283 kg average initial BW) receiving the same implant and copper treatments as in Exp. 1 and grazing infected fescue for one season. Serum ceruloplasmin and copper concentrations were increased (P less than .01) by CuON, but other measurements did not differ among treatments. Summer grazing of bermuda grass increased serum copper, ceruloplasmin, and prolactin but decreased grazing performance. Implanting increased grazing performance. Copper oxide needles increased serum ceruloplasmin and copper concentrations but did not affect steer performance.

Animal Feed

Technical note: stocking equivalents and stocking rate-gain relationships for steers and cow-calf pairs grazing oversown bermuda grass.

Grazing experiments may use steers or cow-calf pairs for measuring animal performance on pasture treatments, but the validity of extrapolation between these classes of cattle has not been verified. A grazing study was conducted in the spring and summer of both 1988 and 1989 to determine stocking equivalents and stocking rate-weight gain relationships for steers and cow-calf pairs grazing Coastal bermuda grass (Cynodon dactylon [L.] pers.) oversown with rye (Secale cereale L.) and ryegrass (Lolium multiflorum Lam.). Average daily gain and stocking rate (SR; 3.2, 4.2, 6.2, and 7.4 animals per hectare for steers and 1.7, 2.5, 3.7, and 4.9 pairs per hectare for cow-calf pairs) were both adjusted so that comparisons could be made on an equal BW basis. Disk meter height readings were used as measurements of forage accessibility. Disk meter height responses to SR did not differ (P greater than .10) between steer and cow-calf paddocks. There was a linear (P less than .001) decrease in ADG as SR increased, but this decline was steeper (P less than .001) for steers than for cows or suckling calves. Steers tended to be more productive than calves at low SR but less productive at high SR. Disk meter heights for the range of SR used in the study did not differ (P greater than .10) for steers and cow-calf pairs at equivalent BW per hectare. Our study suggests that live BW is a reasonable basis for determining forage requirements of steers and cow-calf pairs under grazing conditions, but extrapolation of production between classes of livestock will not be reliable.

Animal Feed

Diet characteristics, digesta kinetics, and dry matter intake of steers grazing eastern gamagrass.

Eastern gamagrass (Tripsacum dactyloides [L.] L.) has attracted attention as a forage crop, but information on its use is lacking. This 2-yr study compared diet quality, ingestive mastication, and ADG by steers grazing eastern gamagrass (GG), flaccidgrass (Pennisetum flaccidum Griseb.), and Tifton 44 bermudagrass (Cynodon dactylon [L.] Pers.). The design was a randomized complete block with two agronomic replicates. The diet selected by steers from GG in May did not differ from the diet selected by steers from flaccidgrass (FG) for IVDMD (77.3%), NDF (44.0%), CP (19.5%), and mean and median particle sizes of the ingesta (1.8 and 1.4 mm). In July, GG diets had three percentage units less IVDMD (P less than .05), 8.4 percentage units more NDF (P less than .05), and 4.5 percentage units less CP (P = .07) than the mean of FG and bermudagrass (BG). The canopy (July) of GG had the greatest proportion of its DM as leaf (59 vs 26% for FG and 22% for BG) and the least proportion as stem (25 vs 40% for FG and 59% for BG). Mean particle size (millimeters) of masticates differed (P = .05) among forages with GG greatest (2.2), followed by FG (1.6), and BG particles were smallest (1.2). Proportion of large (greater than or equal to 2.8 mm), medium (less than 2.8 greater than or equal to .5 mm), and small (less than .5 mm) particles of the masticate DM, and their IVDMD and NDF concentration, interacted with species (P less than .05). Gamagrass masticate had the greatest proportion (28%) of large particles and BG the greatest proportion (23%) of small particles. The least IVDMD occurred for large particles of BG (62.5%) and small particles of GG (63.8%). Digesta kinetics did not differ among species. Characteristics of GG yielded steer ADG of .82 vs .67 kg for FG and .30 kg for BG (P = .05).

Animal Feed

Hypoglycemic effect of plants used in Mexico as antidiabetics.

The objective of this work is to investigate the hypoglycemic effect of 12 "antidiabetic" plants used in Mexico. The studies were performed using 27 healthy rabbits with the gastric administration of water, tolbutamide or decoction of the "antidiabetic" plant before the induction of temporary hyperglycemia by subcutaneous injection of 50% dextrose solution (4 ml/kg of weight) at the beginning of the experiment and after 60 min. Blood glucose was determined every 60 min for a period of 5 h. Tolbutamide and eight of the studied plants decreased significantly the hyperglycemia as compared with control test (water) (p < 0.05). The strongest effect was yielded by Guaiacum coulteri, followed by Marrubium vulgare, Crataegus pubescens, Cynodon dactylon, Calea zacatechichi, Buddleia americana, Bauhinia divaricata and Coix lachryma. The decrease of hyperglycemia caused by Physalis phyladelphyca, Pavonia schiedeana and Eucaliptus globulus was not significant (p > 0.05). Urtica dioica increased glycemia slightly.

Animals