SEARCH · PubMed Health

Results for “Oceanography”

Explore indexed PubMed citations for clinical trials, systematic reviews and public health research. Read source abstracts and follow each citation to its original PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 19 recordsLinked to original sources

PubMed2001

Flow cytometry in oceanography 1989--1999: environmental challenges and research trends.

BACKGROUND: The present review is based on the identification of four major environmental crises that have been approached from a biological oceanographic viewpoint. These crises are the release of contaminants in near shore marine waters, the collapse of marine resources that were renewable until recently, the loss of biodiversity, and global climate change METHODS: The review examines the contribution of cytometry-based biological oceanography to the resolution of the four environmental crises. Using a database of 302 papers, flow cytometric (FCM) studies in biological oceanography over the 1989--1999 decade are examined. Future biological oceanographic applications of FCM are discussed. RESULTS: Most of the published FCM oceanographic studies focus on phytoplankton and bacterioplankton. Analysis of our 1989-1999 database shows the predominance of studies dedicated to phytoplankton (77%), followed by heterotrophic bacteria (21%). The latter progressively increased over the last decade, together with the improved understanding of the biogeochemical and trophic roles of marine bacteria. Most studies on these two microorganisms were conducted in vitro until 1996, after which the trend reversed in favor of in situ research. The most investigated areas were those with major international sampling efforts, related to the changing climate. Concerning environmental topics, 62% of papers on phytoplankton and bacterioplankton focused on the structure of microbial communities and fluxes (e.g., production, grazing); this provides the basis for biological oceanographic studies on resources and climate change. CONCLUSIONS: Future progress in the biological oceanographic use of FCM will likely fall into two categories, i.e., applications where FCM will be combined with the development of other methods and those where FCM will be the main analytical tool. It is expected that FCM and other cytometric approaches will improve the ability of biological oceanography to address the major environmental challenges that are confronting human societies.

Animals↗

PubMed2006

The Prestige crisis: operational oceanography applied to oil recovery, by the Basque fishing fleet.

On 19th November 2002, the oil tanker Prestige (containing 77,000 tonnes of heavy fuel no. 2 (M100)) sank in 3500 m of water, off the coast of northwestern Spain. Intermittent discharge of oil from the stricken tanker, combined with large-scale sea surface dispersion, created a tracking and recovery problem. Initially, conventional oil recovery approaches were adopted, close to the wreck. With time and distance from the source, the oil dispersed dramatically and became less viscous. Consequently, a unique monitoring, prediction and data dissemination system was established, based upon the principles of 'operational oceanography'; this utilised in situ tracked buoys and numerical (spill trajectory) modelling outputs, in combination with remote sensing (satellite sensors and visual observation). Overall, wind effects on the surface waters were found to be the most important mechanism controlling the smaller oil slick movements. The recovery operation involved up to 180 fishing boats, 9-30 m in length. Such labour-intensive recovery of the oil (21,000 tonnes, representing an unprecedented ratio of 6.6 tonnes at sea, per tonne recovered on land) continued over a 10 month period. The overall recovery at sea, by the fishing vessels, represented 63% of the total oil recovered at sea; this compares to only 37% recovered by specialised 'counter- pollution' vessels.

Atlantic Ocean↗

PubMed2005

Geomicrobiology in oceanography: microbe-mineral interactions at and below the seafloor.

Oceanography is inherently interdisciplinary and, since its inception, has included the study of microbe-mineral interactions. From early studies of manganese nodules, to the discovery of hydrothermal vents, it has been recognized that microorganisms are involved at various levels in the transformation of rocks and minerals at and below the seafloor. Recent studies include mineral weathering at low temperatures and microbe-mineral interactions in the subseafloor "deep biosphere". A common characteristic of seafloor and subseafloor geomicrobiological processes that distinguishes them from terrestrial or near-surface processes is that they occur in the dark, one or more steps removed from the sunlight that fuels the near-surface biosphere on Earth. This review focuses on geomicrobiological studies and energy flow in dark, deep-ocean and subseafloor rock habitats.

Bacteria↗

PubMed2005

Genomic perspectives in microbial oceanography.

The global ocean is an integrated living system where energy and matter transformations are governed by interdependent physical, chemical and biotic processes. Although the fundamentals of ocean physics and chemistry are well established, comprehensive approaches to describing and interpreting oceanic microbial diversity and processes are only now emerging. In particular, the application of genomics to problems in microbial oceanography is significantly expanding our understanding of marine microbial evolution, metabolism and ecology. Integration of these new genome-enabled insights into the broader framework of ocean science represents one of the great contemporary challenges for microbial oceanographers.

Ecosystem↗

PubMed2006

Real-time sea-level gauge observations and operational oceanography.

The contribution of tide-gauge data, which provide a unique monitoring of sea-level variability along the coasts of the world ocean, to operational oceanography is discussed in this paper. Two distinct applications that both demonstrate tide-gauge data utility when delivered in real-time are illustrated. The first case details basin-scale operational model validation of the French Mercator operational system applied to the North Atlantic. The accuracy of model outputs in the South Atlantic Bight both at coastal and offshore locations is evaluated using tide-gauge observations. These data enable one to assess the model's nowcasts and forecasts reliability which is needed in order for the model boundary conditions to be delivered to other coastal prediction systems. Such real-time validation is possible as long as data are delivered within a delay of a week. In the second application, tide-gauge data are assimilated in a storm surge model of the North Sea and used to control model trajectories in real-time. Using an advanced assimilation scheme that takes into account the swift evolution of model error statistics, these observations are shown to be very efficient to control model error, provided that they can be assimilated very frequently (i.e. available within a few hours).

Computer Systems↗

PubMed2001

Coupling biology and oceanography in models.

The dynamics of marine ecosystems, i.e. the changes of observable chemical-biological quantities in space and time, are driven by biological and physical processes. Predictions of future developments of marine systems need a theoretical framework, i.e. models, solidly based on research and understanding of the different processes involved. The natural way to describe marine systems theoretically seems to be the embedding of chemical-biological models into circulation models. However, while circulation models are relatively advanced the quantitative theoretical description of chemical-biological processes lags behind. This paper discusses some of the approaches and problems in the development of consistent theories and indicates the beneficial potential of the coupling of marine biology and oceanography in models.

Animals↗

PubMed1989