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When do parasites fail to speciate in response to host speciation?

Cospeciation generally increases the similarity between host and parasite phylogenies. Incongruence between host and parasite phylogenies has previously been explained in terms of host switching, sorting, and duplication events. Here, we describe an additional process, failure of the parasite to speciate in response to host speciation, that may be important in some host-parasite systems. Failure to speciate is likely to occur when gene flow among parasite populations is much higher than that of their hosts. We reconstructed trees from mitochondrial and nuclear DNA sequences for pigeons and doves (Aves: Columbiformes) and their feather lice in the genus Columbicola (Insecta: Phthiraptera). Although comparisons of the trees from each group revealed a significant amount of cospeciation, there was also a significant degree of incongruence. Cophylogenetic analyses generally indicated that host switching may be an important process in the history of this host-parasite association. Using terminal sister taxon comparisons, we also identified three apparent cases where the host has speciated but the associated parasite has not. In two of these cases of failure to speciate, these comparisons involve allopatric sister taxa of hosts whose lice also occur on hosts sympatric with both of the allopatric sisters. These additional hosts for generalist lice may promote gene flow with lice on the allopatric sister species. Relative rate comparisons for the mitochondrial cytochrome oxidase I gene indicate that molecular substitution occurs about 11 times faster in lice than in their avian hosts.

Animals↗

Determination of trace element speciation and the role of speciation in aquatic toxicity.

Knowledge of trace element speciation in waters is essential to an understanding of aquatic toxicity and bioaccumulation, as well as to the partitioning of elements between water and colloidal and particulate phases. In natural waters, only very small percentages of the dissolved heavy metals, such as copper, lead cadmium or zinc, are present as free (aquo) metal ion; most of the metal is adsorbed to colloidal particles or combined in complexes. For aquatic toxicity studies, the aim of the speciation measurement is to determine the fraction of total dissolved metal (the 'toxic fraction') that will react with, and be transported across, a biological membrane such as a fish gill. In this review, a range of trace element speciation techniques is discussed and compared. A simple anodic stripping voltammetric method is recommended for the measurement of the fraction of electroactive metal in a sample, i.e. the fraction of total dissolved metal that can be deposited into a mercury electrode at the natural pH of the sample. The electroactive fraction is believed to approximate the toxic fraction. A rapid ion exchange method, suitable for field use, is proposed for the determination of the toxic fraction of copper in waters.

Adsorption↗

Mercury speciation by X-ray absorption fine structure spectroscopy and sequential chemical extractions: a comparison of speciation methods.

Determining the chemical speciation of mercury in contaminated mining and industrial environments is essential for predicting its solubility, transport behavior, and potential bioavailability as well as for designing effective remediation strategies. In this study, two techniques for determining Hg speciation--X-ray absorption fine structure (XAFS) spectroscopy and sequential chemical extractions (SCE)--are independently applied to a set of samples with Hg concentrations ranging from 132 to 7539 mg/kg to determine if the two techniques provide comparable Hg speciation results. Generally, the proportions of insoluble HgS (cinnabar, metacinnabar) and HgSe identified by XAFS correlate well with the proportion of Hg removed in the aqua regia extraction demonstrated to remove HgS and HgSe. Statistically significant (>10%) differences are observed however in samples containing more soluble Hg-containing phases (HgCl2, HgO, Hg3S2O4). Such differences may be related to matrix, particle size, or crystallinity effects, which could affect the apparent solubility of Hg phases present. In more highly concentrated samples, microscopy techniques can help characterize the Hg-bearing species in complex multiphase natural samples.

Environmental Monitoring↗

In-situ speciation of Ni and Zn in freshwaters: comparison between DGT measurements and speciation models.

The technique of DGT (diffusive gradients in thin films) was used for the first time to measure in situ the distribution of Zn and Ni between inorganic species and complexes with fulvic and humic acids in natural waters. With DGT, metals are bound to a resin embedded in a layer of hydrogel after diffusive transport through an adjacent layer of hydrogel. The metal concentrations in the waters can be quantified using simple diffusion equations. By using devices with hydrogels of different pore size, large and small complex species were discriminated. Inorganic species diffuse freely through all gels, but larger organic complexes with fulvic and humic acids diffuse less freely through more restricted gels (gels with smaller pore size). Systematic differences between DGT devices containing gels of different pore size were obtained. Their calibration for the diffusion of fulvic and humic complexes allowed calculation of the concentrations of labile inorganic (Zn, 34.6 +/- 2.5 nM; Ni, 23.5 +/- 0.9 nM) and labile organic (Zn, 43.1 +/- 2.9 nM; Ni, 11.2 +/- 0.7 nM) complexes. The concentration of Zn measured by anodic stripping voltammetry in samples returned to the laboratory lay between the DGT-measured inorganic concentration and the total dissolved concentration, consistent with partial measurement of organic complexes of Zn. The speciation model WHAM successfully predicted the species distribution of Ni, Zn, and Cu, provided that competitive binding by Fe(III) was considered. Using the speciation models WHAM and ECOSAT, free ion activities of Zn and Ni were calculated from (1) the total inorganic species measured by DGT and (2) the total dissolved species and dissolved organic carbon. The calculations confirmed the good model predictions of metal-humic binding but highlighted problems with default databases used for the speciation of inorganic components.

Benzopyrans↗

A Japanese view on speciation: "Sumiwake" explosive speciation of the cichlids in Lake Victoria.

Imanishi's "mental" (cerebral) view of speciation is presented, in Mizuhata's revision. The key concept here is the "ethological partition" of the species. Members of each species=society (etho-species) share the same mental (brain) software, irrespective of their genetic structure. Cerebral animals perform active programmed selection, not to be confused with passive, non-programmed "natural selection" as in Neo-Darwinism. The program includes mating-choice of peculiar characters, distinct from the Neo-Darwinian sexual selection supposed due to the specific choosy genes. Speciation can occur, as a "partition of species=society", with bifurcation of mate-choosing program in the parent species. A main promoter for this bifurcation is species-specific "passion" for especially significant characters: long necks, ornamental antlers, ocelli feathers, bright nuptial colors etc. The cichlids in Lake Victoria achieved explosive speciation, while retaining their genetic homogeneity completely. Therefore it is illogical to attribute this divergence to extraordinary mutations in "action controlling genes". The origin of species=society (etho-species) can trace along to the Cambrian Period.

Animals↗

[Populational speciation or chromosomal speciation? About the book of Jean de Grouchy "From the birth of species to the aberrations of life" (author's transl)].

According to Jean de Grouchy, the emergence of a new species is dependent on an "acceptable" chromosomic rearrangement, which passing from the heterozygous state (in the original bearer) to the homozygous state (in some of his enbred offspring) becomes definitively established and creates a population sexually isolated from its acestors. He is thus using the idea of karyotype to develop the typological theory put forward at the beginning of the century which postulates that a single mutant is at the origin of a new species. Although he gives an important place to chromosomic rearrangements in the sexual isolation of a new species, J. Ruffié demonstrates by arguments taken from population genetics and from the immunological polymorphism of wild populations that speciation is almost always the result of the evolution of an entire group, which, because of geographic isolation, drift, and differential selection, diverges from the ancestral branch and finally becomes totally incapable of breeding with it. He proposes a model of speciation which includes the two processes population and cytologic. At a first step, the group is isolated geographically and continues its independent evolution; the second step consists of chromosomic recombinations which render the sexual isolation complete. The modifications of the karyotype make the process of speciation irreversible.

Adaptation, Physiological↗

Speciation in vanadium bioinorganic systems. 6. Speciation study of aqueous peroxovanadates, including complexes with imidazole.

Using a combination of potentiometry (glass electrode) and quantitative 51V NMR spectroscopy, the full speciation in the vanadate-peroxide and vanadate-peroxide-imidazole systems was determined in the pH range 1-10 (0.150 M Na(Cl) medium, 25 degrees C). Using the computer program LAKE, the pKa value of imidazole and the formation constants for 10 peroxovanadate species and also for three more species where a single imidazole moiety is also bound, have been calculated. The experimental data show a good fit to the calculated speciation model, even for the less abundant species. The species are either monomeric or dimeric in vanadium, and four resonances of the dimeric species have been unambiguously assigned via 2D 51V NMR. Diperoxovanadates are the favoured species at pH 2-10, when sufficient peroxide is present. Imidazole is found to bind strongly to them at pH 6-9. The equilibrium conditions are illustrated in distribution diagrams.

Hydrogen Peroxide↗

Computer simulation of Zn(II) speciation and effect of Gd(III) on Zn(II) speciation in human blood plasma.

The speciation and distribution of Zn(II) and the effect of Gd(III) on Zn(II) speciation in human blood plasma were studied by computer simulation. The results show that, in normal blood plasma, the most predominant species of Zn(II) are [Zn(HSA)] (58.2%), [Zn(IgG)](20.1%), [Zn(Tf)] (10.4%), ternary complexes of [Zn(Cit)(Cys)] (6.6%) and of [Zn(Cys)(His)H] (1.6%), and the binary complex of [Zn(Cys)2H] (1.2%). When zinc is deficient, the distribution of Zn(II) species is similar to that in normal blood plasma. Then, the distribution changes with increasing zinc(II) total concentration. Overloading Zn(II) is initially mainly bound to human serum albumin (HSA). As the available amount of HSA is exceeded, phosphate metal and carbonate metal species are established. Gd(III) entering human blood plasma predominantly competes for phosphate and carbonate to form precipitate species. However, Zn(II) complexes with phosphate and carbonate are negligible in normal blood plasma, so Gd(III) only have a little effect on zinc(II) species in human blood plasma at a concentration above 1.0 x 10(-4) M.

Computer Simulation↗

Artificial life and speciation, a case study: heterochromatin and speciation in the Microtus savii Group (Rodentia-Arvicolinae).

Artificial life is a tool which is used for simulation of peculiar cases of evolutionary events. The main characteristic of artificial life is that with this technique it is possible to simulate for a high number of generations the evolution of a population of individuals. Each individual is characterised by a small number of parameters, but each individual has its own evolutive story. So far it is possible to simulate the evolution of a population of some thousands specimens, for a high number of generations. The realistic aspect of the simulation is that each specimen is taken individually. In our opinion this instrument is very useful to simulate the evolution of the hybrids barrier during speciation. For this reason it is applied to a peculiar case of speciation, that of the Savi pine vole (Microtus savii) whose experimental data were recently investigated.

Animals↗

Determination of hexavalent chromium by using speciated isotope-dilution mass spectrometry after microwave speciated extraction of environmental and other solid materials.

Precise and accurate determination of hexavalent chromium in different types of solid environmental sample is regarded as a technical challenge with significant potential error if historically accepted methods are used. Microwave-assisted alkaline extraction (0.5 mol L(-1) NaOH + 0.28 mol L(-1) Na2CO3) followed by anion-exchange chromatographic separation and inductively coupled plasma mass spectrophotometric detection has been shown to provide accurate and precise results. To obtain a better understanding of potential species conversion during and/or after extraction steps, speciated isotope-dilution mass spectrometry (SIDMS) (EPA Method 6800) metrology has been successfully applied as a diagnostic tool with the modified accompanying extraction version of EPA Method 3060A. In our study, aggregate materials distributed over a large area of a major western US state were found to contain a high concentration of total chromium (195 +/- 13 to 709 +/- 19 microg g(-1)) and significant amounts of Cr6+ (141 +/- 6 to 341 +/- 29 microg g(-1)) which are at least three orders of magnitude higher than the US EPA threshold limit (0.5 microg g(-1)). Sediment samples from a major western US state, studied independently, were found to contain less (1.77 +/- 0.34 microg g(-1)) or no Cr6+ in the presence of significant total chromium.

Journal Article↗

Simultaneous speciation analysis of Sb(III), Sb(V) and (CH3)3SbCl2 by high performance liquid chromatography-hydride generation-atomic fluorescence spectrometry detection (HPLC-HG-AFS): application to antimony speciation in sea water.

This paper presents an improvement for the simultaneous separation of Sb(V), Sb(III) and (CH3)3SbCl2 species by high performance liquid chromatography (HPLC) and its detection by hydride generation-atomic fluorescence spectrometry (HG-AFS). The separation was performed on an anion exchange column PRP-X100 using a gradient elution program between EDTA/KHP (potasium hydrogen phtalate) as first mobile phase and phosphate solutions solution as the second one. The chromatographic separation and the HG-AFS parameters were optimized by experimental design. The best results were obtained by using an elution program with 20 mmol l(-1) EDTA + 2 mmol(-01) KHP solution at pH 4.5, during 1.15 min, then change to 50 mmol l(-1) (NH4)2HPO4 solution at pH 8.3, switching back after 4.0 min to the first mobile phase, until 5 min, with a constant flow rate of 1.5 ml min(-1). Retention time of Sb(V), Sb(III) and trimethylantimony species were 1.22, 2.31 and 3.45 min and the detection limits were 0.13; 0.07 and 0.13 microg l(-1), respectively. Studies on the stability of this antimony species in sea water samples on the function of the elapsed time of storage in refrigerator at 4 degrees C was performed employing the optimized method. Results revealed that Sb(III) is easily oxidized within some hours to Sb(V) in sea water stored at 4 degrees C. However, when the sea water was immediately mixed with EDTA no oxidation of Sb(III) was observed up to 1 week of storage. The proposed methodology was then applied to the antimony speciation in sea water samples.

Analysis of Variance↗

Application of speciated isotope dilution mass spectrometry to evaluate extraction methods for determining mercury speciation in soils and sediments.

Extraction techniques commonly used to extract methylmercury or mercury species from various matrixes have been evaluated regarding their potential to transform inorganic mercury to methylmercury, or vice versa, during sample preparation steps by applying speciated isotope dilution mass spectrometry. Two of the five tested methods were highly prone to form inorganic mercury from methylmercury. Some published methods converted methylmercury to inorganic mercury approximately 100% (including the spiked CH(3)(201)Hg(+)). In other methods, as much as 45% of methylmercury was converted to inorganic mercury during extraction. The methods evaluated included cold acid extraction and sonication. Other methods, such as the proposed EPA RCRA Draft Method 3200, microwave-assisted extraction, and another sonication-based methods induced very little or no methylmercury transformation to inorganic mercury. Among these three methods, the proposed Draft EPA Method 3200 was found to be the most efficient.

Geologic Sediments↗

Perspective: models of speciation: what have we learned in 40 years?

Theoretical studies of speciation have been dominated by numerical simulations aiming to demonstrate that speciation in a certain scenario may occur. What is needed now is a shift in focus to identifying more general rules and patterns in the dynamics of speciation. The crucial step in achieving this goal is the development of simple and general dynamical models that can be studied not only numerically but analytically as well. I review some of the existing analytical results on speciation. I first show why the classical theories of speciation by peak shifts across adaptive valleys driven by random genetic drift run into trouble (and into what kind of trouble). Then I describe the Bateson-Dobzhansky-Muller (BDM) model of speciation that does not require overcoming selection. I describe exactly how the probability of speciation, the average waiting time to speciation, and the average duration of speciation depend on the mutation and migration rates, population size, and selection for local adaptation. The BDM model postulates a rather specific genetic architecture of reproductive isolation. I then show exactly why the genetic architecture required by the BDM model should be common in general. Next I consider the multilocus generalizations of the BDM model again concentrating on the qualitative characteristics of speciation such as the average waiting time to speciation and the average duration of speciation. Finally, I consider two models of sympatric speciation in which the conditions for sympatric speciation were found analytically. A number of important conclusions have emerged from analytical studies. Unless the population size is small and the adaptive valley is shallow, the waiting time to a stochastic transition between the adaptive peaks is extremely long. However, if transition does happen, it is very quick. Speciation can occur by mutation and random drift alone with no contribution from selection as different populations accumulate incompatible genes. The importance of mutations and drift in speciation is augmented by the general structure of adaptive landscapes. Speciation can be understood as the divergence along nearly neutral networks and holey adaptive landscapes (driven by mutation, drift, and selection for adaptation to a local biotic and/or abiotic environment) accompanied by the accumulation of reproductive isolation as a by-product. The waiting time to speciation driven by mutation and drift is typically very long. Selection for local adaptation (either acting directly on the loci underlying reproductive isolation via their pleiotropic effects or acting indirectly via establishing a genetic barrier to gene flow) can significantly decrease the waiting time to speciation. In the parapatric case the average actual duration of speciation is much shorter than the average waiting time to speciation. Speciation is expected to be triggered by changes in the environment. Once genetic changes underlying speciation start, they go to completion very rapidly. Sympatric speciation is possible if disruptive selection and/or assortativeness in mating are strong enough. Sympatric speciation is promoted if costs of being choosy are small (or absent) and if linkage between the loci experiencing disruptive selection and those controlling assortative mating is strong.

Adaptation, Biological↗

The geography of mammalian speciation: mixed signals from phylogenies and range maps.

The importance of geographic isolation in speciation has been debated since the 19th century. Since the beginning of the 20th century, the consensus has been that most speciation involves divergence in allopatry. This consensus was based largely on decades of observations by naturalists and verbal arguments against speciation without isolation. Recent attempts to quantify the importance of allopatric versus sympatric speciation using comparative methods called "age-range correlation" (ARC) suggest that allopatric speciation is more common than sympatric speciation. However, very few taxa have been studied and there are concerns about the adequacy of the methods. We propose methodological improvements including changes in the way overlap between clades is quantified and Monte Carlo methods to test the null hypothesis of no relationship between phylogenetic relatedness and geographic range overlap. We analyze 14 clades of mammals, chosen because of the availability of data and the consensus among mammalogists that speciation is routinely allopatric. Although data from a few clades clearly indicate allopatric speciation, divergence with gene flow is plausible in others and many results are inconclusive. The relative rarity of significant correlations between phylogenetic distance and range overlap may have three distinct causes: (1) post-speciation range changes, (2) relative rarity of range overlap, and (3) a mixture of geographic modes of speciation. Our results support skepticism about ARC's power for inferring the biogeography of speciation. Yet, even if few clades provide clear signals, meta-analytic approaches such as ARC may set bounds on the prevalence of alternative modes of speciation.

Animals↗

Rapid allopatric speciation in logperch darters (Percidae: Percina).

Theory predicts that clades diversifying via sympatric speciation will exhibit high diversification rates. However, the expected rate of diversification in clades characterized by allopatric speciation is less clear. Previous studies have documented significantly higher speciation rates in freshwater fish clades diversifying via sympatric versus allopatric modes, leading to suggestions that the geographic pattern of speciation can be inferred solely from knowledge of the diversification rate. We tested this prediction using an example from darters, a clade of approximately 200 species of freshwater fishes endemic to eastern North America. A resolved phylogeny was generated using mitochondrial DNA gene sequences for logperches, a monophyletic group of darters composed of 10 recognized species. Divergence times among logperch species were estimated using a fossil calibrated molecular clock in centrarchid fishes, and diversification rates in logperches were estimated using several methods. Speciation events in logperches are recent, extending from 4.20 +/- 1.06 million years ago (mya) to 0.42 +/- 0.22 mya, with most speciation events occurring in the Pleistocene. Diversification rates are high in logperches, at some nodes exceeding rates reported for well-studied adaptive radiations such as Hawaiian silverswords. The geographic pattern of speciation in logperches was investigated by examining the relationship between degree of sympatry and the absolute age of the contrast, with the result that diversification in logperches appears allopatric. The very high diversification rate observed in the logperch phylogeny is more similar to freshwater fish clades thought to represent examples of sympatric speciation than to clades representing allopatric speciation. These results demonstrate that the geographic mode of speciation for a clade cannot be inferred from the diversification rate. The empirical observation of high diversification rates in logperches demonstrates that allopatric speciation can occur rapidly.

Animals↗

Sympatric speciation by sexual selection: a critical reevaluation.

Several empirical studies put forward sexual selection as an important driving force of sympatric speciation. This idea agrees with recent models suggesting that speciation may proceed by means of divergent Fisherian runaway processes within a single population. Notwithstanding this, the models so far have not been able to demonstrate that sympatric speciation can unfold as a fully adaptive process driven by sexual selection alone. Implicitly or explicitly, most models rely on nonselective factors to initiate speciation. In fact, they do not provide a selective explanation for the considerable variation in female preferences required to trigger divergent runaway processes. We argue that such variation can arise by disruptive selection but only when selection on female preferences is frequency dependent. Adaptive speciation is therefore unattainable in traditional female choice models, which assume selection on female preferences to be frequency independent. However, when frequency-dependent sexual selection processes act alongside mate choice, truly adaptive sympatric speciation becomes feasible. Speciation is then initiated independently of nonadaptive processes and does not suffer from the theoretical weaknesses associated with the current Fisherian runaway model of speciation. However, adaptive speciation requires the simultaneous action of multiple mechanisms, and therefore it occurs under conditions far more restrictive than earlier models of sympatric speciation by sexual selection appear to suggest.

Animals↗